Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029377.1

Orthogroup ID

OG0004577

Physical Location & Seq

Genomic Coordinates Forward (+)

1150 .. 2885

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029377.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgcattcggcggctgctccggctctaaaagggcttaagttcataagcaagaatgcggagtggccggcggtggagaaaaacttcgacaagctcaccggctcgaccaacgggatgctgccacgtgagctgttcggagagtgcatcgggatgggcagagaatccaaggagttcgccggactactgttcgatgctttggccaggaagcttggcatcaaaggccacccgatcaacaaggaggagttgagggagatgtgggtgcaagtttctaagcaggacttcgattccagtcttcaaattttctttgacatggttgatcaggatggagatggaagaatcagtgtagaagatgttcaggagatggttagcttcagtgcttctgtcaacaaattatcaaacatcaaggcacaagcagaggaatatgcagcattgatcatggaagagttggatccagacaatcttggatacatcacgacagagagtttggagactctcctactgtatggaccgcaggagacagtggtgcgaggaaaggagagccagaacctgaataaaatgctgagccagaagctgaagccggtaagggaggacaaccctctgaggaggtggtataggagcactaactactttcttgaagacaattggcagagagtttgggtaatggcactgtggattgggatcatggctggtctatttgcctataagtatgtgcagtataaaaacagggctgcatatcaagtaatgggtcattgtgtatccatggccaaaggtgcagctgagacactcaagttcaacatggctcttattctacttccattgtgcagaaacactatcactcttctgaggaacaagaccaaattgggtgttgctattccttttgatgacaacctcaatttccacaaggtgatagctattggaatttcagtaggggttggcatacactcaatttaccatttggcctgtgatttccctcgtctcattaaagcagacagtgacaagtacgccccgatgaagcaattttttggggaacaaccttcaaactattggttttttctaaaatcagtggaaggagtaactggcattataatggtagtgttgatgacaatagccttaacactgtcagcaccatgttttagaagaggtaggttctaccgcctcaggaggctcactggccctagagcctttttctactcccatcaactctttatcattgtctataccttgctcattgtccatggagagtacctgtacctcaccaaggaatggtacaagaaaacggttagaacatccttcatcaccttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

433

Amino Acids

49.56

Weight (kDa)

9.09

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25090 AT4G25090 AT5G07390 AT5G07390 AT5G51060
fragaria_vesca	FvH4_5g10010 FvH4_5g10010 FvH4_5g10010 FvH4_5g10010
malus_domestica	MD06G1128500.v1.1
prunus_persica	Prupe.5G138300_v2.0.a1
pyrus_communis	pycom06g11870
rosa_chinensis	RchiOBHm_Chr7g0188251 RchiOBHm_Chr7g0202531
rosa_laevigata	RLG00000003591 RLG00000004714
rosa_multiflora	Rmu_sc0008750.1_g000012 Rmu_sc0029377.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254540 Rroxscaffold_3G00266570
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093800 Rh7AG198600 Rh7BG095200 Rh7BG199900 Rh7CG095600 Rh7CG210100 Rh7DG095800 Rh7DG205500
rosa_wichuraiana	Rw7G008080 Rw7G017430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1082
AccB7I	CCANNNNNTGG	1 cut(s)	1260
AciI	CCGC	5 cut(s)	11, 56, 68, 506, 1150
AclWI	GGATC	3 cut(s)	440, 453, 683
AcoI	YGGCCR	3 cut(s)	62, 195, 759
AcsI	RAATTY	2 cut(s)	294, 915
AcuI	CTGAAG	2 cut(s)	352, 590
AcvI	CACGTG	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	901
AfaI	GTAC	4 cut(s)	998, 1241, 1247, 1265
AfiI	CCNNNNNNNGG	2 cut(s)	1255, 1260
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	293, 632, 790, 1035
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	7 cut(s)	91, 127, 205, 366, 568, 773, 908
AluI	AGCT	7 cut(s)	91, 127, 205, 366, 568, 773, 908
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	4 cut(s)	479, 506, 770, 977
AlwI	GGATC	3 cut(s)	440, 453, 683
AlwNI	CAGNNNCTG	2 cut(s)	544, 568
AoxI	GGCC	6 cut(s)	62, 195, 217, 759, 954, 1168
ApeKI	GCWGC	5 cut(s)	14, 115, 422, 725, 770
ApoI	RAATTY	2 cut(s)	294, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
Asp700I	GAANNNNTTC	2 cut(s)	80, 348
AspS9I	GGNCC	2 cut(s)	503, 1169
AsuHPI	GGTGA	4 cut(s)	85, 913, 1243, 1285
AvaII	GGWCC	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	1154
BalI	TGGCCA	2 cut(s)	197, 761
BamHI	GGATCC	1 cut(s)	445
BbrPI	CACGTG	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	281, 639
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	4 cut(s)	102, 434, 712, 782
BccI	CCATC	5 cut(s)	142, 314, 320, 352, 1200
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	2 cut(s)	455, 763
BclI	TGATCA	2 cut(s)	313, 429
BcoDI	GTCTC	4 cut(s)	479, 506, 770, 977
BfaI	CTAG	1 cut(s)	1173
BfrI	CTTAAG	1 cut(s)	35
BfuI	GTATCC	2 cut(s)	455, 763
BisI	GCNGC	6 cut(s)	12, 15, 116, 423, 726, 771
BlpI	GCTNAGC	1 cut(s)	557
BlsI	GCNGC	6 cut(s)	13, 16, 117, 424, 727, 772
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	503, 1169
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	4 cut(s)	102, 150, 178, 219
BpiI	GAAGAC	2 cut(s)	281, 639
Bpu1102I	GCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	767
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	674
BsaJI	CCNNGG	4 cut(s)	162, 756, 1231, 1254
Bsc4I	CCNNNNNNNGG	2 cut(s)	1255, 1260
Bse118I	RCCGGY	3 cut(s)	64, 95, 574
Bse1I	ACTGG	3 cut(s)	285, 1078, 1171
Bse21I	CCTNAGG	1 cut(s)	1154
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	4 cut(s)	162, 756, 1231, 1254
BseGI	GGATG	4 cut(s)	117, 153, 325, 1283
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	2 cut(s)	1255, 1260
BseMII	CTCAG	5 cut(s)	548, 587, 765, 830, 1168
BseNI	ACTGG	3 cut(s)	285, 1078, 1171
BseRI	GAGGAG	2 cut(s)	251, 613
BseXI	GCAGC	4 cut(s)	102, 434, 712, 782
BsgI	GTGCAG	3 cut(s)	728, 789, 838
BshFI	GGCC	6 cut(s)	64, 197, 219, 761, 956, 1170
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	5 cut(s)	20, 65, 96, 174, 575
BslI	CCNNNNNNNGG	2 cut(s)	1255, 1260
BsmAI	GTCTC	4 cut(s)	479, 506, 770, 977
BsmBI	CGTCTC	1 cut(s)	977
BsmI	GAATGC	2 cut(s)	4, 58
BsnI	GGCC	6 cut(s)	64, 197, 219, 761, 956, 1170
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	5 cut(s)	225, 313, 429, 445, 675
Bsp1720I	GCTNAGC	1 cut(s)	557
Bsp19I	CCATGG	2 cut(s)	756, 1231
BspACI	CCGC	5 cut(s)	11, 56, 68, 506, 1150
BspANI	GGCC	6 cut(s)	64, 197, 219, 761, 956, 1170
BspCNI	CTCAG	5 cut(s)	549, 588, 766, 831, 1167
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	440, 453, 683
BspTI	CTTAAG	1 cut(s)	35
BsrFI	RCCGGY	3 cut(s)	64, 95, 574
BsrI	ACTGG	3 cut(s)	285, 1078, 1171
BssAI	RCCGGY	3 cut(s)	64, 95, 574
BssECI	CCNNGG	4 cut(s)	162, 756, 1231, 1254
BssMI	GATC	5 cut(s)	225, 313, 429, 445, 675
BssT1I	CCWWGG	4 cut(s)	162, 756, 1231, 1254
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	7 cut(s)	183, 498, 517, 666, 989, 1116, 1276
Bst6I	CTCTTC	3 cut(s)	432, 840, 1129
BstAFI	CTTAAG	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	6 cut(s)	267, 557, 596, 774, 839, 1154
BstDSI	CCRYGG	2 cut(s)	756, 1231
BstENI	CCTNNNNNAGG	1 cut(s)	1253
BstF5I	GGATG	4 cut(s)	117, 153, 325, 1283
BstKTI	GATC	5 cut(s)	228, 316, 432, 448, 678
BstMAI	GTCTC	4 cut(s)	479, 506, 770, 977
BstMBI	GATC	5 cut(s)	225, 313, 429, 445, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 124, 216, 767
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	102, 434, 712, 782
BstV2I	GAAGAC	2 cut(s)	281, 639
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu36I	CCTNAGG	1 cut(s)	1154
BsuI	GTATCC	2 cut(s)	455, 763
BsuRI	GGCC	6 cut(s)	64, 197, 219, 761, 956, 1170
BtgI	CCRYGG	2 cut(s)	756, 1231
BtsCI	GGATG	4 cut(s)	117, 153, 325, 1283
BtsIMutI	CAGTG	8 cut(s)	343, 376, 522, 662, 994, 1065, 1112, 1164
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	544, 568
Cfr10I	RCCGGY	3 cut(s)	64, 95, 574
Cfr13I	GGNCC	2 cut(s)	503, 1169
Csp6I	GTAC	4 cut(s)	997, 1240, 1246, 1264
CviAII	CATG	7 cut(s)	307, 433, 679, 757, 793, 1125, 1232
CviQI	GTAC	4 cut(s)	997, 1240, 1246, 1264
DdeI	CTNAG	6 cut(s)	267, 557, 596, 774, 839, 1154
DpnI	GATC	5 cut(s)	227, 315, 431, 447, 677
DpnII	GATC	5 cut(s)	225, 313, 429, 445, 675
DraIII	CACNNNGTG	1 cut(s)	901
EaeI	YGGCCR	3 cut(s)	62, 195, 759
Eam1104I	CTCTTC	3 cut(s)	432, 840, 1129
EarI	CTCTTC	3 cut(s)	432, 840, 1129
Eco130I	CCWWGG	4 cut(s)	162, 756, 1231, 1254
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	352, 590
Eco72I	CACGTG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	1154
EcoNI	CCTNNNNNAGG	1 cut(s)	1253
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	4 cut(s)	162, 756, 1231, 1254
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	162, 756, 1231, 1254
Esp3I	CGTCTC	1 cut(s)	977
FaeI	CATG	7 cut(s)	310, 436, 682, 760, 796, 1128, 1235
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	7 cut(s)	306, 432, 678, 756, 792, 1124, 1231
FbaI	TGATCA	2 cut(s)	313, 429
Fnu4HI	GCNGC	6 cut(s)	12, 15, 116, 423, 726, 771
FokI	GGATG	4 cut(s)	124, 160, 332, 1270
Fsp4HI	GCNGC	6 cut(s)	12, 15, 116, 423, 726, 771
FspBI	CTAG	1 cut(s)	1173
GluI	GCNGC	6 cut(s)	12, 15, 116, 423, 726, 771
HaeIII	GGCC	6 cut(s)	64, 197, 219, 761, 956, 1170
HapII	CCGG	5 cut(s)	20, 65, 96, 174, 575
Hin1II	CATG	7 cut(s)	310, 436, 682, 760, 796, 1128, 1235
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	158, 281, 333, 487
HpaII	CCGG	5 cut(s)	20, 65, 96, 174, 575
HphI	GGTGA	4 cut(s)	85, 913, 1243, 1285
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	134, 597, 840
Hpy188III	TCNNGA	7 cut(s)	145, 317, 353, 449, 469, 629, 1156
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	1041, 1058, 1297
HpyCH4III	ACNGT	7 cut(s)	183, 498, 517, 666, 989, 1116, 1276
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	8 cut(s)	4, 141, 259, 422, 709, 728, 770, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 124, 216, 767
HpyF3I	CTNAG	6 cut(s)	267, 557, 596, 774, 839, 1154
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	7 cut(s)	310, 436, 682, 760, 796, 1128, 1235
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	313, 429
Kzo9I	GATC	5 cut(s)	225, 313, 429, 445, 675
LmnI	GCTCC	2 cut(s)	22, 612
Lsp1109I	GCAGC	4 cut(s)	102, 434, 712, 782
LweI	GCATC	4 cut(s)	102, 150, 178, 219
MaeI	CTAG	1 cut(s)	1173
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	989, 1069
MalI	GATC	5 cut(s)	227, 315, 431, 447, 677
MboI	GATC	5 cut(s)	225, 313, 429, 445, 675
MboII	GAAGA	7 cut(s)	281, 342, 356, 449, 644, 827, 1146
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	617
MlsI	TGGCCA	2 cut(s)	197, 761
MluCI	AATT	8 cut(s)	294, 386, 637, 854, 889, 915, 942, 1013
MluNI	TGGCCA	2 cut(s)	197, 761
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	423
Mox20I	TGGCCA	2 cut(s)	197, 761
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	80, 348
MscI	TGGCCA	2 cut(s)	197, 761
MseI	TTAA	3 cut(s)	36, 978, 1109
MslI	CAYNNNNRTG	2 cut(s)	146, 1082
Msp20I	TGGCCA	2 cut(s)	197, 761
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	5 cut(s)	20, 65, 96, 174, 575
MspR9I	CCNGG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	637
Mva1269I	GAATGC	2 cut(s)	4, 58
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	20, 124, 216, 767
NaeI	GCCGGC	1 cut(s)	66
NcoI	CCATGG	2 cut(s)	756, 1231
NdeII	GATC	5 cut(s)	225, 313, 429, 445, 675
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	7 cut(s)	310, 436, 682, 760, 796, 1128, 1235
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	989
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	2 cut(s)	4, 58
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	80, 348
PfeI	GAWTC	3 cut(s)	158, 281, 333
PflMI	CCANNNNNTGG	1 cut(s)	1260
PkrI	GCNGC	6 cut(s)	13, 16, 117, 424, 727, 772
PleI	GAGTC	1 cut(s)	481
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	1082
Psp6I	CCWGG	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	2 cut(s)	503, 1169
PsrI	GAACNNNNNNTAC	2 cut(s)	333, 365
PstNI	CAGNNNCTG	2 cut(s)	544, 568
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	998, 1241, 1247, 1265
RsaNI	GTAC	4 cut(s)	997, 1240, 1246, 1264
RseI	CAYNNNNRTG	2 cut(s)	146, 1082
SaqAI	TTAA	3 cut(s)	36, 978, 1109
SatI	GCNGC	6 cut(s)	12, 15, 116, 423, 726, 771
Sau3AI	GATC	5 cut(s)	225, 313, 429, 445, 675
Sau96I	GGNCC	2 cut(s)	503, 1169
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	4 cut(s)	102, 150, 178, 219
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	146, 1082
SmlI	CTYRAG	2 cut(s)	35, 782
SmoI	CTYRAG	2 cut(s)	35, 782
Sse9I	AATT	8 cut(s)	294, 386, 637, 854, 889, 915, 942, 1013
SsiI	CCGC	5 cut(s)	11, 56, 68, 506, 1150
SspMI	CTAG	1 cut(s)	1173
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	4 cut(s)	162, 756, 1231, 1254
TaaI	ACNGT	7 cut(s)	183, 498, 517, 666, 989, 1116, 1276
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	4 cut(s)	84, 101, 186, 279
TasI	AATT	8 cut(s)	294, 386, 637, 854, 889, 915, 942, 1013
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	158, 281, 333
Tru1I	TTAA	3 cut(s)	36, 978, 1109
Tru9I	TTAA	3 cut(s)	36, 978, 1109
TscAI	CASTG	8 cut(s)	343, 376, 522, 669, 994, 1065, 1119, 1171
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	5 cut(s)	14, 115, 422, 725, 770
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	3 cut(s)	31, 1022, 1279
TspRI	CASTG	8 cut(s)	343, 376, 522, 669, 994, 1065, 1119, 1171
Van91I	CCANNNNNTGG	1 cut(s)	1260
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	1253
XapI	RAATTY	2 cut(s)	294, 915
XmnI	GAANNNNTTC	2 cut(s)	80, 348
XspI	CTAG	1 cut(s)	1173
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.