Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015136

Physical Location & Seq

Genomic Coordinates Reverse (-)

20777501 .. 20779488

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCGCCACGTCATCATCACCGCCGTGTAACATCTCCGCGTCCTCCCTCCTCCTCCGTCAACCTTCTCGCTCAATCCTTAAAGTGTTCGGTTTATTACCACCTGTAAGTAGGAATAACCGTAAACTCGGCCGGTTAACGGTGACCCGGTCTAATCTGGCGCAGGATTTTCTTGGTGACTTCGGAGCTCGTGACCCTTACCCGGAGGAGATAGCGAGTCAATTCGGAGATAAAGTGTTGGGATGCCAAAGCACTGAGCACAAGATTTTGATACCAAACGCATCTGTTTTGTCTCTCTCCCAGCTTCAGTGTTCCCCTGTTTCGTCTTCACAGCCTCCTTTGTCCGGCGATGATGCCAGAACTCTCCTCCACAAGGTTTTGGGATGGAGTATAGTGGATAATGAAGCGGGTGGTCTGAAAATAAGGTGTATGTGGAAAGTGAGGGATTTTGGGTGCGGTGTTGAACTCATAAACAGGATCCATAAGGTTGCTGAAGCTTCTGGTCATTACCCTTCTCTTCACTTGGAAAGTCCTACCCAAGTTCGAGCTGAACTATTTACCTCTTCTATCGGAGGGTTGAGCATGAATGATTTCATAATGGCGGCTAAAATAGATGATATCAAGACTTCTGATCTTTCCCCTAGGAAAAGAGCTTGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0022607 GO:0033993 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0071840 GO:0071944 GO:0097305 GO:0110102 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pterin_4a

Protein Analysis

220

Amino Acids

23.9

Weight (kDa)

9.06

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pterin_4a	PF01329	86 - 180	1.9e-20	Pterin 4 alpha carbinolamine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51110 AT5G51110
fragaria_vesca	FvH4_7g26390
malus_domestica	MD07G1239200.v1.1
prunus_persica	Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis	pycom07g21520
rosa_chinensis	RchiOBHm_Chr1g0372941
rosa_laevigata	RLG00000026864
rosa_multiflora	Rmu_ssc0000425.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284590
rosa_rugosa	Rorug01G0375100
rosa_samantha	Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana	Rw1G033800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	6, 23, 39, 407, 456, 602
AclWI	GGATC	2 cut(s)	472, 485
AcoI	YGGCCR	2 cut(s)	3, 130
AcuI	CTGAAG	2 cut(s)	290, 513
AfiI	CCNNNNNNNGG	4 cut(s)	139, 202, 344, 373
AgsI	TTSAA	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	188, 304, 497, 548, 653
AluI	AGCT	5 cut(s)	188, 304, 497, 548, 653
Alw21I	GWGCWC	2 cut(s)	190, 261
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	472, 485
AoxI	GGCC	2 cut(s)	3, 130
Asp700I	GAANNNNTTC	1 cut(s)	590
AspA2I	CCTAGG	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	148, 203
AsuHPI	GGTGA	3 cut(s)	12, 154, 188
AvrII	CCTAGG	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	190, 261
BccI	CCATC	1 cut(s)	378
BceAI	ACGGC	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	148, 203
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	642
BisI	GCNGC	2 cut(s)	6, 603
BlnI	CCTAGG	1 cut(s)	641
BlsI	GCNGC	2 cut(s)	7, 604
Bme1390I	CCNGG	2 cut(s)	148, 203
BmgBI	CACGTC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	148, 203
BmsI	GCATC	3 cut(s)	233, 290, 343
BpiI	GAAGAC	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	148, 203
BsaJI	CCNNGG	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 202, 344, 373
Bse118I	RCCGGY	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	2 cut(s)	248, 389
BseLI	CCNNNNNNNGG	4 cut(s)	139, 202, 344, 373
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	4 cut(s)	41, 44, 221, 356
BseX3I	CGGCCG	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	5, 132
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	190, 261
BsiSI	CCGG	4 cut(s)	133, 148, 203, 345
BslI	CCNNNNNNNGG	4 cut(s)	139, 202, 344, 373
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	5, 132
Bsp1286I	GDGCHC	2 cut(s)	190, 261
Bsp143I	GATC	2 cut(s)	477, 631
BspACI	CCGC	6 cut(s)	6, 23, 39, 407, 456, 602
BspANI	GGCC	2 cut(s)	5, 132
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	472, 485
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	2 cut(s)	477, 631
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	641
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	122, 142
Bst6I	CTCTTC	2 cut(s)	522, 568
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	248, 389
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	480, 634
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	477, 631
BstMCI	CGRYCG	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	146, 201
BstUI	CGCG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	5, 132
BtgZI	GCGATG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	248, 389
BtsIMutI	CAGTG	2 cut(s)	252, 314
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	132
CseI	GACGC	1 cut(s)	30
CviAII	CATG	1 cut(s)	583
CviJI	RGCY	9 cut(s)	5, 132, 188, 304, 334, 497, 548, 605, 653
CviKI_1	RGCY	9 cut(s)	5, 132, 188, 304, 334, 497, 548, 605, 653
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	479, 633
DpnII	GATC	2 cut(s)	477, 631
EaeI	YGGCCR	2 cut(s)	3, 130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	522, 568
EarI	CTCTTC	2 cut(s)	522, 568
Ecl136II	GAGCTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	619
Eco52I	CGGCCG	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	290, 513
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	1 cut(s)	586
FaiI	YATR	6 cut(s)	392, 431, 470, 483, 584, 596
FatI	CATG	1 cut(s)	582
FauI	CCCGC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	6, 603
FokI	GGATG	2 cut(s)	255, 396
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	6, 603
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	6, 603
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	5, 132
HapII	CCGG	4 cut(s)	133, 148, 203, 345
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	586
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	62, 138
HindII	GTYRAC	2 cut(s)	62, 138
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	1 cut(s)	217
HpaI	GTTAAC	1 cut(s)	138
HpaII	CCGG	4 cut(s)	133, 148, 203, 345
HphI	GGTGA	3 cut(s)	12, 154, 188
Hpy166II	GTNNAC	3 cut(s)	62, 125, 138
Hpy188I	TCNGA	5 cut(s)	185, 227, 417, 572, 631
Hpy188III	TCNNGA	2 cut(s)	191, 622
Hpy8I	GTNNAC	3 cut(s)	62, 125, 138
HpyAV	CCTTC	2 cut(s)	75, 522
HpyCH4III	ACNGT	2 cut(s)	122, 142
HpyCH4IV	ACGT	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	586
HspAI	GCGC	1 cut(s)	161
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	477, 631
LmnI	GCTCC	1 cut(s)	185
LweI	GCATC	3 cut(s)	233, 290, 343
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	4 cut(s)	29, 142, 176, 191
MalI	GATC	2 cut(s)	479, 633
MboI	GATC	2 cut(s)	477, 631
MboII	GAAGA	3 cut(s)	318, 509, 555
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	190, 261
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	81, 137
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	4 cut(s)	133, 148, 203, 345
MspR9I	CCNGG	2 cut(s)	148, 203
MvnI	CGCG	1 cut(s)	41
NciI	CCSGG	2 cut(s)	148, 203
NdeII	GATC	2 cut(s)	477, 631
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	479
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	142, 176, 191
OliI	CACNNNNGTG	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	590
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	7, 604
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	190
PspEI	GGTNACC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	81, 137
SatI	GCNGC	2 cut(s)	6, 603
Sau3AI	GATC	2 cut(s)	477, 631
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	148, 203
SduI	GDGCHC	2 cut(s)	190, 261
SfaNI	GCATC	3 cut(s)	233, 290, 343
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	6 cut(s)	6, 23, 39, 407, 456, 602
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	146, 201
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	122, 142
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	544
TasI	AATT	1 cut(s)	221
TauI	GCSGC	2 cut(s)	8, 605
Tru1I	TTAA	2 cut(s)	81, 137
Tru9I	TTAA	2 cut(s)	81, 137
TscAI	CASTG	2 cut(s)	259, 314
TseFI	GTSAC	3 cut(s)	142, 176, 191
Tsp45I	GTSAC	3 cut(s)	142, 176, 191
TspDTI	ATGAA	3 cut(s)	417, 583, 599
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	259, 314
Tth111I	GACNNNGTC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.