pycom07g21520

Pterin 4 alpha carbinolamine dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015136
Physical Location & Seq
Reverse (-)
23201193 .. 23202290
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21520.3

Sequence Viewer

Length: 630 bp
ATGGCCATGGCCACCACCATCCTTTCCTTACCCCATCTCTCCCTTCCACCTCACCGCCGCCACCACTACCTACCCAACGTAACCACCGTTCCAACTCGGGTTCGACTCGGCCTGCGAACTCAGTCTCTGGGCAATGACATGCTGGGGGATTTCGGTGCCAGAGACCCCTTTCCGGCTGAGATAGCGAGTGGGTTTGGTGAGAAGGTGCTGGGCAACGGCAACACCGACCACAAAATCCTCATCCCCAATTTGTCTGCTCTCTCTCTGTCCCAGTTAGACTGCAGCCCCGTCTCTCCCCTCCAGCCTCCTATGGCGGAGGACGATGCCAAGGAGCTCCTCAGAAAGGTTGTTGGGTGGAGATTGATAGTTGGAGAAGGTGGGCTGAAATTGCAGTGCCTGTGGAAGTTGAGAGATTATCAATGTGGGGTTGAACTCATCAACAGGATTTATAAGGTTGTAGATTCTGCAGGGCATTTCCCAAACCTTCACTTGGAGCAACCAAACCAAGTTAGAGCAGAGCTATGGACATCTTCCATTGGAGGATTGAGCATGAATGATTTCATCGTGGCTGCCAGAATAGATGACATAAAAACATCAGATCTTGTGCCCAGAAAGAGAGTTTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Pterin_4a

Protein Analysis

210

Amino Acids

23.14

Weight (kDa)

8.48

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51110 AT5G51110
fragaria_vesca FvH4_7g26390
malus_domestica MD07G1239200.v1.1
prunus_persica Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis pycom07g21520
rosa_chinensis RchiOBHm_Chr1g0372941
rosa_laevigata RLG00000026864
rosa_multiflora Rmu_ssc0000425.1_g000015
rosa_roxburghii Rroxscaffold_4G00284590
rosa_rugosa Rorug01G0375100
rosa_samantha Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana Rw1G033800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 3 cut(s) 55, 58, 314
AcoI YGGCCR 2 cut(s) 3, 9
AfiI CCNNNNNNNGG 3 cut(s) 172, 343, 490
AgsI TTSAA 1 cut(s) 431
AjuI GAANNNNNNNTTGG 1 cut(s) 604
AluBI AGCT 2 cut(s) 334, 520
AluI AGCT 2 cut(s) 334, 520
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 3 cut(s) 129, 156, 295
AlwNI CAGNNNCTG 2 cut(s) 127, 397
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 3 cut(s) 3, 9, 109
ApeKI GCWGC 2 cut(s) 282, 569
Asp700I GAANNNNTTC 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 44, 209
AvaI CYCGRG 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 2 cut(s) 5, 11
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 294, 556
BccI CCATC 2 cut(s) 26, 42
BceAI ACGGC 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 129, 156, 295
BfmI CTRYAG 2 cut(s) 280, 465
BglII AGATCT 1 cut(s) 598
BisI GCNGC 3 cut(s) 58, 283, 570
BlsI GCNGC 3 cut(s) 59, 284, 571
BmeT110I CYCGRG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 6, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 343, 490
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 6, 327
BseGI GGATG 2 cut(s) 18, 240
BseLI CCNNNNNNNGG 3 cut(s) 172, 343, 490
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 134, 168, 352
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 2 cut(s) 294, 556
BseYI CCCAGC 2 cut(s) 142, 208
BshFI GGCC 3 cut(s) 5, 11, 111
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 172, 343, 490
BsmAI GTCTC 3 cut(s) 129, 156, 295
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 3 cut(s) 5, 11, 111
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 336, 609
Bsp143I GATC 1 cut(s) 598
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 55, 58, 314
BspANI GGCC 3 cut(s) 5, 11, 111
BspCNI CTCAG 3 cut(s) 133, 169, 351
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 2 cut(s) 284, 469
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 6, 327
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 6, 327
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 120, 177, 338, 627
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 18, 240
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 3 cut(s) 129, 156, 295
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 2 cut(s) 182, 388
BstNSI RCATGY 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 280, 465
BstSLI GKGCMC 1 cut(s) 609
BstV1I GCAGC 2 cut(s) 294, 556
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 3 cut(s) 5, 11, 111
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 18, 240
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 2 cut(s) 127, 397
CviAII CATG 3 cut(s) 7, 139, 550
DdeI CTNAG 4 cut(s) 120, 177, 338, 627
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 2 cut(s) 3, 9
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 6, 327
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 6, 327
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 6, 327
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 3 cut(s) 10, 142, 553
FaiI YATR 7 cut(s) 8, 140, 311, 450, 523, 551, 587
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 6, 138, 549
Fnu4HI GCNGC 3 cut(s) 58, 283, 570
FokI GGATG 2 cut(s) 5, 227
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 58, 283, 570
GluI GCNGC 3 cut(s) 58, 283, 570
GsaI CCCAGC 2 cut(s) 146, 212
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 3 cut(s) 5, 11, 111
HapII CCGG 1 cut(s) 173
Hin1II CATG 3 cut(s) 10, 142, 553
HinfI GANTC 2 cut(s) 105, 461
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 44, 209
Hpy188I TCNGA 2 cut(s) 341, 598
HpyAV CCTTC 4 cut(s) 53, 196, 368, 494
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 282, 391, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 388
HpyF3I CTNAG 4 cut(s) 120, 177, 338, 627
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 3 cut(s) 10, 142, 553
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 3 cut(s) 331, 339, 493
Lsp1109I GCAGC 2 cut(s) 294, 556
LweI GCATC 1 cut(s) 313
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 1 cut(s) 522
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 336, 609
MlsI TGGCCA 2 cut(s) 5, 11
MluCI AATT 2 cut(s) 247, 386
MluNI TGGCCA 2 cut(s) 5, 11
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 116, 349
MnlI CCTC 7 cut(s) 60, 248, 308, 310, 315, 347, 533
Mox20I TGGCCA 2 cut(s) 5, 11
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 182, 388
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 598
NlaIII CATG 3 cut(s) 10, 142, 553
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 87
NspI RCATGY 1 cut(s) 142
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 222
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 3 cut(s) 59, 284, 571
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 336
PspFI CCCAGC 2 cut(s) 142, 208
PspN4I GGNNCC 1 cut(s) 157
PsrI GAACNNNNNNTAC 2 cut(s) 72, 104
PstI CTGCAG 2 cut(s) 284, 469
PstNI CAGNNNCTG 2 cut(s) 127, 397
PsuI RGATCY 1 cut(s) 598
SacI GAGCTC 1 cut(s) 336
SatI GCNGC 3 cut(s) 58, 283, 570
Sau3AI GATC 1 cut(s) 598
SchI GAGTC 1 cut(s) 99
SduI GDGCHC 2 cut(s) 336, 609
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 2 cut(s) 280, 465
Sse9I AATT 2 cut(s) 247, 386
SsiI CCGC 3 cut(s) 55, 58, 314
SstI GAGCTC 1 cut(s) 336
StyI CCWWGG 2 cut(s) 6, 327
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 247, 386
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 461
TscAI CASTG 1 cut(s) 398
TseI GCWGC 2 cut(s) 282, 569
TspDTI ATGAA 2 cut(s) 550, 566
TspRI CASTG 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 341
XceI RCATGY 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.