FvH4_7g26390

Pterin 4 alpha carbinolamine dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015136
Physical Location & Seq
Reverse (-)
19959825 .. 19961314
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26390.t1

Sequence Viewer

Length: 633 bp
ATGGCCACCACCAACCTCTCATTCCCCCACTTCTCCCTTCCGTCTCACCACCGCCACCACCACCGCCACAACCACCCCAACTTCTTCACTCTTCCGACCGGGGCCCGACCAGGCCGGAGAACCCAGGCTTTGGGCAGTGACAAGATTGGAGATTTTGGGGCCAGAGACCCATTCCCGGCTGAGATAGCCAGTAATTTTGGAGATAAAGTACTCGGCTTCGAAAACACAGAGCACAAGATCCTCATCCCAACTGTGTCTGCTTCCTCTCTTGCCCAGCAAGACTGCACCCCTGTCTCGCCTCTCCAGAGTCCTATGCTCCAAGACGACGCTCAACAGCTCCTCAGGAAGGTTGTGGGGTGGAGATTGATAGATGGAGAGGATGGGCTGAAACTACAGTGCTTGTGGAAATTGAGAGATTACCAATGTGGGGTGGAACTCATCAATAGGATTTATAAGGTTGTAGAAGCTGCAGGGCATTTCCCAAATCTTCACTTGGAGCAACCCAATCAAGTTAGAGCTGAGCTTTGGACATCTTCCATCGGTGGATTGACTATGAATGATTTCATTGTTGCTGCTAAGATAGATGCGATCGTAACATCGGATCTCGTGCCGAGAAGAAGAGCTTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Pterin_4a

Protein Analysis

211

Amino Acids

23.48

Weight (kDa)

7.85

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pterin_4a PF01329 105 - 197 5.1e-21 Pterin 4 alpha carbinolamine dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51110 AT5G51110
fragaria_vesca FvH4_7g26390
malus_domestica MD07G1239200.v1.1
prunus_persica Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis pycom07g21520
rosa_chinensis RchiOBHm_Chr1g0372941
rosa_laevigata RLG00000026864
rosa_multiflora Rmu_ssc0000425.1_g000015
rosa_roxburghii Rroxscaffold_4G00284590
rosa_rugosa Rorug01G0375100
rosa_samantha Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana Rw1G033800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 130
AciI CCGC 2 cut(s) 52, 64
AclWI GGATC 2 cut(s) 232, 609
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
AjnI CCWGG 2 cut(s) 109, 123
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 607
AluBI AGCT 5 cut(s) 337, 467, 518, 523, 623
AluI AGCT 5 cut(s) 337, 467, 518, 523, 623
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 3 cut(s) 48, 159, 298
AlwI GGATC 2 cut(s) 232, 609
AoxI GGCC 4 cut(s) 3, 102, 112, 159
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 467, 572
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 3 cut(s) 102, 103, 159
AsuC2I CCSGG 2 cut(s) 100, 176
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 219
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 454, 559
BccI CCATC 3 cut(s) 365, 374, 545
BciT130I CCWGG 2 cut(s) 111, 125
BcnI CCSGG 2 cut(s) 100, 176
BcoDI GTCTC 3 cut(s) 48, 159, 298
BfmI CTRYAG 2 cut(s) 392, 468
BisI GCNGC 2 cut(s) 468, 573
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 2 cut(s) 469, 574
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 4 cut(s) 100, 111, 125, 176
BmgT120I GGNCC 3 cut(s) 102, 103, 159
BmiI GGNNCC 3 cut(s) 103, 104, 160
BmrFI CCNGG 4 cut(s) 100, 111, 125, 176
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 100, 176
BsaBI GATNNNNATC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 99, 123
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
Bse1I ACTGG 1 cut(s) 189
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 111, 125
BseDI CCNNGG 2 cut(s) 99, 123
BseGI GGATG 2 cut(s) 243, 385
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
BseMII CTCAG 3 cut(s) 171, 355, 510
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 454, 559
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 268
Bsh1285I CGRYCG 2 cut(s) 99, 591
BshFI GGCC 4 cut(s) 5, 104, 114, 161
BsiEI CGRYCG 2 cut(s) 99, 591
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 99, 115, 176
BslI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
BsmAI GTCTC 3 cut(s) 48, 159, 298
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 4 cut(s) 5, 104, 114, 161
Bso31I GGTCTC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 106, 234
Bsp143I GATC 3 cut(s) 237, 588, 601
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 2 cut(s) 52, 64
BspANI GGCC 4 cut(s) 5, 104, 114, 161
BspCNI CTCAG 3 cut(s) 172, 354, 511
BspLI GGNNCC 3 cut(s) 103, 104, 160
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 232, 609
BspQI GCTCTTC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 99, 123
BssMI GATC 3 cut(s) 237, 588, 601
BssSI CACGAG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 2 cut(s) 111, 125
Bst4CI ACNGT 2 cut(s) 253, 396
Bst6I CTCTTC 2 cut(s) 96, 613
BstBI TTCGAA 1 cut(s) 219
BstDEI CTNAG 5 cut(s) 180, 341, 519, 576, 630
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 243, 385
BstKTI GATC 3 cut(s) 240, 591, 604
BstMAI GTCTC 3 cut(s) 48, 159, 298
BstMBI GATC 3 cut(s) 237, 588, 601
BstMCI CGRYCG 2 cut(s) 99, 591
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 111, 125
BstSCI CCNGG 4 cut(s) 98, 109, 123, 174
BstSFI CTRYAG 2 cut(s) 392, 468
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 454, 559
BstX2I RGATCY 2 cut(s) 237, 601
BstYI RGATCY 2 cut(s) 237, 601
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 4 cut(s) 5, 104, 114, 161
BtsCI GGATG 2 cut(s) 243, 385
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 142, 401
Cfr13I GGNCC 3 cut(s) 102, 103, 159
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 209
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 5 cut(s) 180, 341, 519, 576, 630
DpnI GATC 3 cut(s) 239, 590, 603
DpnII GATC 3 cut(s) 237, 588, 601
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 96, 613
EarI CTCTTC 2 cut(s) 96, 613
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 109, 123
EcoT38I GRGCYC 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 48
FaiI YATR 3 cut(s) 314, 453, 554
FalI AAGNNNNNCTT 1 cut(s) 607
Fnu4HI GCNGC 2 cut(s) 468, 573
FokI GGATG 2 cut(s) 230, 392
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 468, 573
GluI GCNGC 2 cut(s) 468, 573
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 4 cut(s) 5, 104, 114, 161
HapII CCGG 3 cut(s) 99, 115, 176
HgaI GACGC 1 cut(s) 335
HinfI GANTC 1 cut(s) 307
HpaII CCGG 3 cut(s) 99, 115, 176
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 96, 601
Hpy188III TCNNGA 2 cut(s) 304, 343
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 47, 340
HpyCH4III ACNGT 2 cut(s) 253, 396
HpyCH4V TGCA 2 cut(s) 285, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 5 cut(s) 180, 341, 519, 576, 630
Kzo9I GATC 3 cut(s) 237, 588, 601
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 3 cut(s) 321, 342, 496
Lsp1109I GCAGC 2 cut(s) 454, 559
LweI GCATC 1 cut(s) 574
MaeIII GTNAC 2 cut(s) 137, 592
MalI GATC 3 cut(s) 239, 590, 603
MboI GATC 3 cut(s) 237, 588, 601
MboII GAAGA 6 cut(s) 76, 83, 479, 525, 627, 630
MflI RGATCY 2 cut(s) 237, 601
MhlI GDGCHC 2 cut(s) 106, 234
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 193, 407
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 6 cut(s) 26, 251, 274, 309, 350, 370
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 99, 115, 176
MspR9I CCNGG 4 cut(s) 100, 111, 125, 176
MvaI CCWGG 2 cut(s) 111, 125
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 2 cut(s) 100, 176
NdeII GATC 3 cut(s) 237, 588, 601
NlaIV GGNNCC 3 cut(s) 103, 104, 160
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 137
NspV TTCGAA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 560
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 469, 574
Ple19I CGATCG 1 cut(s) 591
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 109, 123
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 109, 123
PspN4I GGNNCC 3 cut(s) 103, 104, 160
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 102, 103, 159
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 2 cut(s) 237, 601
PvuI CGATCG 1 cut(s) 591
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 613
SatI GCNGC 2 cut(s) 468, 573
Sau3AI GATC 3 cut(s) 237, 588, 601
Sau96I GGNCC 3 cut(s) 102, 103, 159
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 4 cut(s) 100, 111, 125, 176
SduI GDGCHC 2 cut(s) 106, 234
SetI ASST 8 cut(s) 18, 339, 351, 459, 469, 520, 525, 625
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 392, 468
SfuI TTCGAA 1 cut(s) 219
Sse9I AATT 2 cut(s) 193, 407
SsiI CCGC 2 cut(s) 52, 64
StyD4I CCNGG 4 cut(s) 98, 109, 123, 174
TaaI ACNGT 2 cut(s) 253, 396
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 193, 407
TatI WGTACW 1 cut(s) 208
TscAI CASTG 2 cut(s) 142, 401
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 467, 572
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 553, 569
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 142, 401
Van91I CCANNNNNTGG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.