MD07G1239200.v1.1

Pterin 4 alpha carbinolamine dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015136
Physical Location & Seq
Reverse (-)
31078682 .. 31080240
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1239200.v1.1.491

Sequence Viewer

Length: 630 bp
ATGGCCATGGCGACCACCATCCTTTCCTTACCCCATCTCTCCCTTCCACCTCACCGCTGCCACCACTACCTACCCAACTTAACCACCGTTCCAACTCGGGTTCGACTCGGCCTGCGAACTCAGGCTCTGGGCCATGACATGCTGGGGGATTTCGGTGCCAGAGACCCCTTTCCGGCTGAGATAGCGAGTGGGTTTGGTGAGAAGGTGCTGGGCAGCGGCAACACCGAGCACAAAATCCTCATCCCCAATTTGTCTGCTCTCTCTCTGTCCCAGTTAGACTGCAGCCCCGTCTCTCCCCTCCAGCCTCCTATGTCGGAGGACGATGCCAAGGAGCTCCTCAGAAAGGTTGTTGGGTGGAGATTGATAGTGGGAGAAGGTGGGCTGAAATTGCAGTGCCTGTGGAAGTTGAGAGATTATCAATGTGGGGTTGAACTCATCAACAGGATTTATAAGGTTGTAGATTCTGCAGGGCACTTCCCAAACCTTCACTTGGAGCAACCCAACCAAGTTAGAGCAGAGCTATGTACATCTTCCATCGGAGGATTGAGCATGAATGATTTCATCGTGGCTGCCAGAATAGATGACATAAAAACATCAGATCTTGTGCCCAGAAAAAGAGTCTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Pterin_4a

Protein Analysis

210

Amino Acids

23.03

Weight (kDa)

7.72

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pterin_4a PF01329 103 - 196 1.6e-19 Pterin 4 alpha carbinolamine dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51110 AT5G51110
fragaria_vesca FvH4_7g26390
malus_domestica MD07G1239200.v1.1
prunus_persica Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis pycom07g21520
rosa_chinensis RchiOBHm_Chr1g0372941
rosa_laevigata RLG00000026864
rosa_multiflora Rmu_ssc0000425.1_g000015
rosa_roxburghii Rroxscaffold_4G00284590
rosa_rugosa Rorug01G0375100
rosa_samantha Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana Rw1G033800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 2 cut(s) 55, 216
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 3 cut(s) 172, 343, 490
AgsI TTSAA 1 cut(s) 431
AluBI AGCT 2 cut(s) 334, 520
AluI AGCT 2 cut(s) 334, 520
Alw21I GWGCWC 2 cut(s) 231, 336
Alw26I GTCTC 2 cut(s) 156, 295
AlwNI CAGNNNCTG 2 cut(s) 127, 397
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 3 cut(s) 3, 109, 130
ApeKI GCWGC 4 cut(s) 57, 213, 282, 569
Asp700I GAANNNNTTC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 44, 209
AvaI CYCGRG 1 cut(s) 96
BaeGI GKGCMC 2 cut(s) 474, 609
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 231, 336
BbvI GCAGC 4 cut(s) 44, 225, 294, 556
BccI CCATC 3 cut(s) 26, 42, 542
BcoDI GTCTC 2 cut(s) 156, 295
BfmI CTRYAG 2 cut(s) 280, 465
BglII AGATCT 1 cut(s) 598
BisI GCNGC 5 cut(s) 58, 214, 217, 283, 570
BlsI GCNGC 5 cut(s) 59, 215, 218, 284, 571
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 6, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 343, 490
Bse1I ACTGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 6, 327
BseGI GGATG 2 cut(s) 18, 240
BseLI CCNNNNNNNGG 3 cut(s) 172, 343, 490
BseMII CTCAG 3 cut(s) 134, 168, 352
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 2 cut(s) 474, 609
BseXI GCAGC 4 cut(s) 44, 225, 294, 556
BseYI CCCAGC 2 cut(s) 142, 208
BshFI GGCC 3 cut(s) 5, 111, 132
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 231, 336
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 172, 343, 490
BsmAI GTCTC 2 cut(s) 156, 295
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 3 cut(s) 5, 111, 132
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 4 cut(s) 231, 336, 474, 609
Bsp1407I TGTACA 1 cut(s) 524
Bsp143I GATC 1 cut(s) 598
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 55, 216
BspANI GGCC 3 cut(s) 5, 111, 132
BspCNI CTCAG 3 cut(s) 133, 169, 351
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 2 cut(s) 284, 469
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 524
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 6, 327
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 6, 327
Bst4CI ACNGT 1 cut(s) 88
BstAUI TGTACA 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 120, 177, 338, 627
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 18, 240
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 2 cut(s) 156, 295
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 2 cut(s) 182, 388
BstNSI RCATGY 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 280, 465
BstSLI GKGCMC 2 cut(s) 474, 609
BstV1I GCAGC 4 cut(s) 44, 225, 294, 556
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 3 cut(s) 5, 111, 132
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 18, 240
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 2 cut(s) 127, 397
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 525
CviAII CATG 4 cut(s) 7, 134, 139, 550
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 4 cut(s) 120, 177, 338, 627
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 6, 327
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 6, 327
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 6, 327
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 4 cut(s) 10, 137, 142, 553
FaiI YATR 8 cut(s) 8, 135, 140, 311, 450, 523, 551, 587
FaqI GGGAC 1 cut(s) 253
FatI CATG 4 cut(s) 6, 133, 138, 549
Fnu4HI GCNGC 5 cut(s) 58, 214, 217, 283, 570
FokI GGATG 2 cut(s) 5, 227
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 5 cut(s) 58, 214, 217, 283, 570
GluI GCNGC 5 cut(s) 58, 214, 217, 283, 570
GsaI CCCAGC 2 cut(s) 146, 212
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 3 cut(s) 5, 111, 132
HapII CCGG 1 cut(s) 173
Hin1II CATG 4 cut(s) 10, 137, 142, 553
HinfI GANTC 3 cut(s) 105, 461, 618
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 44, 209
Hpy188I TCNGA 4 cut(s) 316, 341, 539, 598
HpyAV CCTTC 4 cut(s) 53, 196, 368, 494
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 282, 391, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 388
HpyF3I CTNAG 4 cut(s) 120, 177, 338, 627
Hsp92II CATG 4 cut(s) 10, 137, 142, 553
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 3 cut(s) 331, 339, 493
Lsp1109I GCAGC 4 cut(s) 44, 225, 294, 556
LweI GCATC 1 cut(s) 313
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 1 cut(s) 522
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 4 cut(s) 231, 336, 474, 609
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 247, 386
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 99, 627
MmeI TCCRAC 2 cut(s) 116, 294
MnlI CCTC 7 cut(s) 60, 248, 308, 310, 315, 347, 533
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 57, 216
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 182, 388
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 598
NlaIII CATG 4 cut(s) 10, 137, 142, 553
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 87
NspI RCATGY 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 5 cut(s) 59, 215, 218, 284, 571
PleI GAGTC 2 cut(s) 99, 626
PpsI GAGTC 2 cut(s) 99, 626
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 336
PspFI CCCAGC 2 cut(s) 142, 208
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 2 cut(s) 284, 469
PstNI CAGNNNCTG 2 cut(s) 127, 397
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 5 cut(s) 58, 214, 217, 283, 570
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 2 cut(s) 99, 627
SduI GDGCHC 4 cut(s) 231, 336, 474, 609
SetI ASST 9 cut(s) 52, 72, 207, 336, 348, 379, 456, 486, 522
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 2 cut(s) 280, 465
Sse9I AATT 2 cut(s) 247, 386
SsiI CCGC 2 cut(s) 55, 216
SstI GAGCTC 1 cut(s) 336
StyI CCWWGG 2 cut(s) 6, 327
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 247, 386
TatI WGTACW 1 cut(s) 524
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 398
TseI GCWGC 4 cut(s) 57, 213, 282, 569
TspDTI ATGAA 2 cut(s) 550, 566
TspRI CASTG 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 341
XceI RCATGY 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.