Prupe.2G268000_v2.0.a1

Pterin 4 alpha carbinolamine dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015136
Physical Location & Seq
Reverse (-)
27363428 .. 27364762
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G268000.2

Sequence Viewer

Length: 624 bp
ATGGCCACCGCAAACCTTTCCGTACCCCTTCTCTCTCTTCCACGTCACCACCACCTCAACCTTCACCCTAACCTCATCACCGTTCCAACTCGGCTTCGACTTGGCCTGCGAACTCAGGCTCTGGGCAATGACATGCTGGGCGATTTTGGCGCTAGAGACCCCTTCCCAGCTGAGATAGCAAGTGGGTTTGGTGAGAAGGTGTTGGGCAACGGCAACACAGAGCACAAGATTCTCATCCCCAATCTCTCTTCTCTCTCTCTGTCCCAGCTAGACTGCAGCGCTGTCTCTCCTCTCCAGCCTCCTATGCCTGAAGACGATGCCCAGAAGCTCCTCAGAAAGGTTGTTGGGTGGAGATTGATAGTTGGAGAAGGTGAGCTCAAATTACAGTGTCTTTGGAAATTGAGAGATTATAAATGTGGGGTTGAGCTCATCAACAGGATTTATAAGGTTGCAGAAGCTGCAGGGCATTTCCCAAATCTTCACTTGGAGCAACCCAATCAAGTTAGAGCAGAGCTATGGACATCTTCCATTGGAGGATTGAGCATGAATGATTTCATTGTAGCTGCCAAAATAGATGATATAAAAACATCAGATCTTGTGCCCAGAAAAAGAGTTTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Pterin_4a

Protein Analysis

208

Amino Acids

22.89

Weight (kDa)

8.47

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51110 AT5G51110
fragaria_vesca FvH4_7g26390
malus_domestica MD07G1239200.v1.1
prunus_persica Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis pycom07g21520
rosa_chinensis RchiOBHm_Chr1g0372941
rosa_laevigata RLG00000026864
rosa_multiflora Rmu_ssc0000425.1_g000015
rosa_roxburghii Rroxscaffold_4G00284590
rosa_rugosa Rorug01G0375100
rosa_samantha Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana Rw1G033800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 411, 444
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 337
AjiI CACGTC 1 cut(s) 44
AjuI GAANNNNNNNTTGG 1 cut(s) 598
AluBI AGCT 8 cut(s) 170, 268, 328, 376, 427, 458, 514, 563
AluI AGCT 8 cut(s) 170, 268, 328, 376, 427, 458, 514, 563
Alw21I GWGCWC 3 cut(s) 225, 378, 429
Alw26I GTCTC 2 cut(s) 150, 289
AlwNI CAGNNNCTG 2 cut(s) 121, 458
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 2 cut(s) 3, 103
ApeKI GCWGC 3 cut(s) 276, 458, 563
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 152, 281
AsuHPI GGTGA 5 cut(s) 38, 56, 70, 203, 383
BaeGI GKGCMC 1 cut(s) 603
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 378, 429
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 3 cut(s) 225, 378, 429
BbvI GCAGC 3 cut(s) 288, 445, 550
BceAI ACGGC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 150, 289
BfaI CTAG 2 cut(s) 153, 269
BfmI CTRYAG 2 cut(s) 274, 459
BfoI RGCGCY 2 cut(s) 153, 282
BglII AGATCT 1 cut(s) 592
BisI GCNGC 3 cut(s) 277, 459, 564
BlsI GCNGC 3 cut(s) 278, 460, 565
BmgBI CACGTC 1 cut(s) 44
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 233
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 128, 162, 346
BseRI GAGGAG 2 cut(s) 279, 320
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 3 cut(s) 288, 445, 550
BseYI CCCAGC 3 cut(s) 136, 166, 264
BshFI GGCC 2 cut(s) 5, 105
BsiHKAI GWGCWC 3 cut(s) 225, 378, 429
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 150, 289
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 5, 105
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 4 cut(s) 225, 378, 429, 603
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 5, 105
BspCNI CTCAG 3 cut(s) 127, 163, 345
BspMAI CTGCAG 2 cut(s) 278, 463
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 133
BssMI GATC 1 cut(s) 592
Bst4CI ACNGT 2 cut(s) 82, 387
Bst6I CTCTTC 2 cut(s) 42, 253
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 4 cut(s) 114, 171, 332, 621
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 234
BstH2I RGCGCY 2 cut(s) 153, 282
BstHHI GCGC 2 cut(s) 152, 281
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 2 cut(s) 150, 289
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 4 cut(s) 147, 176, 304, 458
BstNSI RCATGY 1 cut(s) 136
BstSFI CTRYAG 2 cut(s) 274, 459
BstSLI GKGCMC 1 cut(s) 603
BstV1I GCAGC 3 cut(s) 288, 445, 550
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 2 cut(s) 5, 105
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 107
CaiI CAGNNNCTG 2 cut(s) 121, 458
CfoI GCGC 2 cut(s) 152, 281
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 133, 544
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 4 cut(s) 114, 171, 332, 621
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 42, 253
EarI CTCTTC 2 cut(s) 42, 253
Ecl136II GAGCTC 2 cut(s) 376, 427
Eco24I GRGCYC 2 cut(s) 378, 429
Eco31I GGTCTC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 2 cut(s) 376, 427
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 2 cut(s) 376, 427
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoT38I GRGCYC 2 cut(s) 378, 429
FaeI CATG 2 cut(s) 136, 547
FaiI YATR 7 cut(s) 134, 305, 411, 444, 517, 545, 581
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 132, 543
Fnu4HI GCNGC 3 cut(s) 277, 459, 564
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 2 cut(s) 378, 429
Fsp4HI GCNGC 3 cut(s) 277, 459, 564
FspBI CTAG 2 cut(s) 153, 269
GlaI GCGC 2 cut(s) 151, 280
GluI GCNGC 3 cut(s) 277, 459, 564
GsaI CCCAGC 3 cut(s) 140, 170, 268
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 2 cut(s) 153, 282
HaeIII GGCC 2 cut(s) 5, 105
HhaI GCGC 2 cut(s) 152, 281
Hin1II CATG 2 cut(s) 136, 547
Hin6I GCGC 2 cut(s) 150, 279
HinP1I GCGC 2 cut(s) 150, 279
HinfI GANTC 1 cut(s) 229
HphI GGTGA 5 cut(s) 38, 56, 70, 203, 383
Hpy188I TCNGA 2 cut(s) 335, 592
HpyAV CCTTC 5 cut(s) 38, 71, 172, 190, 362
HpyCH4III ACNGT 2 cut(s) 82, 387
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 276, 452, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 176, 304, 458
HpyF3I CTNAG 4 cut(s) 114, 171, 332, 621
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 136, 547
HspAI GCGC 2 cut(s) 150, 279
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 2 cut(s) 333, 487
Lsp1109I GCAGC 3 cut(s) 288, 445, 550
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 153, 269
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 5 cut(s) 29, 240, 323, 470, 516
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 4 cut(s) 225, 378, 429, 603
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 380, 398
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 110, 343
MnlI CCTC 6 cut(s) 65, 83, 300, 309, 341, 527
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 147, 176, 304, 458
NdeII GATC 1 cut(s) 592
NlaIII CATG 2 cut(s) 136, 547
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 278, 460, 565
PsiI TTATAA 2 cut(s) 411, 444
Psp124BI GAGCTC 2 cut(s) 378, 429
PspFI CCCAGC 3 cut(s) 136, 166, 264
PstI CTGCAG 2 cut(s) 278, 463
PstNI CAGNNNCTG 2 cut(s) 121, 458
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SacI GAGCTC 2 cut(s) 378, 429
SatI GCNGC 3 cut(s) 277, 459, 564
Sau3AI GATC 1 cut(s) 592
SduI GDGCHC 4 cut(s) 225, 378, 429, 603
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 274, 459
Sse9I AATT 2 cut(s) 380, 398
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 153, 269
SstI GAGCTC 2 cut(s) 378, 429
TaaI ACNGT 2 cut(s) 82, 387
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 380, 398
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 276, 458, 563
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 544, 560
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 335
XceI RCATGY 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 2 cut(s) 153, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.