RLG00000026864

Pterin 4 alpha carbinolamine dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015136
Physical Location & Seq
Forward (+)
6595129 .. 6596570
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026864

Sequence Viewer

Length: 633 bp
ATGGCCACCACCAACCTCTCATTCCCTCACTTCTCTCTTCCATGTCACCACCACCACCACCACCACCACCACCACCCCAACTTCTTCACTCTTCCGACTCGGGCCCGACCCGGCCCGAGAACCCAGGCTCTGGGCCATGACATGATTGGAGACTTTGGGGCCAGAGACCCGTACCCGGCAGAGATAGCCAGTGAGTTTGGAGACAAAGTACTGGGATTCGAGAACTCAGAGCACAAGATCCTCATCCCAACTGTGTCTGCTTCCTCTTTAGCCCAGCAAGAATGCACCCCTGTCTCTCCTCTCCAGGCTCCTATGCTTGAAGAGGACGCTCAACAGCTCCTCAGGAAGGTTCTTGGGTGGAGATTGATAGTTGGAGAAGATGGGCTCAAACTACAGTGCTTGTGGAAATTGAGAGATTACCAATGTGGGGTTGAACTCATCAATAGGGTTTATAAGGTTGTGGAAGCTGCAGGGCATTTCCCAAATCTTCACTTGGAGCAACCCAATCAAGTTAGAGCAGAGCTATGGACATCTTCCGTTGGAGGATTGACCATGAATGATTTCATTGTAGCTGCTAAGATAGATGAGATCAAAACATCGGATCTCGTGCCCATGAGAAGAGCTTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Pterin_4a

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

6.41

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pterin_4a PF01329 104 - 197 1.9e-21 Pterin 4 alpha carbinolamine dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51110 AT5G51110
fragaria_vesca FvH4_7g26390
malus_domestica MD07G1239200.v1.1
prunus_persica Prupe.2G268000_v2.0.a1 Prupe.2G268000_v2.0.a1
pyrus_communis pycom07g21520
rosa_chinensis RchiOBHm_Chr1g0372941
rosa_laevigata RLG00000026864
rosa_multiflora Rmu_ssc0000425.1_g000015
rosa_roxburghii Rroxscaffold_4G00284590
rosa_rugosa Rorug01G0375100
rosa_samantha Rh1AG383600 Rh1BG347500 Rh1DG378400
rosa_wichuraiana Rw1G033800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 130
AclWI GGATC 2 cut(s) 232, 609
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 173, 210
AfiI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
AgsI TTSAA 2 cut(s) 320, 434
AjnI CCWGG 2 cut(s) 123, 303
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 5 cut(s) 337, 467, 523, 572, 623
AluI AGCT 5 cut(s) 337, 467, 523, 572, 623
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 4 cut(s) 144, 159, 195, 298
AlwI GGATC 2 cut(s) 232, 609
AlwNI CAGNNNCTG 1 cut(s) 130
Ama87I CYCGRG 2 cut(s) 99, 115
AoxI GGCC 5 cut(s) 3, 102, 112, 133, 159
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 467, 572
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 5 cut(s) 102, 103, 113, 133, 159
AsuC2I CCSGG 2 cut(s) 111, 176
AsuHPI GGTGA 1 cut(s) 38
AvaI CYCGRG 2 cut(s) 99, 115
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 2 cut(s) 106, 612
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 106, 387
BauI CACGAG 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 454, 559
BccI CCATC 1 cut(s) 374
BciT130I CCWGG 2 cut(s) 125, 305
BcnI CCSGG 2 cut(s) 111, 176
BcoDI GTCTC 4 cut(s) 144, 159, 195, 298
BfmI CTRYAG 2 cut(s) 392, 468
BisI GCNGC 2 cut(s) 468, 573
BlsI GCNGC 2 cut(s) 469, 574
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 4 cut(s) 111, 125, 176, 305
BmeT110I CYCGRG 2 cut(s) 99, 115
BmgT120I GGNCC 5 cut(s) 102, 103, 113, 133, 159
BmiI GGNNCC 3 cut(s) 104, 160, 309
BmrFI CCNGG 4 cut(s) 111, 125, 176, 305
BmrI ACTGGG 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 111, 176
BsaBI GATNNNNATC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
Bse1I ACTGG 2 cut(s) 189, 216
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 125, 305
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
BseMII CTCAG 2 cut(s) 240, 355
BseNI ACTGG 2 cut(s) 189, 216
BseRI GAGGAG 2 cut(s) 288, 329
BseSI GKGCMC 2 cut(s) 106, 612
BseXI GCAGC 2 cut(s) 454, 559
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 5 cut(s) 5, 104, 114, 135, 161
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 2 cut(s) 99, 115
BsiSI CCGG 2 cut(s) 111, 176
BslI CCNNNNNNNGG 4 cut(s) 130, 175, 346, 427
BsmAI GTCTC 4 cut(s) 144, 159, 195, 298
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 5 cut(s) 5, 104, 114, 135, 161
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 2 cut(s) 99, 115
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 4 cut(s) 106, 234, 387, 612
Bsp143I GATC 3 cut(s) 237, 588, 601
BspANI GGCC 5 cut(s) 5, 104, 114, 135, 161
BspCNI CTCAG 2 cut(s) 239, 354
BspLI GGNNCC 3 cut(s) 104, 160, 309
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 232, 609
BspQI GCTCTTC 1 cut(s) 613
BspTNI GGTCTC 1 cut(s) 159
BsrI ACTGG 2 cut(s) 189, 216
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 237, 588, 601
BssSI CACGAG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 2 cut(s) 125, 305
Bst4CI ACNGT 2 cut(s) 253, 396
Bst6I CTCTTC 4 cut(s) 42, 96, 315, 613
BstDEI CTNAG 4 cut(s) 226, 341, 576, 630
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 3 cut(s) 240, 591, 604
BstMAI GTCTC 4 cut(s) 144, 159, 195, 298
BstMBI GATC 3 cut(s) 237, 588, 601
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 125, 305
BstSCI CCNGG 4 cut(s) 109, 123, 174, 303
BstSFI CTRYAG 2 cut(s) 392, 468
BstSLI GKGCMC 2 cut(s) 106, 612
BstV1I GCAGC 2 cut(s) 454, 559
BstX2I RGATCY 2 cut(s) 237, 601
BstYI RGATCY 2 cut(s) 237, 601
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 5 cut(s) 5, 104, 114, 135, 161
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 196, 401
CaiI CAGNNNCTG 1 cut(s) 130
Cfr13I GGNCC 5 cut(s) 102, 103, 113, 133, 159
CseI GACGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 172, 209
CviAII CATG 5 cut(s) 42, 137, 142, 553, 613
CviQI GTAC 2 cut(s) 172, 209
DdeI CTNAG 4 cut(s) 226, 341, 576, 630
DpnI GATC 3 cut(s) 239, 590, 603
DpnII GATC 3 cut(s) 237, 588, 601
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 42, 96, 315, 613
EarI CTCTTC 4 cut(s) 42, 96, 315, 613
Eco24I GRGCYC 2 cut(s) 106, 387
Eco31I GGTCTC 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 341
Eco88I CYCGRG 2 cut(s) 99, 115
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 123, 303
EcoT38I GRGCYC 2 cut(s) 106, 387
FaeI CATG 5 cut(s) 45, 140, 145, 556, 616
FaiI YATR 8 cut(s) 43, 138, 143, 314, 453, 526, 554, 614
FatI CATG 5 cut(s) 41, 136, 141, 552, 612
Fnu4HI GCNGC 2 cut(s) 468, 573
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 2 cut(s) 106, 387
Fsp4HI GCNGC 2 cut(s) 468, 573
GluI GCNGC 2 cut(s) 468, 573
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 5 cut(s) 5, 104, 114, 135, 161
HapII CCGG 2 cut(s) 111, 176
HgaI GACGC 1 cut(s) 335
Hin1II CATG 5 cut(s) 45, 140, 145, 556, 616
HinfI GANTC 2 cut(s) 97, 216
HpaII CCGG 2 cut(s) 111, 176
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 96, 229, 601
Hpy188III TCNNGA 2 cut(s) 220, 343
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 253, 396
HpyCH4V TGCA 2 cut(s) 285, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 4 cut(s) 226, 341, 576, 630
Hsp92II CATG 5 cut(s) 45, 140, 145, 556, 616
Kzo9I GATC 3 cut(s) 237, 588, 601
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 3 cut(s) 313, 342, 496
Lsp1109I GCAGC 2 cut(s) 454, 559
MaeIII GTNAC 1 cut(s) 44
MalI GATC 3 cut(s) 239, 590, 603
MboI GATC 3 cut(s) 237, 588, 601
MboII GAAGA 8 cut(s) 29, 76, 83, 332, 389, 479, 525, 630
MflI RGATCY 2 cut(s) 237, 601
MhlI GDGCHC 4 cut(s) 106, 234, 387, 612
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 407
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 3 cut(s) 119, 352, 520
MnlI CCTC 8 cut(s) 26, 36, 251, 274, 309, 316, 350, 536
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 111, 176
MspR9I CCNGG 4 cut(s) 111, 125, 176, 305
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 2 cut(s) 125, 305
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 2 cut(s) 111, 176
NdeII GATC 3 cut(s) 237, 588, 601
NlaIII CATG 5 cut(s) 45, 140, 145, 556, 616
NlaIV GGNNCC 3 cut(s) 104, 160, 309
NmuCI GTSAC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 613
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 216
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 469, 574
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 123, 303
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 123, 303
PspN4I GGNNCC 3 cut(s) 104, 160, 309
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 5 cut(s) 102, 103, 113, 133, 159
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 237, 601
RsaI GTAC 2 cut(s) 173, 210
RsaNI GTAC 2 cut(s) 172, 209
SapI GCTCTTC 1 cut(s) 613
SatI GCNGC 2 cut(s) 468, 573
Sau3AI GATC 3 cut(s) 237, 588, 601
Sau96I GGNCC 5 cut(s) 102, 103, 113, 133, 159
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 4 cut(s) 111, 125, 176, 305
SduI GDGCHC 4 cut(s) 106, 234, 387, 612
SetI ASST 8 cut(s) 18, 339, 351, 459, 469, 525, 574, 625
SfcI CTRYAG 2 cut(s) 392, 468
Sse9I AATT 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 109, 123, 174, 303
TaaI ACNGT 2 cut(s) 253, 396
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 407
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 216
TscAI CASTG 2 cut(s) 196, 401
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 467, 572
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 553, 569
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 2 cut(s) 196, 401
Van91I CCANNNNNTGG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.