AT5G52120

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016516
Physical Location & Seq
Reverse (-)
21176377 .. 21180474
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52120.1

Sequence Viewer

Length: 876 bp
ATGGGGGCGGCTTCATCGAGCATCGTCCGATCCGAACCTTTTGCCGGAAAGTTATGCGGCCTCGAAGATGTGCCTGAGAACTGTATAACAGCAATGTTCATGTACATGGAGCCACCGGAGATCTGCCTGCTTGCTAGGGTAAATAAATCATTTCATAGGGCGTCGAGATCCGATGCCGTGTGGGAAGACAAGCTTCCTAGTAACTACAAGTTTCTGGTCCGAAGAATTCTTGAAGATCAACAACAAGTAGGAGTAAAAGACAAACTTATTTACCGCAAGAAAGAGATCTATGCAAGGCTTTGCCGACCAAACCTCTTCGACACCGGCACAAAGGAAGCATGGTTGGACAAGAGAAGTGGGAAAGTGTTTTTGGCGATATCACCAAAGGCAATGAAGATAACCGGCATTGATGATCGCCGATATTGGGAACATATTTCTTCCGATGAATCCAGATTTGGATCAATAACTTATCTCCGGCAAATATGGTGGTTAGAAGCAGTTGGAAAAATCAGATTCGAATTTGCACCCGGAAAATACAGTTTACTTTTCAAGATACAATTAGGCAAACCTATTAGAAAGTGTGGGAGGAAAACATGTAGTTTGGACCAAGTTCATGGCTGGGACATCAAACCGGTCCGGTTTCAGTTGTCTACATCGGATGGCCAATGCGCTATGTCGGAACGACATTTGGATGAGTCGGGGAGGTGGGTTTATCATCATGCGGGTGACTTCGTCGTAGAGAATCAGAACTCACCCGTTTGGGTCAAATTCTCTATGCTCCAGATAGATTGTACACATACCAAAGGTGGTTTATGTTTAGATTGTGTGATCATATGTCCATTTGAGTATAGAGGGAAATACAAATATTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

291

Amino Acids

33.63

Weight (kDa)

9.02

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 124 - 280 5e-34 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52120
fragaria_vesca FvH4_7g29070 FvH4_7g29070
malus_domestica MD01G1197200.v1.1
prunus_persica Prupe.2G290600_v2.0.a1
pyrus_communis pycom01g20760
rosa_chinensis RchiOBHm_Chr1g0376791
rosa_roxburghii Rroxscaffold_4G00281730
rosa_rugosa Rorug01G0398400
rosa_samantha Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana Rw1G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 650
AciI CCGC 4 cut(s) 8, 57, 274, 722
AclWI GGATC 3 cut(s) 24, 162, 466
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 3 cut(s) 225, 518, 767
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 104, 793
AfiI CCNNNNNNNGG 2 cut(s) 44, 424
AflIII ACRYGT 1 cut(s) 593
AgeI ACCGGT 1 cut(s) 631
AgsI TTSAA 2 cut(s) 233, 550
AjuI GAANNNNNNNTTGG 4 cut(s) 353, 385, 438, 470
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
AlwI GGATC 3 cut(s) 24, 162, 466
AoxI GGCC 2 cut(s) 58, 661
ApoI RAATTY 3 cut(s) 225, 518, 767
AsiGI ACCGGT 1 cut(s) 631
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 3 cut(s) 217, 604, 634
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 372, 737, 744
AsuII TTCGAA 1 cut(s) 516
AvaII GGWCC 3 cut(s) 217, 604, 634
BalI TGGCCA 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 192
BccI CCATC 1 cut(s) 653
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 528
BfaI CTAG 2 cut(s) 135, 198
BglII AGATCT 2 cut(s) 120, 285
BisI GCNGC 2 cut(s) 9, 58
BlsI GCNGC 2 cut(s) 10, 59
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 3 cut(s) 217, 604, 634
BmgT120I GGNCC 3 cut(s) 217, 604, 634
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 30, 163
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 764
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 457
BsaHI GRCGYC 1 cut(s) 161
BsaWI WCCGGW 3 cut(s) 115, 631, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 424
Bse118I RCCGGY 3 cut(s) 323, 401, 631
Bse3DI GCAATG 2 cut(s) 99, 396
Bse8I GATNNNNATC 1 cut(s) 457
BseGI GGATG 2 cut(s) 664, 697
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 44, 424
BseMI GCAATG 2 cut(s) 99, 396
BseMII CTCAG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 618
BshFI GGCC 2 cut(s) 60, 663
BshTI ACCGGT 1 cut(s) 631
BsiSI CCGG 8 cut(s) 45, 116, 324, 402, 475, 528, 632, 637
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 44, 424
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 2 cut(s) 60, 663
Bsp119I TTCGAA 1 cut(s) 516
Bsp1407I TGTACA 2 cut(s) 102, 791
Bsp143I GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
BspACI CCGC 4 cut(s) 8, 57, 274, 722
BspANI GGCC 2 cut(s) 60, 663
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 3 cut(s) 24, 162, 466
BspT104I TTCGAA 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 99, 396
BsrFI RCCGGY 3 cut(s) 323, 401, 631
BsrGI TGTACA 2 cut(s) 102, 791
BssAI RCCGGY 3 cut(s) 323, 401, 631
BssMI GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
BssNI GRCGYC 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 83, 539
Bst6I CTCTTC 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 161
BstAUI TGTACA 2 cut(s) 102, 791
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 128, 132
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 664, 697
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 8 cut(s) 32, 123, 170, 238, 288, 415, 461, 831
BstMBI GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
BstNSI RCATGY 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 3 cut(s) 120, 167, 285
BstXI CCANNNNNNTGG 1 cut(s) 614
BstYI RGATCY 3 cut(s) 120, 167, 285
BsuRI GGCC 2 cut(s) 60, 663
BtsCI GGATG 2 cut(s) 664, 697
Cac8I GCNNGC 2 cut(s) 128, 132
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 3 cut(s) 323, 401, 631
Cfr13I GGNCC 3 cut(s) 217, 604, 634
CpoI CGGWCCG 1 cut(s) 634
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 103, 792
CspAI ACCGGT 1 cut(s) 631
CspCI CAANNNNNGTGG 4 cut(s) 337, 372, 467, 502
CspI CGGWCCG 1 cut(s) 634
CviAII CATG 6 cut(s) 100, 106, 339, 594, 614, 719
CviJI RGCY 7 cut(s) 11, 60, 112, 193, 298, 618, 663
CviKI_1 RGCY 7 cut(s) 11, 60, 112, 193, 298, 618, 663
CviQI GTAC 2 cut(s) 103, 792
DdeI CTNAG 1 cut(s) 75
DpnI GATC 8 cut(s) 31, 122, 169, 237, 287, 414, 460, 830
DpnII GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 3 cut(s) 217, 604, 634
EcoRI GAATTC 1 cut(s) 225
EcoRV GATATC 1 cut(s) 378
FaeI CATG 6 cut(s) 103, 109, 342, 597, 617, 722
FalI AAGNNNNNCTT 4 cut(s) 177, 209, 249, 281
FaqI GGGAC 1 cut(s) 635
FatI CATG 6 cut(s) 99, 105, 338, 593, 613, 718
FauI CCCGC 1 cut(s) 715
FauNDI CATATG 1 cut(s) 833
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 9, 58
FokI GGATG 2 cut(s) 671, 704
Fsp4HI GCNGC 2 cut(s) 9, 58
FspBI CTAG 2 cut(s) 135, 198
GlaI GCGC 1 cut(s) 670
GluI GCNGC 2 cut(s) 9, 58
GsaI CCCAGC 1 cut(s) 622
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 2 cut(s) 60, 663
HapII CCGG 8 cut(s) 45, 116, 324, 402, 475, 528, 632, 637
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 6 cut(s) 103, 109, 342, 597, 617, 722
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 446, 513, 695, 742
HpaII CCGG 8 cut(s) 45, 116, 324, 402, 475, 528, 632, 637
HphI GGTGA 3 cut(s) 372, 737, 744
Hpy166II GTNNAC 3 cut(s) 542, 651, 794
Hpy188III TCNNGA 5 cut(s) 165, 230, 450, 550, 781
Hpy8I GTNNAC 3 cut(s) 542, 651, 794
Hpy99I CGWCG 2 cut(s) 166, 737
HpyCH4III ACNGT 2 cut(s) 83, 539
HpyCH4V TGCA 2 cut(s) 293, 524
HpyF3I CTNAG 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 6 cut(s) 103, 109, 342, 597, 617, 722
HspAI GCGC 1 cut(s) 669
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
LmnI GCTCC 2 cut(s) 109, 783
LweI GCATC 2 cut(s) 30, 163
MaeI CTAG 2 cut(s) 135, 198
MaeIII GTNAC 2 cut(s) 200, 725
MalI GATC 8 cut(s) 31, 122, 169, 237, 287, 414, 460, 830
MboI GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
MboII GAAGA 7 cut(s) 77, 197, 234, 245, 307, 406, 429
MflI RGATCY 3 cut(s) 120, 167, 285
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 4 cut(s) 225, 518, 557, 767
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 3 cut(s) 324, 481, 657
MnlI CCTC 5 cut(s) 71, 323, 579, 696, 845
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 1 cut(s) 874
MslI CAYNNNNRTG 3 cut(s) 104, 690, 723
Msp20I TGGCCA 1 cut(s) 663
MspI CCGG 8 cut(s) 45, 116, 324, 402, 475, 528, 632, 637
MspR9I CCNGG 1 cut(s) 528
NciI CCSGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 833
NdeII GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
NlaIII CATG 6 cut(s) 103, 109, 342, 597, 617, 722
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 725
NspI RCATGY 1 cut(s) 597
NspV TTCGAA 1 cut(s) 516
PciI ACATGT 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 3 cut(s) 446, 513, 742
PflFI GACNNNGTC 1 cut(s) 731
PinAI ACCGGT 1 cut(s) 631
PkrI GCNGC 2 cut(s) 10, 59
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PscI ACATGT 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 3 cut(s) 217, 604, 634
PsuI RGATCY 3 cut(s) 120, 167, 285
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 2 cut(s) 104, 793
RsaNI GTAC 2 cut(s) 103, 792
RseI CAYNNNNRTG 3 cut(s) 104, 690, 723
Rsr2I CGGWCCG 1 cut(s) 634
RsrII CGGWCCG 1 cut(s) 634
SaqAI TTAA 1 cut(s) 874
SatI GCNGC 2 cut(s) 9, 58
Sau3AI GATC 8 cut(s) 29, 120, 167, 235, 285, 412, 458, 828
Sau96I GGNCC 3 cut(s) 217, 604, 634
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 528
SetI ASST 6 cut(s) 40, 195, 315, 571, 707, 808
SfaNI GCATC 2 cut(s) 30, 163
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 3 cut(s) 217, 604, 634
SmiMI CAYNNNNRTG 3 cut(s) 104, 690, 723
Sse9I AATT 4 cut(s) 225, 518, 557, 767
SsiI CCGC 4 cut(s) 8, 57, 274, 722
SspI AATATT 1 cut(s) 866
SspMI CTAG 2 cut(s) 135, 198
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 83, 539
TaqI TCGA 5 cut(s) 17, 63, 164, 318, 516
TasI AATT 4 cut(s) 225, 518, 557, 767
TatI WGTACW 2 cut(s) 102, 791
TauI GCSGC 2 cut(s) 11, 60
TfiI GAWTC 3 cut(s) 446, 513, 742
Tru1I TTAA 1 cut(s) 874
Tru9I TTAA 1 cut(s) 874
TseFI GTSAC 1 cut(s) 725
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 5 cut(s) 88, 143, 407, 459, 602
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 217, 604, 634
XapI RAATTY 3 cut(s) 225, 518, 767
XceI RCATGY 1 cut(s) 597
XmiI GTMKAC 1 cut(s) 650
XspI CTAG 2 cut(s) 135, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.