Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016516

Physical Location & Seq

Genomic Coordinates Reverse (-)

21487282 .. 21489787

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGGGCTGGTTACTCTATGTCTTCAATCAGTGCCAGCAGATCAGGTTCGCCGGATCATCCTCCAGATCAAGCTAAGACGGGTCTCGGAGACCTACCGGAAAGTTGTATCTCTTACATTCTTGCGTATTTGGATCCGCCGGAGATCTGTAAACTAGCGCAAGTGAATAGGGTGTTCCGGTCTGCTTCCTCTGCTGATTTTGTATGGCAATCAAAGCTCCCTTCAAACTACAAGTGCCTTCTTGAAAAATCATTAGCCCTTGATGAACACAATAGTAACCGTACTCCGAAGAAGGATTTATACTCAAGATTATGTCGGCCAAATCTGTTTGACAATGGCACCAAGGAAATTTGGTTGGACAAGAGTTGTGGATCTCATCCACAGGTTTGTGTGTCCATTTCATCAAAAGCATTACGGATAACTGGAATAGATGATCGAAGATATTGGAGTAATATTCCAACTGAGGAATCGAGGTTTAACAGAGTTGCATATCTTAAACAAATCTGGTGGCTTGAAGCACTAGGGGAGCTAGAGTTCGAGTTCCCACCGGGAAGCTATAGCCTTTACTTCCGGCTTCAACTCGGCAAGACTTGTTCAGGGAGATTTGGTCGACGAGTATGCAGCACTGATCTAGTACACGGCTGGGACAACAAGCCCGTCCGATTTCACTTATCAACGTCTGACGGCCAACGAGGTTTATCAGAGTATTATTTGCATGAACGATGCAGCTGGGTTCATTACCATGTTGGTGATTTCGTCAGCCACAGTCCGAAGCCTATGAAGATCAAATTTTCTATGATCCAAATTGATTGTACACACACCAAGGGTGGCCTCTGCTTAGACTCTGTGTTGATATGCCCAACCAAGTTAAGGGAGAAGCTAATGAAATGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

300

Amino Acids

33.96

Weight (kDa)

8.81

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	41 - 82	3.4e-08	F-box-like
F-box	PF00646	42 - 79	3.9e-06	F-box domain
PP2	PF14299	140 - 298	8e-38	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52120
fragaria_vesca	FvH4_7g29070 FvH4_7g29070
malus_domestica	MD01G1197200.v1.1
prunus_persica	Prupe.2G290600_v2.0.a1
pyrus_communis	pycom01g20760
rosa_chinensis	RchiOBHm_Chr1g0376791
rosa_roxburghii	Rroxscaffold_4G00281730
rosa_rugosa	Rorug01G0398400
rosa_samantha	Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana	Rw1G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	610
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	5 cut(s)	63, 128, 141, 379, 793
AcoI	YGGCCR	2 cut(s)	317, 685
AcsI	RAATTY	2 cut(s)	348, 788
AfaI	GTAC	3 cut(s)	283, 636, 814
AfiI	CCNNNNNNNGG	1 cut(s)	870
AgsI	TTSAA	5 cut(s)	27, 225, 245, 515, 578
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	6 cut(s)	74, 217, 529, 555, 729, 880
AluI	AGCT	6 cut(s)	74, 217, 529, 555, 729, 880
Alw26I	GTCTC	2 cut(s)	84, 89
AlwI	GGATC	5 cut(s)	63, 128, 141, 379, 793
AoxI	GGCC	3 cut(s)	317, 685, 829
ApeKI	GCWGC	2 cut(s)	621, 726
ApoI	RAATTY	2 cut(s)	348, 788
AspLEI	GCGC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	633, 738
BceAI	ACGGC	2 cut(s)	655, 700
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	84, 89
BfaI	CTAG	4 cut(s)	155, 521, 530, 632
BfmI	CTRYAG	1 cut(s)	556
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	2 cut(s)	622, 727
BlsI	GCNGC	2 cut(s)	623, 728
Bme1390I	CCNGG	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	135, 340
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	549
BsaI	GGTCTC	2 cut(s)	84, 89
BsaJI	CCNNGG	2 cut(s)	342, 822
BsaWI	WCCGGW	2 cut(s)	97, 177
BsaXI	ACNNNNNCTCC	4 cut(s)	518, 548, 592, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	870
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	342, 822
BseGI	GGATG	2 cut(s)	58, 376
BseLI	CCNNNNNNNGG	1 cut(s)	870
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	2 cut(s)	633, 738
BseYI	CCCAGC	2 cut(s)	642, 729
BshFI	GGCC	3 cut(s)	319, 687, 831
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	6 cut(s)	53, 98, 140, 178, 548, 571
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	870
BsmAI	GTCTC	2 cut(s)	84, 89
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	319, 687, 831
Bso31I	GGTCTC	2 cut(s)	84, 89
Bsp1407I	TGTACA	1 cut(s)	812
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	3 cut(s)	319, 687, 831
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	135, 340
BspPI	GGATC	5 cut(s)	63, 128, 141, 379, 793
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	2 cut(s)	84, 89
BsrGI	TGTACA	1 cut(s)	812
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	342, 822
BssT1I	CCWWGG	2 cut(s)	342, 822
Bst4CI	ACNGT	2 cut(s)	281, 767
BstAUI	TGTACA	1 cut(s)	812
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	75, 462, 838
BstF5I	GGATG	2 cut(s)	58, 376
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	84, 89
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 214
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	633, 738
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	3 cut(s)	133, 144, 371
BstYI	RGATCY	3 cut(s)	133, 144, 371
BsuRI	GGCC	3 cut(s)	319, 687, 831
BtsCI	GGATG	2 cut(s)	58, 376
BtsIMutI	CAGTG	2 cut(s)	37, 624
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	282, 635, 813
CspCI	CAANNNNNGTGG	4 cut(s)	349, 384, 488, 523
CviAII	CATG	2 cut(s)	716, 743
CviQI	GTAC	3 cut(s)	282, 635, 813
DdeI	CTNAG	3 cut(s)	75, 462, 838
EaeI	YGGCCR	2 cut(s)	317, 685
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	342, 822
Eco31I	GGTCTC	2 cut(s)	84, 89
EcoT14I	CCWWGG	2 cut(s)	342, 822
ErhI	CCWWGG	2 cut(s)	342, 822
FaeI	CATG	2 cut(s)	719, 746
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	2 cut(s)	715, 742
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	622, 727
FokI	GGATG	2 cut(s)	45, 363
Fsp4HI	GCNGC	2 cut(s)	622, 727
FspBI	CTAG	4 cut(s)	155, 521, 530, 632
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	622, 727
GsaI	CCCAGC	2 cut(s)	646, 733
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	319, 687, 831
HapII	CCGG	6 cut(s)	53, 98, 140, 178, 548, 571
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	719, 746
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	611
HindII	GTYRAC	1 cut(s)	611
HinfI	GANTC	2 cut(s)	467, 842
HpaII	CCGG	6 cut(s)	53, 98, 140, 178, 548, 571
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	4 cut(s)	152, 611, 637, 815
Hpy188I	TCNGA	6 cut(s)	89, 288, 662, 682, 703, 771
Hpy188III	TCNNGA	3 cut(s)	65, 242, 306
Hpy8I	GTNNAC	4 cut(s)	152, 611, 637, 815
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	231, 248, 286
HpyCH4III	ACNGT	2 cut(s)	281, 767
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	4 cut(s)	488, 621, 715, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 214
HpyF3I	CTNAG	3 cut(s)	75, 462, 838
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	2 cut(s)	719, 746
HspAI	GCGC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	222, 526
Lsp1109I	GCAGC	2 cut(s)	633, 738
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	4 cut(s)	155, 521, 530, 632
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	11, 275
MboII	GAAGA	4 cut(s)	15, 301, 450, 793
MflI	RGATCY	3 cut(s)	133, 144, 371
MluCI	AATT	3 cut(s)	348, 788, 804
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	2 cut(s)	336, 482
MnlI	CCTC	6 cut(s)	72, 199, 457, 465, 686, 842
MseI	TTAA	3 cut(s)	477, 495, 869
MslI	CAYNNNNRTG	2 cut(s)	741, 747
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	6 cut(s)	53, 98, 140, 178, 548, 571
MspR9I	CCNGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	191, 214
NciI	CCSGG	1 cut(s)	549
NlaIII	CATG	2 cut(s)	719, 746
NlaIV	GGNNCC	2 cut(s)	135, 340
NmeAIII	GCCGAG	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	623, 728
PleI	GAGTC	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	836
PspFI	CCCAGC	2 cut(s)	642, 729
PspN4I	GGNNCC	2 cut(s)	135, 340
PsuI	RGATCY	3 cut(s)	133, 144, 371
PvuII	CAGCTG	1 cut(s)	729
RsaI	GTAC	3 cut(s)	283, 636, 814
RsaNI	GTAC	3 cut(s)	282, 635, 813
RseI	CAYNNNNRTG	2 cut(s)	741, 747
SalI	GTCGAC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	477, 495, 869
SatI	GCNGC	2 cut(s)	622, 727
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	713
SfcI	CTRYAG	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	741, 747
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	348, 788, 804
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	4 cut(s)	155, 521, 530, 632
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	342, 822
TaaI	ACNGT	2 cut(s)	281, 767
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	4 cut(s)	436, 470, 537, 610
TasI	AATT	3 cut(s)	348, 788, 804
TatI	WGTACW	2 cut(s)	634, 812
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	477, 495, 869
Tru9I	TTAA	3 cut(s)	477, 495, 869
TscAI	CASTG	2 cut(s)	37, 631
TseI	GCWGC	2 cut(s)	621, 726
TspDTI	ATGAA	6 cut(s)	279, 390, 725, 732, 794, 899
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	37, 631
XapI	RAATTY	2 cut(s)	348, 788
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	4 cut(s)	155, 521, 530, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.