pycom01g20760

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016516
Physical Location & Seq
Forward (+)
19097405 .. 19097910
506 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20760.2

Sequence Viewer

Length: 375 bp
ATGGGGACTGGTTTCTCCTTCTTTTCTAGGGATATTCCCAGTTCTTCTCCTCCAACAAAACCTGGTCTTGGGGACTTACCAGAGAGTTGTGTTTCATCCATTCTTATGTCCTTGGATCCACTGGAGATTTGTAAATCGGCTCAGATTAACAAGGCTTTTCGTGCTGCTTCTTTGGCTGATTTTGTATGGGAGTCAAAGCTGCCTTCAAACTGTAAGTTTCTCGTCGACAAAGTTCTTGATCTTGAAAGTTTGCCCAAGAAAGAGTTATACGCTAGGTTGTGCCAGCCCAATCGTTTTGATGGTGGCACCAAGCTTGGTTGGATAAGAGTTGTGGACAACTTTTCTTGGCCATTTCATCAAAGGCTTTGCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

125

Amino Acids

13.8

Weight (kDa)

8.31

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52120
fragaria_vesca FvH4_7g29070 FvH4_7g29070
malus_domestica MD01G1197200.v1.1
prunus_persica Prupe.2G290600_v2.0.a1
pyrus_communis pycom01g20760
rosa_chinensis RchiOBHm_Chr1g0376791
rosa_roxburghii Rroxscaffold_4G00281730
rosa_rugosa Rorug01G0398400
rosa_samantha Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana Rw1G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 369
AclWI GGATC 2 cut(s) 110, 123
AcoI YGGCCR 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 207, 245
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 2 cut(s) 199, 313
AluI AGCT 2 cut(s) 199, 313
AlwI GGATC 2 cut(s) 110, 123
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 164, 199
BalI TGGCCA 1 cut(s) 349
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 151, 186
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 2 cut(s) 27, 273
BisI GCNGC 2 cut(s) 165, 200
BlsI GCNGC 2 cut(s) 166, 201
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 117, 307
BmrFI CCNGG 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 13, 39, 126
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 3 cut(s) 13, 39, 126
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 151, 186
BshFI GGCC 1 cut(s) 349
BshNI GGYRCC 1 cut(s) 305
BslFI GGGAC 2 cut(s) 19, 86
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 19, 86
BsnI GGCC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 115, 238
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 117, 307
BspPI GGATC 2 cut(s) 110, 123
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 3 cut(s) 13, 39, 126
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 115, 238
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 2 cut(s) 118, 241
BstMBI GATC 2 cut(s) 115, 238
BstMWI GCNNNNNNNGC 2 cut(s) 161, 173
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 151, 186
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 61
CviJI RGCY 8 cut(s) 140, 155, 176, 199, 286, 313, 349, 364
CviKI_1 RGCY 8 cut(s) 140, 155, 176, 199, 286, 313, 349, 364
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 117, 240
DpnII GATC 2 cut(s) 115, 238
EaeI YGGCCR 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaiI YATR 3 cut(s) 107, 187, 268
FaqI GGGAC 2 cut(s) 19, 86
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 165, 200
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 165, 200
FspBI CTAG 2 cut(s) 27, 273
GluI GCNGC 2 cut(s) 165, 200
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 226, 334
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 236, 242
Hpy8I GTNNAC 2 cut(s) 226, 334
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 28, 213
HpyCH4III ACNGT 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 173
HpyF3I CTNAG 1 cut(s) 141
Kzo9I GATC 2 cut(s) 115, 238
LpnPI CCDG 6 cut(s) 48, 52, 75, 93, 107, 296
Lsp1109I GCAGC 2 cut(s) 151, 186
MabI ACCWGGT 1 cut(s) 61
MaeI CTAG 2 cut(s) 27, 273
MalI GATC 2 cut(s) 117, 240
MboI GATC 2 cut(s) 115, 238
MboII GAAGA 1 cut(s) 36
MflI RGATCY 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 349
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 77, 299
MnlI CCTC 1 cut(s) 60
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 161, 173
NdeII GATC 2 cut(s) 115, 238
NlaIV GGNNCC 2 cut(s) 117, 307
PkrI GCNGC 2 cut(s) 166, 201
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 117, 307
PsuI RGATCY 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 165, 200
Sau3AI GATC 2 cut(s) 115, 238
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 63
SetI ASST 4 cut(s) 64, 201, 278, 315
SexAI ACCWGGT 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 104
SsiI CCGC 1 cut(s) 369
SspMI CTAG 2 cut(s) 27, 273
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 225
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 126
TseI GCWGC 2 cut(s) 164, 199
TspDTI ATGAA 2 cut(s) 84, 344
TspRI CASTG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 27, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.