Prupe.2G290600_v2.0.a1

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016516
Physical Location & Seq
Reverse (-)
28458522 .. 28460205
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G290600.1

Sequence Viewer

Length: 864 bp
ATGGGGACCGGTTTCTCTTTCTTCCTGGGGGAAACCAGTACTGGATTATTAGGTTCTTCTTCTCTTCCAGCAAAACCTGGTCTTGGAGACTTACCAGAGAGTTGTATCTCATCCATCTTTATGTACTTGGATCCGCCGGAGATTTGTAAATTGGCACAGATGAACAGGGCTTTCCGTGCTGCTTCTTTGGCTGATTTTGTTTGGGAGTCAAAGCTGCCATCAAACTTTAAGTTTCTTGTCGACAAAGTTCTTGATCATGAAAATTTGCCCAAGAAAGAGATTTACGCTAGGTTGTGCCAGCCCAATTGTTTCGATGGTGGCACCAAGGAAGTTTGGCTGGACAAGAGTTGTGGGCAAGTTTTCTTGTCCATTTCGTCCAGGGCATTGCGAATAACAGGAATAGATGATCGAAGATATTGGAGTCATATTCCAACTGAGGAATCAAGGTTCCACACAGTTGCATATCTTCAACAGATTTGGTGGGTTGAAGCTCTAGGTGAACTAGAATTTGAGTTTCCCCGGGGGAGCTATAGCCTATACTTCCGGCTTCAGCTAGGCAAAACCTGTCCAAAAAGATTTGGCCGACGAGTATGCAACGCCGATCAAGTCCATGGCTGGCACATCAAGCCTGTCCGCTTCCAGTTATCAACATCAGACGGCCAGCACGCTTTATCAGAATGTTATTTGCATCAACAAGGCAGTTGGGTTCATTACCATGTGGGTGATTTTGTTGTCATCGACAACCACAAGCCTATGAAGATCAAATTTTCAATGGTCCAGATTGATTGTACACACACCAAAGGCGGTCTCAGCTTAGACTCTGTGTTAATATACCCAAGCAAGTTTCGGGAAAAGTTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

288

Amino Acids

32.77

Weight (kDa)

8.32

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52120
fragaria_vesca FvH4_7g29070 FvH4_7g29070
malus_domestica MD01G1197200.v1.1
prunus_persica Prupe.2G290600_v2.0.a1
pyrus_communis pycom01g20760
rosa_chinensis RchiOBHm_Chr1g0376791
rosa_roxburghii Rroxscaffold_4G00281730
rosa_rugosa Rorug01G0398400
rosa_samantha Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana Rw1G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 240
AciI CCGC 3 cut(s) 134, 634, 804
AclWI GGATC 2 cut(s) 125, 138
AcoI YGGCCR 2 cut(s) 580, 658
AcsI RAATTY 3 cut(s) 262, 506, 764
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 3 cut(s) 40, 125, 790
AfiI CCNNNNNNNGG 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 470, 488, 771
AjnI CCWGG 3 cut(s) 24, 76, 377
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 214, 491, 528, 553, 813
AluI AGCT 5 cut(s) 214, 491, 528, 553, 813
Alw26I GTCTC 2 cut(s) 81, 812
AlwI GGATC 2 cut(s) 125, 138
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 2 cut(s) 580, 658
ApeKI GCWGC 2 cut(s) 179, 214
ApoI RAATTY 3 cut(s) 262, 506, 764
AsiGI ACCGGT 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 6, 775
AsuC2I CCSGG 2 cut(s) 520, 521
AsuHPI GGTGA 2 cut(s) 509, 734
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 2 cut(s) 6, 775
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 166, 201
BccI CCATC 3 cut(s) 122, 226, 308
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BciT130I CCWGG 3 cut(s) 26, 78, 379
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 2 cut(s) 520, 521
BcoDI GTCTC 2 cut(s) 81, 812
BfaI CTAG 4 cut(s) 288, 494, 503, 554
BfmI CTRYAG 1 cut(s) 529
BisI GCNGC 2 cut(s) 180, 215
BlsI GCNGC 2 cut(s) 181, 216
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 5 cut(s) 26, 78, 379, 520, 521
Bme18I GGWCC 2 cut(s) 6, 775
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 6, 775
BmiI GGNNCC 4 cut(s) 7, 132, 322, 449
BmrFI CCNGG 5 cut(s) 26, 78, 379, 520, 521
BmsI GCATC 1 cut(s) 697
BpuMI CCSGG 2 cut(s) 520, 521
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 7 cut(s) 25, 324, 378, 518, 519, 520, 610
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 3 cut(s) 36, 46, 640
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 3 cut(s) 26, 78, 379
BseDI CCNNGG 7 cut(s) 25, 324, 378, 518, 519, 520, 610
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 426, 823
BseNI ACTGG 3 cut(s) 36, 46, 640
BseXI GCAGC 2 cut(s) 166, 201
BshFI GGCC 2 cut(s) 582, 660
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 4 cut(s) 9, 137, 520, 544
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 81, 812
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 582, 660
Bso31I GGTCTC 1 cut(s) 812
BsoBI CYCGRG 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 788
Bsp143I GATC 5 cut(s) 130, 253, 406, 601, 759
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 3 cut(s) 134, 634, 804
BspANI GGCC 2 cut(s) 582, 660
BspCNI CTCAG 2 cut(s) 427, 822
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 4 cut(s) 7, 132, 322, 449
BspPI GGATC 2 cut(s) 125, 138
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 788
BsrI ACTGG 3 cut(s) 36, 46, 640
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 7 cut(s) 25, 324, 378, 518, 519, 520, 610
BssMI GATC 5 cut(s) 130, 253, 406, 601, 759
BssT1I CCWWGG 2 cut(s) 324, 610
Bst2UI CCWGG 3 cut(s) 26, 78, 379
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 788
BstC8I GCNNGC 4 cut(s) 299, 617, 662, 666
BstDEI CTNAG 3 cut(s) 435, 809, 814
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 5 cut(s) 133, 256, 409, 604, 762
BstMAI GTCTC 2 cut(s) 81, 812
BstMBI GATC 5 cut(s) 130, 253, 406, 601, 759
BstMWI GCNNNNNNNGC 4 cut(s) 176, 188, 625, 810
BstNI CCWGG 3 cut(s) 26, 78, 379
BstSCI CCNGG 5 cut(s) 24, 76, 377, 518, 519
BstSFI CTRYAG 1 cut(s) 529
BstV1I GCAGC 2 cut(s) 166, 201
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 2 cut(s) 582, 660
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 1 cut(s) 110
Cac8I GCNNGC 4 cut(s) 299, 617, 662, 666
CciI TCATGA 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 6, 775
Cfr9I CCCGGG 1 cut(s) 519
CsiI ACCWGGT 1 cut(s) 76
Csp6I GTAC 3 cut(s) 39, 124, 789
CspAI ACCGGT 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 257, 611, 716
CviQI GTAC 3 cut(s) 39, 124, 789
DdeI CTNAG 3 cut(s) 435, 809, 814
DpnI GATC 5 cut(s) 132, 255, 408, 603, 761
DpnII GATC 5 cut(s) 130, 253, 406, 601, 759
EaeI YGGCCR 2 cut(s) 580, 658
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 324, 610
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 6, 775
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 3 cut(s) 24, 76, 377
EcoT14I CCWWGG 2 cut(s) 324, 610
ErhI CCWWGG 2 cut(s) 324, 610
FaeI CATG 3 cut(s) 260, 614, 719
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 256, 610, 715
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 180, 215
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 180, 215
FspBI CTAG 4 cut(s) 288, 494, 503, 554
GluI GCNGC 2 cut(s) 180, 215
HaeIII GGCC 2 cut(s) 582, 660
HapII CCGG 4 cut(s) 9, 137, 520, 544
Hin1II CATG 3 cut(s) 260, 614, 719
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 206, 421, 440, 818
HpaII CCGG 4 cut(s) 9, 137, 520, 544
HphI GGTGA 2 cut(s) 509, 734
Hpy166II GTNNAC 3 cut(s) 241, 500, 791
Hpy188I TCNGA 2 cut(s) 655, 676
Hpy188III TCNNGA 4 cut(s) 251, 257, 778, 848
Hpy8I GTNNAC 3 cut(s) 241, 500, 791
Hpy99I CGWCG 1 cut(s) 588
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 461, 594, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 188, 625, 810
HpyF3I CTNAG 3 cut(s) 435, 809, 814
Hsp92II CATG 3 cut(s) 260, 614, 719
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 130, 253, 406, 601, 759
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 2 cut(s) 166, 201
LweI GCATC 1 cut(s) 697
MabI ACCWGGT 1 cut(s) 76
MaeI CTAG 4 cut(s) 288, 494, 503, 554
MalI GATC 5 cut(s) 132, 255, 408, 603, 761
MboI GATC 5 cut(s) 130, 253, 406, 601, 759
MboII GAAGA 7 cut(s) 13, 48, 51, 56, 423, 458, 769
MfeI CAATTG 1 cut(s) 304
MflI RGATCY 1 cut(s) 130
MluCI AATT 5 cut(s) 149, 262, 304, 506, 764
MlyI GAGTC 3 cut(s) 215, 430, 812
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 1 cut(s) 430
MseI TTAA 3 cut(s) 228, 827, 857
MslI CAYNNNNRTG 3 cut(s) 119, 714, 720
MspI CCGG 4 cut(s) 9, 137, 520, 544
MspR9I CCNGG 5 cut(s) 26, 78, 379, 520, 521
MunI CAATTG 1 cut(s) 304
MvaI CCWGG 3 cut(s) 26, 78, 379
MwoI GCNNNNNNNGC 4 cut(s) 176, 188, 625, 810
NciI CCSGG 2 cut(s) 520, 521
NcoI CCATGG 1 cut(s) 610
NdeII GATC 5 cut(s) 130, 253, 406, 601, 759
NlaIII CATG 3 cut(s) 260, 614, 719
NlaIV GGNNCC 4 cut(s) 7, 132, 322, 449
PagI TCATGA 1 cut(s) 256
PfeI GAWTC 1 cut(s) 440
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 181, 216
PleI GAGTC 3 cut(s) 214, 429, 812
PpsI GAGTC 3 cut(s) 214, 429, 812
Psp6I CCWGG 3 cut(s) 24, 76, 377
PspGI CCWGG 3 cut(s) 24, 76, 377
PspN4I GGNNCC 4 cut(s) 7, 132, 322, 449
PspPI GGNCC 2 cut(s) 6, 775
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 3 cut(s) 40, 125, 790
RsaNI GTAC 3 cut(s) 39, 124, 789
RseI CAYNNNNRTG 3 cut(s) 119, 714, 720
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 228, 827, 857
SatI GCNGC 2 cut(s) 180, 215
Sau3AI GATC 5 cut(s) 130, 253, 406, 601, 759
Sau96I GGNCC 2 cut(s) 6, 775
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 3 cut(s) 215, 430, 812
ScrFI CCNGG 5 cut(s) 26, 78, 379, 520, 521
SexAI ACCWGGT 1 cut(s) 76
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 1 cut(s) 529
SinI GGWCC 2 cut(s) 6, 775
SmaI CCCGGG 1 cut(s) 521
SmiMI CAYNNNNRTG 3 cut(s) 119, 714, 720
Sse9I AATT 5 cut(s) 149, 262, 304, 506, 764
SsiI CCGC 3 cut(s) 134, 634, 804
SspMI CTAG 4 cut(s) 288, 494, 503, 554
StyD4I CCNGG 5 cut(s) 24, 76, 377, 518, 519
StyI CCWWGG 2 cut(s) 324, 610
TaaI ACNGT 1 cut(s) 457
TaqI TCGA 4 cut(s) 240, 312, 409, 738
TasI AATT 5 cut(s) 149, 262, 304, 506, 764
TatI WGTACW 3 cut(s) 38, 123, 788
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 228, 827, 857
Tru9I TTAA 3 cut(s) 228, 827, 857
TseI GCWGC 2 cut(s) 179, 214
TspDTI ATGAA 4 cut(s) 176, 273, 698, 770
TspGWI ACGGA 1 cut(s) 164
TspMI CCCGGG 1 cut(s) 519
VpaK11BI GGWCC 2 cut(s) 6, 775
XapI RAATTY 3 cut(s) 262, 506, 764
XmaI CCCGGG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 4 cut(s) 288, 494, 503, 554
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.