Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016516

Physical Location & Seq

Genomic Coordinates Reverse (-)

64787140 .. 64787508

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG415600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGGCTGGTTCCTCTATGTCTTCAAAGGATACCAGTAGATCAGGTTCTCCCGATCATCCTCCGGATCAAACTAAGCCGGGTCTCAGAGACCTTCCTGAAAGTTGTATCTCTTACATTCTTTTGTATTTGGATCCGCCGGAGATCTGTAAACTTGCGCAGGTGAATAGGGTTTTCCGGGCTGCTTCATCTACTGATTTTGTCTGGCAATCAAAGCTCCCATCAAACTATAAGTTTCTAGTCGAAAAATCATTAATCCTCGGCGAACATAATAGTAACCGTATTCCGAAGAAAGATATATACGCAAGATTGTGTCTGCCAAATCGTTTTGACAATGGCACCAAGGTACAGTATTTATATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

9.03

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	30 - 71	1.2e-08	F-box-like
F-box	PF00646	30 - 69	2.5e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52120
fragaria_vesca	FvH4_7g29070 FvH4_7g29070
malus_domestica	MD01G1197200.v1.1
prunus_persica	Prupe.2G290600_v2.0.a1
pyrus_communis	pycom01g20760
rosa_chinensis	RchiOBHm_Chr1g0376791
rosa_roxburghii	Rroxscaffold_4G00281730
rosa_rugosa	Rorug01G0398400
rosa_samantha	Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana	Rw1G036460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc16I	TGCGCA	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	3 cut(s)	75, 128, 141
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	84, 89
AlwI	GGATC	3 cut(s)	75, 128, 141
Aor13HI	TCCGGA	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	182
AseI	ATTAAT	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	81, 179
AsuHPI	GGTGA	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	81, 179
BcoDI	GTCTC	2 cut(s)	84, 89
BfaI	CTAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	81, 179
BmiI	GGNNCC	3 cut(s)	13, 135, 340
BmrFI	CCNGG	2 cut(s)	81, 179
BpiI	GAAGAC	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	81, 179
BsaI	GGTCTC	2 cut(s)	84, 89
BsaJI	CCNNGG	2 cut(s)	259, 342
BsaWI	WCCGGW	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	259, 342
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	65, 80, 140, 178
BsmAI	GTCTC	2 cut(s)	84, 89
Bso31I	GGTCTC	2 cut(s)	84, 89
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	41, 55, 67, 133, 144
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	13, 135, 340
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	3 cut(s)	75, 128, 141
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	2 cut(s)	84, 89
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	259, 342
BssMI	GATC	5 cut(s)	41, 55, 67, 133, 144
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	281, 351
BstDEI	CTNAG	3 cut(s)	75, 86, 366
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	5 cut(s)	44, 58, 70, 136, 147
BstMAI	GTCTC	2 cut(s)	84, 89
BstMBI	GATC	5 cut(s)	41, 55, 67, 133, 144
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	79, 177
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	133, 144
BstYI	RGATCY	2 cut(s)	133, 144
BsuI	GTATCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	347
CviJI	RGCY	4 cut(s)	8, 79, 182, 217
CviKI_1	RGCY	4 cut(s)	8, 79, 182, 217
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	75, 86, 366
DpnI	GATC	5 cut(s)	43, 57, 69, 135, 146
DpnII	GATC	5 cut(s)	41, 55, 67, 133, 144
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	2 cut(s)	84, 89
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	7 cut(s)	20, 231, 270, 299, 301, 358, 360
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	239
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	4 cut(s)	65, 80, 140, 178
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	65, 80, 140, 178
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	89, 288
Hpy188III	TCNNGA	3 cut(s)	53, 65, 98
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	281, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	75, 86, 366
HspAI	GCGC	1 cut(s)	158
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	41, 55, 67, 133, 144
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	30, 49, 78, 93, 111, 146, 153, 190, 191
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	43, 57, 69, 135, 146
MboI	GATC	5 cut(s)	41, 55, 67, 133, 144
MboII	GAAGA	2 cut(s)	15, 301
MflI	RGATCY	2 cut(s)	133, 144
MnlI	CCTC	3 cut(s)	25, 72, 269
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	1 cut(s)	254
MspI	CCGG	4 cut(s)	65, 80, 140, 178
MspR9I	CCNGG	2 cut(s)	81, 179
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	2 cut(s)	81, 179
NdeII	GATC	5 cut(s)	41, 55, 67, 133, 144
NlaIV	GGNNCC	3 cut(s)	13, 135, 340
NmeAIII	GCCGAG	1 cut(s)	240
NsbI	TGCGCA	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	13, 135, 340
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PsuI	RGATCY	2 cut(s)	133, 144
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	5 cut(s)	41, 55, 67, 133, 144
ScrFI	CCNGG	2 cut(s)	81, 179
SetI	ASST	5 cut(s)	49, 96, 165, 219, 348
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	79, 177
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	281, 351
TaqI	TCGA	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	254
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.