Rh1CG388900

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016516
Physical Location & Seq
Reverse (-)
65825212 .. 65827319
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG388900.1

Sequence Viewer

Length: 381 bp
ATGGGGGCTGGTTCCTCTATGTCTTCAAAGGATACCAGTAGATCAGGTTCTCCCGATCATCCTCCTGATCAAACTAAGCCGGGTCTCGGAGACCTACCTGAAAGTTGTATCTCTTACATTCTTTTGTATTTGGATCCGCCGGAGATCTGTAAACTTGCGCAGGTGAATAGGGTTTTCCGGGCTGCTTCATCTACTGATTTTGTCTGGCAATCAAAGCTCCCATCAAACTATAAGTTTCTAGTCGAAAAATCATTAATCCTCGGCGAACATAATAGTAACCGTATTCTGAAGAAAGATATATACGCAAGATTGTGTCTGCCAAATCGTTTTGACAATGGCACCAAGGTTCAGGTCCCTGTTCTTGATGCAGTCTTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

126

Amino Acids

13.94

Weight (kDa)

8.46

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 71 1e-08 F-box-like
F-box PF00646 31 - 69 2.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52120
fragaria_vesca FvH4_7g29070 FvH4_7g29070
malus_domestica MD01G1197200.v1.1
prunus_persica Prupe.2G290600_v2.0.a1
pyrus_communis pycom01g20760
rosa_chinensis RchiOBHm_Chr1g0376791
rosa_roxburghii Rroxscaffold_4G00281730
rosa_rugosa Rorug01G0398400
rosa_samantha Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana Rw1G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc16I TGCGCA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 128, 141
AcuI CTGAAG 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 84, 89
AlwI GGATC 2 cut(s) 128, 141
ApeKI GCWGC 1 cut(s) 182
AseI ATTAAT 1 cut(s) 254
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 2 cut(s) 81, 179
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 229
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 2 cut(s) 81, 179
BcoDI GTCTC 2 cut(s) 84, 89
BfaI CTAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 144
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 81, 179
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 4 cut(s) 13, 135, 340, 354
BmrFI CCNGG 2 cut(s) 81, 179
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 81, 179
BsaI GGTCTC 2 cut(s) 84, 89
BsaJI CCNNGG 2 cut(s) 259, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 259, 342
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 3 cut(s) 80, 140, 178
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 84, 89
BsmFI GGGAC 1 cut(s) 338
Bso31I GGTCTC 2 cut(s) 84, 89
Bsp143I GATC 5 cut(s) 41, 55, 67, 133, 144
BspACI CCGC 1 cut(s) 137
BspLI GGNNCC 4 cut(s) 13, 135, 340, 354
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 128, 141
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 2 cut(s) 84, 89
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 259, 342
BssMI GATC 5 cut(s) 41, 55, 67, 133, 144
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 5 cut(s) 44, 58, 70, 136, 147
BstMAI GTCTC 2 cut(s) 84, 89
BstMBI GATC 5 cut(s) 41, 55, 67, 133, 144
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 79, 177
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 133, 144
BstYI RGATCY 2 cut(s) 133, 144
BsuI GTATCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 352
CviJI RGCY 4 cut(s) 8, 79, 182, 217
CviKI_1 RGCY 4 cut(s) 8, 79, 182, 217
DdeI CTNAG 1 cut(s) 75
DpnI GATC 5 cut(s) 43, 57, 69, 135, 146
DpnII GATC 5 cut(s) 41, 55, 67, 133, 144
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 84, 89
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaiI YATR 5 cut(s) 20, 231, 270, 299, 301
FaqI GGGAC 1 cut(s) 338
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 239
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 183
HapII CCGG 3 cut(s) 80, 140, 178
HhaI GCGC 1 cut(s) 160
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HpaII CCGG 3 cut(s) 80, 140, 178
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 89, 288
Hpy188III TCNNGA 3 cut(s) 53, 65, 362
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 75
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 5 cut(s) 41, 55, 67, 133, 144
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 275
MalI GATC 5 cut(s) 43, 57, 69, 135, 146
MboI GATC 5 cut(s) 41, 55, 67, 133, 144
MboII GAAGA 2 cut(s) 15, 301
MflI RGATCY 2 cut(s) 133, 144
MnlI CCTC 3 cut(s) 25, 72, 269
MseI TTAA 1 cut(s) 254
MspI CCGG 3 cut(s) 80, 140, 178
MspR9I CCNGG 2 cut(s) 81, 179
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 81, 179
NdeII GATC 5 cut(s) 41, 55, 67, 133, 144
NlaIV GGNNCC 4 cut(s) 13, 135, 340, 354
NmeAIII GCCGAG 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 13, 135, 340, 354
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 2 cut(s) 133, 144
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 5 cut(s) 41, 55, 67, 133, 144
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 81, 179
SetI ASST 7 cut(s) 49, 96, 100, 165, 219, 348, 354
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 352
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 79, 177
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 243
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 352
VspI ATTAAT 1 cut(s) 254
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.