Rh1BG375100

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016516
Physical Location & Seq
Reverse (-)
50581765 .. 50583607
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG375100.1

Sequence Viewer

Length: 552 bp
ATGGGGGCTGGTTCCTCTATGTCTTCAAAGGATACCAGTAGATCAGGTTCTCCCGATCATCCTCCTGATCAAACTAAGCCGGGTCTCGGAGACCTACCTGAAAGTTGTATCTCTTACATTCTTTTGTATTTGGATCCGCCGGAGATCTGTAAACTTGCGCAGGTGAATAGGGTTTTCCGGGCTGCTTCATCTACTGATTTTGTCTGGCAATCAAAGCTCCCATCAAACTATAAGTTTCTAGTCGAAAAATCATTAATCCTCGGCGAACATAATAGTAACCGTATTCTGAAGAAAGATATATACGCAAGATTGTGTCTGCCAAATCGTTTTGACAATGGCACCAAGGTACACTTGGCAGGACTTGTTCAGGAAGATTCGGCCGACGAGTATGCAACACTGATCAAGTGCATGGCTGGGACATTAAGCCCGTCCGATTCCACTTATCAACGTCGGACGGCCAACACGCTTTATCCGAGTGTTATTTGCATGAACGATGCAGCTGGGTTCACTACCATGTTGGTGATTTCGTCAGCAACAGTCCTAAGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

7.62

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 71 2.1e-08 F-box-like
F-box PF00646 31 - 69 5.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016516)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52120
fragaria_vesca FvH4_7g29070 FvH4_7g29070
malus_domestica MD01G1197200.v1.1
prunus_persica Prupe.2G290600_v2.0.a1
pyrus_communis pycom01g20760
rosa_chinensis RchiOBHm_Chr1g0376791
rosa_roxburghii Rroxscaffold_4G00281730
rosa_rugosa Rorug01G0398400
rosa_samantha Rh1AG415600 Rh1BG375100 Rh1CG388900 Rh1DG405700
rosa_wichuraiana Rw1G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc16I TGCGCA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 128, 141
AcoI YGGCCR 2 cut(s) 378, 456
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 2 cut(s) 217, 500
AluI AGCT 2 cut(s) 217, 500
Alw26I GTCTC 2 cut(s) 84, 89
AlwI GGATC 2 cut(s) 128, 141
AoxI GGCC 2 cut(s) 378, 456
ApeKI GCWGC 2 cut(s) 182, 497
AseI ATTAAT 1 cut(s) 254
AspLEI GCGC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 81, 179
AsuHPI GGTGA 2 cut(s) 175, 532
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 169, 509
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 2 cut(s) 67, 399
BcnI CCSGG 2 cut(s) 81, 179
BcoDI GTCTC 2 cut(s) 84, 89
BfaI CTAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 183, 498
BlsI GCNGC 2 cut(s) 184, 499
Bme1390I CCNGG 2 cut(s) 81, 179
BmiI GGNNCC 3 cut(s) 13, 135, 340
BmrFI CCNGG 2 cut(s) 81, 179
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 542
BpuMI CCSGG 2 cut(s) 81, 179
BsaI GGTCTC 2 cut(s) 84, 89
BsaJI CCNNGG 2 cut(s) 259, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 259, 342
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 36
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 169, 509
BseYI CCCAGC 2 cut(s) 413, 500
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 380, 458
BshNI GGYRCC 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 381
BsiSI CCGG 3 cut(s) 80, 140, 178
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 84, 89
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 2 cut(s) 380, 458
Bso31I GGTCTC 2 cut(s) 84, 89
Bsp143I GATC 6 cut(s) 41, 55, 67, 133, 144, 399
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 380, 458
BspLI GGNNCC 3 cut(s) 13, 135, 340
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 128, 141
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 2 cut(s) 84, 89
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 259, 342
BssMI GATC 6 cut(s) 41, 55, 67, 133, 144, 399
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 281, 538
BstDEI CTNAG 2 cut(s) 75, 542
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 6 cut(s) 44, 58, 70, 136, 147, 402
BstMAI GTCTC 2 cut(s) 84, 89
BstMBI GATC 6 cut(s) 41, 55, 67, 133, 144, 399
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 79, 177
BstV1I GCAGC 2 cut(s) 169, 509
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 133, 144
BstYI RGATCY 2 cut(s) 133, 144
BstZI CGGCCG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 380, 458
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 395
BveI ACCTGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 347
CviAII CATG 3 cut(s) 409, 487, 514
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 75, 542
DpnI GATC 6 cut(s) 43, 57, 69, 135, 146, 401
DpnII GATC 6 cut(s) 41, 55, 67, 133, 144, 399
EaeI YGGCCR 2 cut(s) 378, 456
EagI CGGCCG 1 cut(s) 378
EciI GGCGGA 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 84, 89
Eco52I CGGCCG 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 412, 490, 517
FaiI YATR 9 cut(s) 20, 231, 270, 299, 301, 390, 410, 488, 515
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 430
FatI CATG 3 cut(s) 408, 486, 513
FbaI TGATCA 2 cut(s) 67, 399
Fnu4HI GCNGC 2 cut(s) 183, 498
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 183, 498
FspBI CTAG 1 cut(s) 239
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 183, 498
GsaI CCCAGC 2 cut(s) 417, 504
HaeIII GGCC 2 cut(s) 380, 458
HapII CCGG 3 cut(s) 80, 140, 178
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 412, 490, 517
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 374, 434
HpaII CCGG 3 cut(s) 80, 140, 178
HphI GGTGA 2 cut(s) 175, 532
Hpy166II GTNNAC 3 cut(s) 152, 349, 507
Hpy188I TCNGA 5 cut(s) 89, 288, 433, 453, 474
Hpy188III TCNNGA 3 cut(s) 53, 65, 368
Hpy8I GTNNAC 3 cut(s) 152, 349, 507
Hpy99I CGWCG 2 cut(s) 386, 453
HpyCH4III ACNGT 2 cut(s) 281, 538
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 4 cut(s) 392, 408, 486, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 75, 542
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 3 cut(s) 412, 490, 517
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 2 cut(s) 67, 399
Kzo9I GATC 6 cut(s) 41, 55, 67, 133, 144, 399
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 2 cut(s) 169, 509
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 275
MalI GATC 6 cut(s) 43, 57, 69, 135, 146, 401
MboI GATC 6 cut(s) 41, 55, 67, 133, 144, 399
MboII GAAGA 3 cut(s) 15, 301, 383
MflI RGATCY 2 cut(s) 133, 144
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 3 cut(s) 25, 72, 269
MseI TTAA 2 cut(s) 254, 422
MslI CAYNNNNRTG 2 cut(s) 512, 518
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 80, 140, 178
MspR9I CCNGG 2 cut(s) 81, 179
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 81, 179
NdeII GATC 6 cut(s) 41, 55, 67, 133, 144, 399
NlaIII CATG 3 cut(s) 412, 490, 517
NlaIV GGNNCC 3 cut(s) 13, 135, 340
NmeAIII GCCGAG 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PfeI GAWTC 2 cut(s) 374, 434
PkrI GCNGC 2 cut(s) 184, 499
PshBI ATTAAT 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 413, 500
PspN4I GGNNCC 3 cut(s) 13, 135, 340
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 2 cut(s) 133, 144
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 512, 518
SaqAI TTAA 2 cut(s) 254, 422
SatI GCNGC 2 cut(s) 183, 498
Sau3AI GATC 6 cut(s) 41, 55, 67, 133, 144, 399
ScrFI CCNGG 2 cut(s) 81, 179
SetI ASST 8 cut(s) 49, 96, 100, 165, 219, 348, 451, 502
SfaNI GCATC 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 512, 518
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 79, 177
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 281, 538
TaiI ACGT 1 cut(s) 451
TaqI TCGA 1 cut(s) 243
TfiI GAWTC 2 cut(s) 374, 434
Tru1I TTAA 2 cut(s) 254, 422
Tru9I TTAA 2 cut(s) 254, 422
TscAI CASTG 1 cut(s) 402
TseI GCWGC 2 cut(s) 182, 497
TspDTI ATGAA 2 cut(s) 177, 503
TspRI CASTG 1 cut(s) 402
VspI ATTAAT 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.