methyl-CpG-binding domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52230 AT5G52230 AT5G52230 |
| fragaria_vesca | FvH4_7g29290 FvH4_7g29290 |
| malus_domestica | MD01G1199300.v1.1 MD07G1267200.v1.1 |
| prunus_persica | Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 |
| pyrus_communis | pycom01g20920 pycom07g24480 |
| rosa_chinensis | RchiOBHm_Chr1g0377031 |
| rosa_laevigata | RLG00000026548 |
| rosa_multiflora | Rmu_ssc0000155.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00281510 |
| rosa_rugosa | Rorug01G0401000 Rorug01G0401100 |
| rosa_samantha | Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000 |
| rosa_wichuraiana | Rw1G036700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2123 |
| AccBSI | CCGCTC | 1 cut(s) | 1267 |
| AccI | GTMKAC | 1 cut(s) | 2123 |
| AccIII | TCCGGA | 1 cut(s) | 311 |
| AciI | CCGC | 4 cut(s) | 884, 944, 1242, 1265 |
| AclWI | GGATC | 7 cut(s) | 23, 137, 173, 524, 752, 1252, 1817 |
| AcsI | RAATTY | 2 cut(s) | 987, 1148 |
| AcuI | CTGAAG | 6 cut(s) | 141, 872, 932, 992, 1052, 1112 |
| AcyI | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| AfaI | GTAC | 7 cut(s) | 589, 882, 942, 1002, 1122, 1170, 1771 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 675, 1193, 1649, 1692, 2006 |
| AjnI | CCWGG | 1 cut(s) | 1954 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 312, 344 |
| AluBI | AGCT | 9 cut(s) | 547, 701, 781, 821, 832, 1290, 1709, 1779, 2147 |
| AluI | AGCT | 9 cut(s) | 547, 701, 781, 821, 832, 1290, 1709, 1779, 2147 |
| Alw26I | GTCTC | 3 cut(s) | 242, 1939, 1943 |
| AlwI | GGATC | 7 cut(s) | 23, 137, 173, 524, 752, 1252, 1817 |
| Ama87I | CYCGRG | 1 cut(s) | 2005 |
| Aor13HI | TCCGGA | 1 cut(s) | 311 |
| AoxI | GGCC | 1 cut(s) | 160 |
| ApeKI | GCWGC | 7 cut(s) | 104, 544, 1322, 1325, 1328, 1556, 2132 |
| ApoI | RAATTY | 2 cut(s) | 987, 1148 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2090, 2122 |
| AspLEI | GCGC | 1 cut(s) | 2066 |
| AsuC2I | CCSGG | 2 cut(s) | 2006, 2007 |
| AsuHPI | GGTGA | 5 cut(s) | 535, 1425, 1494, 1503, 1632 |
| AvaI | CYCGRG | 1 cut(s) | 2005 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2017, 2050 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 448, 480 |
| BbsI | GAAGAC | 8 cut(s) | 621, 860, 920, 980, 1040, 1427, 1556, 1865 |
| BbvI | GCAGC | 7 cut(s) | 91, 556, 1309, 1312, 1315, 1568, 2144 |
| BccI | CCATC | 4 cut(s) | 17, 120, 1187, 1753 |
| BceAI | ACGGC | 1 cut(s) | 147 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1779, 1813 |
| BciT130I | CCWGG | 1 cut(s) | 1956 |
| BcnI | CCSGG | 2 cut(s) | 2006, 2007 |
| BcoDI | GTCTC | 3 cut(s) | 242, 1939, 1943 |
| BfaI | CTAG | 3 cut(s) | 567, 1581, 1706 |
| BfmI | CTRYAG | 3 cut(s) | 360, 2127, 2190 |
| BglII | AGATCT | 3 cut(s) | 356, 1623, 1810 |
| BisI | GCNGC | 7 cut(s) | 105, 545, 1323, 1326, 1329, 1557, 2133 |
| BlsI | GCNGC | 7 cut(s) | 106, 546, 1324, 1327, 1330, 1558, 2134 |
| Bme1390I | CCNGG | 3 cut(s) | 1956, 2006, 2007 |
| BmeT110I | CYCGRG | 1 cut(s) | 2005 |
| BmrFI | CCNGG | 3 cut(s) | 1956, 2006, 2007 |
| BmsI | GCATC | 1 cut(s) | 242 |
| BpiI | GAAGAC | 8 cut(s) | 621, 860, 920, 980, 1040, 1427, 1556, 1865 |
| BpmI | CTGGAG | 4 cut(s) | 359, 652, 1869, 1938 |
| BpuEI | CTTGAG | 3 cut(s) | 93, 493, 518 |
| BpuMI | CCSGG | 2 cut(s) | 2006, 2007 |
| BsaAI | YACGTR | 1 cut(s) | 275 |
| BsaHI | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| BsaJI | CCNNGG | 2 cut(s) | 2004, 2005 |
| BsaWI | WCCGGW | 2 cut(s) | 311, 1856 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1766, 1796 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 675, 1193, 1649, 1692, 2006 |
| Bse1I | ACTGG | 6 cut(s) | 256, 585, 669, 1460, 1605, 1989 |
| Bse3DI | GCAATG | 1 cut(s) | 1830 |
| BseAI | TCCGGA | 1 cut(s) | 311 |
| BseBI | CCWGG | 1 cut(s) | 1956 |
| BseDI | CCNNGG | 2 cut(s) | 2004, 2005 |
| BseGI | GGATG | 4 cut(s) | 131, 1663, 1727, 2121 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 675, 1193, 1649, 1692, 2006 |
| BseMI | GCAATG | 1 cut(s) | 1830 |
| BseMII | CTCAG | 7 cut(s) | 27, 585, 726, 1322, 1625, 1634, 1764 |
| BseNI | ACTGG | 6 cut(s) | 256, 585, 669, 1460, 1605, 1989 |
| BseRI | GAGGAG | 1 cut(s) | 1774 |
| BseXI | GCAGC | 7 cut(s) | 91, 556, 1309, 1312, 1315, 1568, 2144 |
| BsgI | GTGCAG | 1 cut(s) | 1374 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2076 |
| BshFI | GGCC | 1 cut(s) | 162 |
| BsiEI | CGRYCG | 1 cut(s) | 2076 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2005 |
| BsiSI | CCGG | 4 cut(s) | 312, 1203, 1857, 2006 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 675, 1193, 1649, 1692, 2006 |
| BsmAI | GTCTC | 3 cut(s) | 242, 1939, 1943 |
| BsnI | GGCC | 1 cut(s) | 162 |
| BsoBI | CYCGRG | 1 cut(s) | 2005 |
| Bsp13I | TCCGGA | 1 cut(s) | 311 |
| BspACI | CCGC | 4 cut(s) | 884, 944, 1242, 1265 |
| BspANI | GGCC | 1 cut(s) | 162 |
| BspCNI | CTCAG | 7 cut(s) | 28, 586, 727, 1321, 1626, 1633, 1763 |
| BspEI | TCCGGA | 1 cut(s) | 311 |
| BspMAI | CTGCAG | 1 cut(s) | 364 |
| BspPI | GGATC | 7 cut(s) | 23, 137, 173, 524, 752, 1252, 1817 |
| BsrBI | CCGCTC | 1 cut(s) | 1267 |
| BsrDI | GCAATG | 1 cut(s) | 1830 |
| BsrI | ACTGG | 6 cut(s) | 256, 585, 669, 1460, 1605, 1989 |
| BssECI | CCNNGG | 2 cut(s) | 2004, 2005 |
| BssNI | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| Bst2UI | CCWGG | 1 cut(s) | 1956 |
| Bst4CI | ACNGT | 8 cut(s) | 240, 328, 816, 1478, 1515, 1676, 2168, 2191 |
| Bst6I | CTCTTC | 6 cut(s) | 169, 513, 711, 759, 1760, 1900 |
| BstACI | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| BstBAI | YACGTR | 1 cut(s) | 275 |
| BstC8I | GCNNGC | 2 cut(s) | 1214, 1561 |
| BstF5I | GGATG | 4 cut(s) | 131, 1663, 1727, 2121 |
| BstHHI | GCGC | 1 cut(s) | 2066 |
| BstMAI | GTCTC | 3 cut(s) | 242, 1939, 1943 |
| BstMCI | CGRYCG | 1 cut(s) | 2076 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1328, 1361 |
| BstNI | CCWGG | 1 cut(s) | 1956 |
| BstNSI | RCATGY | 3 cut(s) | 1322, 1749, 1974 |
| BstSCI | CCNGG | 3 cut(s) | 1954, 2004, 2005 |
| BstSFI | CTRYAG | 3 cut(s) | 360, 2127, 2190 |
| BstV1I | GCAGC | 7 cut(s) | 91, 556, 1309, 1312, 1315, 1568, 2144 |
| BstV2I | GAAGAC | 8 cut(s) | 621, 860, 920, 980, 1040, 1427, 1556, 1865 |
| BstX2I | RGATCY | 7 cut(s) | 15, 178, 356, 529, 1623, 1810, 1822 |
| BstYI | RGATCY | 7 cut(s) | 15, 178, 356, 529, 1623, 1810, 1822 |
| BsuRI | GGCC | 1 cut(s) | 162 |
| BtsCI | GGATG | 4 cut(s) | 131, 1663, 1727, 2121 |
| BtsI | GCAGTG | 1 cut(s) | 1371 |
| BtsIMutI | CAGTG | 5 cut(s) | 676, 1371, 1436, 1612, 1681 |
| Cac8I | GCNNGC | 2 cut(s) | 1214, 1561 |
| CfoI | GCGC | 1 cut(s) | 2066 |
| Cfr9I | CCCGGG | 1 cut(s) | 2005 |
| CseI | GACGC | 7 cut(s) | 239, 910, 970, 1030, 1090, 1150, 1432 |
| Csp6I | GTAC | 7 cut(s) | 588, 881, 941, 1001, 1121, 1169, 1770 |
| CviAII | CATG | 4 cut(s) | 1229, 1319, 1746, 1971 |
| CviQI | GTAC | 7 cut(s) | 588, 881, 941, 1001, 1121, 1169, 1770 |
| DraI | TTTAAA | 1 cut(s) | 615 |
| Eam1104I | CTCTTC | 6 cut(s) | 169, 513, 711, 759, 1760, 1900 |
| EarI | CTCTTC | 6 cut(s) | 169, 513, 711, 759, 1760, 1900 |
| Eco32I | GATATC | 1 cut(s) | 295 |
| Eco57I | CTGAAG | 6 cut(s) | 141, 872, 932, 992, 1052, 1112 |
| Eco88I | CYCGRG | 1 cut(s) | 2005 |
| EcoRII | CCWGG | 1 cut(s) | 1954 |
| EcoRV | GATATC | 1 cut(s) | 295 |
| FaeI | CATG | 4 cut(s) | 1232, 1322, 1749, 1974 |
| FatI | CATG | 4 cut(s) | 1228, 1318, 1745, 1970 |
| FblI | GTMKAC | 1 cut(s) | 2123 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 545, 1323, 1326, 1329, 1557, 2133 |
| FokI | GGATG | 4 cut(s) | 138, 1650, 1714, 2128 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 545, 1323, 1326, 1329, 1557, 2133 |
| FspBI | CTAG | 3 cut(s) | 567, 1581, 1706 |
| GlaI | GCGC | 1 cut(s) | 2065 |
| GluI | GCNGC | 7 cut(s) | 105, 545, 1323, 1326, 1329, 1557, 2133 |
| GsuI | CTGGAG | 4 cut(s) | 359, 652, 1869, 1938 |
| HaeIII | GGCC | 1 cut(s) | 162 |
| HapII | CCGG | 4 cut(s) | 312, 1203, 1857, 2006 |
| HgaI | GACGC | 7 cut(s) | 239, 910, 970, 1030, 1090, 1150, 1432 |
| HhaI | GCGC | 1 cut(s) | 2066 |
| Hin1I | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| Hin1II | CATG | 4 cut(s) | 1232, 1322, 1749, 1974 |
| Hin6I | GCGC | 1 cut(s) | 2064 |
| HinP1I | GCGC | 1 cut(s) | 2064 |
| HincII | GTYRAC | 1 cut(s) | 1966 |
| HindII | GTYRAC | 1 cut(s) | 1966 |
| HpaI | GTTAAC | 1 cut(s) | 1966 |
| HpaII | CCGG | 4 cut(s) | 312, 1203, 1857, 2006 |
| HphI | GGTGA | 5 cut(s) | 535, 1425, 1494, 1503, 1632 |
| Hpy166II | GTNNAC | 9 cut(s) | 116, 349, 413, 664, 1966, 2000, 2124, 2198, 2217 |
| Hpy8I | GTNNAC | 9 cut(s) | 116, 349, 413, 664, 1966, 2000, 2124, 2198, 2217 |
| Hpy99I | CGWCG | 5 cut(s) | 608, 804, 904, 964, 1024 |
| HpyCH4III | ACNGT | 8 cut(s) | 240, 328, 816, 1478, 1515, 1676, 2168, 2191 |
| HpyCH4IV | ACGT | 2 cut(s) | 274, 2120 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1328, 1361 |
| HpySE526I | ACGT | 2 cut(s) | 274, 2120 |
| Hsp92I | GRCGYC | 5 cut(s) | 902, 962, 1082, 1142, 2120 |
| Hsp92II | CATG | 4 cut(s) | 1232, 1322, 1749, 1974 |
| HspAI | GCGC | 1 cut(s) | 2064 |
| Kpn2I | TCCGGA | 1 cut(s) | 311 |
| KspAI | GTTAAC | 1 cut(s) | 1966 |
| Lsp1109I | GCAGC | 7 cut(s) | 91, 556, 1309, 1312, 1315, 1568, 2144 |
| LweI | GCATC | 1 cut(s) | 242 |
| MaeI | CTAG | 3 cut(s) | 567, 1581, 1706 |
| MaeII | ACGT | 2 cut(s) | 274, 2120 |
| MaeIII | GTNAC | 8 cut(s) | 481, 562, 678, 1231, 1478, 1500, 1509, 2106 |
| MbiI | CCGCTC | 1 cut(s) | 1267 |
| MflI | RGATCY | 7 cut(s) | 15, 178, 356, 529, 1623, 1810, 1822 |
| MluCI | AATT | 5 cut(s) | 51, 278, 451, 987, 1148 |
| MlyI | GAGTC | 5 cut(s) | 1790, 1795, 1941, 1945, 2005 |
| MroI | TCCGGA | 1 cut(s) | 311 |
| MseI | TTAA | 4 cut(s) | 614, 1152, 1908, 1965 |
| MspA1I | CMGCKG | 1 cut(s) | 1242 |
| MspI | CCGG | 4 cut(s) | 312, 1203, 1857, 2006 |
| MspR9I | CCNGG | 3 cut(s) | 1956, 2006, 2007 |
| MvaI | CCWGG | 1 cut(s) | 1956 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1328, 1361 |
| NciI | CCSGG | 2 cut(s) | 2006, 2007 |
| NlaIII | CATG | 4 cut(s) | 1232, 1322, 1749, 1974 |
| NmuCI | GTSAC | 4 cut(s) | 678, 1500, 1509, 2106 |
| NspI | RCATGY | 3 cut(s) | 1322, 1749, 1974 |
| PfeI | GAWTC | 7 cut(s) | 308, 656, 728, 1225, 1358, 1456, 1862 |
| PfoI | TCCNGGA | 1 cut(s) | 1954 |
| PkrI | GCNGC | 7 cut(s) | 106, 546, 1324, 1327, 1330, 1558, 2134 |
| Ple19I | CGATCG | 1 cut(s) | 2076 |
| PleI | GAGTC | 5 cut(s) | 1790, 1795, 1940, 1945, 2004 |
| PpsI | GAGTC | 5 cut(s) | 1790, 1795, 1940, 1945, 2004 |
| Ppu21I | YACGTR | 1 cut(s) | 275 |
| Psp6I | CCWGG | 1 cut(s) | 1954 |
| PspGI | CCWGG | 1 cut(s) | 1954 |
| PstI | CTGCAG | 1 cut(s) | 364 |
| PsuI | RGATCY | 7 cut(s) | 15, 178, 356, 529, 1623, 1810, 1822 |
| PvuI | CGATCG | 1 cut(s) | 2076 |
| RsaI | GTAC | 7 cut(s) | 589, 882, 942, 1002, 1122, 1170, 1771 |
| RsaNI | GTAC | 7 cut(s) | 588, 881, 941, 1001, 1121, 1169, 1770 |
| SaqAI | TTAA | 4 cut(s) | 614, 1152, 1908, 1965 |
| SatI | GCNGC | 7 cut(s) | 105, 545, 1323, 1326, 1329, 1557, 2133 |
| SchI | GAGTC | 5 cut(s) | 1790, 1795, 1941, 1945, 2005 |
| ScrFI | CCNGG | 3 cut(s) | 1956, 2006, 2007 |
| SfaNI | GCATC | 1 cut(s) | 242 |
| SfcI | CTRYAG | 3 cut(s) | 360, 2127, 2190 |
| SmaI | CCCGGG | 1 cut(s) | 2007 |
| SmlI | CTYRAG | 3 cut(s) | 108, 472, 497 |
| SmoI | CTYRAG | 3 cut(s) | 108, 472, 497 |
| Sse9I | AATT | 5 cut(s) | 51, 278, 451, 987, 1148 |
| SsiI | CCGC | 4 cut(s) | 884, 944, 1242, 1265 |
| SspI | AATATT | 2 cut(s) | 259, 1059 |
| SspMI | CTAG | 3 cut(s) | 567, 1581, 1706 |
| StyD4I | CCNGG | 3 cut(s) | 1954, 2004, 2005 |
| TaaI | ACNGT | 8 cut(s) | 240, 328, 816, 1478, 1515, 1676, 2168, 2191 |
| TaiI | ACGT | 2 cut(s) | 277, 2123 |
| TaqI | TCGA | 4 cut(s) | 297, 537, 1799, 2037 |
| TasI | AATT | 5 cut(s) | 51, 278, 451, 987, 1148 |
| TatI | WGTACW | 1 cut(s) | 1168 |
| TfiI | GAWTC | 7 cut(s) | 308, 656, 728, 1225, 1358, 1456, 1862 |
| Tru1I | TTAA | 4 cut(s) | 614, 1152, 1908, 1965 |
| Tru9I | TTAA | 4 cut(s) | 614, 1152, 1908, 1965 |
| TscAI | CASTG | 5 cut(s) | 676, 1371, 1443, 1612, 1681 |
| TseFI | GTSAC | 4 cut(s) | 678, 1500, 1509, 2106 |
| TseI | GCWGC | 7 cut(s) | 104, 544, 1322, 1325, 1328, 1556, 2132 |
| Tsp45I | GTSAC | 4 cut(s) | 678, 1500, 1509, 2106 |
| TspGWI | ACGGA | 5 cut(s) | 21, 430, 757, 1271, 1720 |
| TspMI | CCCGGG | 1 cut(s) | 2005 |
| TspRI | CASTG | 5 cut(s) | 676, 1371, 1443, 1612, 1681 |
| XapI | RAATTY | 2 cut(s) | 987, 1148 |
| XceI | RCATGY | 3 cut(s) | 1322, 1749, 1974 |
| XmaI | CCCGGG | 1 cut(s) | 2005 |
| XmiI | GTMKAC | 1 cut(s) | 2123 |
| XspI | CTAG | 3 cut(s) | 567, 1581, 1706 |
| ZraI | GACGTC | 1 cut(s) | 2121 |