AT5G52230

methyl-CpG-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21207784 .. 21212072
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52230.3

Sequence Viewer

Length: 2241 bp
ATGAACGGAGAAGGGATCTCTGATGGTTTGTCGGCTGAGAGGAAAGTGGAAATTAGAGTGAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCTGCTCAAGGTTTACCTGAAGGATGGATCAAGAAACTTGAAATAACAAATAGATCAGGCCGTAAAACCAGAAGAGATCCATTCTTCATTGACCCTAAAAGTGAGTATATCTTTCAATCCTTCAAAGACGCATCACGGTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAAGAAAGTGATATCGAAGATGATGATTCCGGAAATGGAAAGACTGTTCTTCGTCTGGAGTATGTGGACAAGAGATCTGCAGATGATGTATTGGAAAAAGAGAAAACGATAGATGATGTCAGAAGAAGTAAACGGAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTGTAAAATGACTTCTGACTTGAGCATTGTAACCTCACAAGTTCTTGAGGATTTGGGGAAGAAGGAAGAGGTGAAAGATCCTATCGAAAAGCAGCTCATAGCGAAACGGGTTACTAGAAGCCAAACTAAAGCCAGTACGACTGAGGAAGTCGTCGTAGATTTAAAAAGAAATCTGTCTTCATCAAATGCAAAATCAGAAAAAGATTCTGTAAACTCCAGTGTAAGGTCACAAAAACCAAAGAAGGAAGCTGTTATGAAGGAAGAAGAGGAACAAGATTCTTCTGAGAAACGGATCACAAGGAGTAAAGTTGAAGAGAAGAAGAATGAGCTAAGTAATAGTGTAGCCCGACGAACATCAAAACGGTTAGCTGGTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAGCCAAAGTTCAACGAATAGTACCGCTTGATGATGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCGCCTGATGATGAACCGACGCCTGAACTGAAGACAAGAACCAAAATTCAACGAATAGTACCTCCTGATGATGAACCGACGCTTGAACTGAAGACAAGAACCAAAGTTCAACGAATATTACCTCCTGATGATGAACTGACGCCCGAACTGAAGTCAAGAACCAAAGTTCAACGAATAGTACCTCCTGATGATGAACTGACGCCTGAATTTAAGACGAGAACCAAAGTACAACAAAGAATACCTCCTGATGATGGCAGAGCCGGAAAGTGCAAGCAACCTGTGAATCATGTTACTACCAGCGGATCAAAAAAGACGGAAATACCGCTCAACAAGGAAGTAGCCCAAAGCTGTAATGAACAATCCTCTCAGAAACCACATGCTGCTGCTGCAACAAGCAACAATCGTGTGAGTGCAGATTCGGCAGTGGGAATACAAAATATCGGTAAAGCAGTAGGCAGGAAGCCTTCTAAAGACAAGAAGACGCTGAAATCACCACTGATAGTATATGAACTGAATCCAGTTTTTCATCTTGACGGTTACAAGCAGAAGGAAGAAATGTCACCTGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAGAAGACAGCAGCAGGCAAAAGAGTGGGAAGGTCTAGCCCAAAGGCTAACCTTACTACCAGTGTGAAACCAACTCAGATCTCGCCTCTGAGATCACCAAATAAAGGAAAGCAACCACATCCTTCTGACAGTGGTTCTGCCATTCAAAGGAGAAATAAACTAGCTAATGAGTATTCTAACTCATCCGTTGTAAGAGGCACATGCTCAGAAGTGATGGAGAAGAGTACCAACAGCTTCTCCTCTGCATTTGACTCGACTCTTGCAGATCTTTGTAAAGATCCTTGCATTGCCTTTGCTATCAAAACTCTAACCGGAGAATCTCTGTGTCTTCTCAACACTCCAGCGATCTCTTCTAATCCCATTAACAACCACACCAAGCAGAAAGGAGTCTCCTTTACCCCAGAGACTCCAGGAAATGTTAACACATGCTCTGAAAAACTGGTATTTCCGAGTCCACCCCCGGGTGCAAATATCTGGCAAGACCCGTGTATCGACTTTGCTATAAAAACTCTAACAGGCGCAATCCCGATCGGGTTAGATGAACCAGATACGAAGTCAAAGTCACAGGGGATGACGTCTACTACAGCAGCAACACAAGAAGCTAAAGGTAGGCAAAACAACTGTGATTATATGACGAACAAGACTGTAGGTAAACCTGATGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAA

Protein Analysis

746

Amino Acids

82.66

Weight (kDa)

9.34

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2123
AccBSI CCGCTC 1 cut(s) 1267
AccI GTMKAC 1 cut(s) 2123
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 4 cut(s) 884, 944, 1242, 1265
AclWI GGATC 7 cut(s) 23, 137, 173, 524, 752, 1252, 1817
AcsI RAATTY 2 cut(s) 987, 1148
AcuI CTGAAG 6 cut(s) 141, 872, 932, 992, 1052, 1112
AcyI GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
AfaI GTAC 7 cut(s) 589, 882, 942, 1002, 1122, 1170, 1771
AfiI CCNNNNNNNGG 5 cut(s) 675, 1193, 1649, 1692, 2006
AjnI CCWGG 1 cut(s) 1954
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 9 cut(s) 547, 701, 781, 821, 832, 1290, 1709, 1779, 2147
AluI AGCT 9 cut(s) 547, 701, 781, 821, 832, 1290, 1709, 1779, 2147
Alw26I GTCTC 3 cut(s) 242, 1939, 1943
AlwI GGATC 7 cut(s) 23, 137, 173, 524, 752, 1252, 1817
Ama87I CYCGRG 1 cut(s) 2005
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 7 cut(s) 104, 544, 1322, 1325, 1328, 1556, 2132
ApoI RAATTY 2 cut(s) 987, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 2090, 2122
AspLEI GCGC 1 cut(s) 2066
AsuC2I CCSGG 2 cut(s) 2006, 2007
AsuHPI GGTGA 5 cut(s) 535, 1425, 1494, 1503, 1632
AvaI CYCGRG 1 cut(s) 2005
BaeI ACNNNNGTAYC 2 cut(s) 2017, 2050
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BbsI GAAGAC 8 cut(s) 621, 860, 920, 980, 1040, 1427, 1556, 1865
BbvI GCAGC 7 cut(s) 91, 556, 1309, 1312, 1315, 1568, 2144
BccI CCATC 4 cut(s) 17, 120, 1187, 1753
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 1779, 1813
BciT130I CCWGG 1 cut(s) 1956
BcnI CCSGG 2 cut(s) 2006, 2007
BcoDI GTCTC 3 cut(s) 242, 1939, 1943
BfaI CTAG 3 cut(s) 567, 1581, 1706
BfmI CTRYAG 3 cut(s) 360, 2127, 2190
BglII AGATCT 3 cut(s) 356, 1623, 1810
BisI GCNGC 7 cut(s) 105, 545, 1323, 1326, 1329, 1557, 2133
BlsI GCNGC 7 cut(s) 106, 546, 1324, 1327, 1330, 1558, 2134
Bme1390I CCNGG 3 cut(s) 1956, 2006, 2007
BmeT110I CYCGRG 1 cut(s) 2005
BmrFI CCNGG 3 cut(s) 1956, 2006, 2007
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 8 cut(s) 621, 860, 920, 980, 1040, 1427, 1556, 1865
BpmI CTGGAG 4 cut(s) 359, 652, 1869, 1938
BpuEI CTTGAG 3 cut(s) 93, 493, 518
BpuMI CCSGG 2 cut(s) 2006, 2007
BsaAI YACGTR 1 cut(s) 275
BsaHI GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
BsaJI CCNNGG 2 cut(s) 2004, 2005
BsaWI WCCGGW 2 cut(s) 311, 1856
BsaXI ACNNNNNCTCC 2 cut(s) 1766, 1796
Bsc4I CCNNNNNNNGG 5 cut(s) 675, 1193, 1649, 1692, 2006
Bse1I ACTGG 6 cut(s) 256, 585, 669, 1460, 1605, 1989
Bse3DI GCAATG 1 cut(s) 1830
BseAI TCCGGA 1 cut(s) 311
BseBI CCWGG 1 cut(s) 1956
BseDI CCNNGG 2 cut(s) 2004, 2005
BseGI GGATG 4 cut(s) 131, 1663, 1727, 2121
BseLI CCNNNNNNNGG 5 cut(s) 675, 1193, 1649, 1692, 2006
BseMI GCAATG 1 cut(s) 1830
BseMII CTCAG 7 cut(s) 27, 585, 726, 1322, 1625, 1634, 1764
BseNI ACTGG 6 cut(s) 256, 585, 669, 1460, 1605, 1989
BseRI GAGGAG 1 cut(s) 1774
BseXI GCAGC 7 cut(s) 91, 556, 1309, 1312, 1315, 1568, 2144
BsgI GTGCAG 1 cut(s) 1374
Bsh1285I CGRYCG 1 cut(s) 2076
BshFI GGCC 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 2076
BsiHKCI CYCGRG 1 cut(s) 2005
BsiSI CCGG 4 cut(s) 312, 1203, 1857, 2006
BslI CCNNNNNNNGG 5 cut(s) 675, 1193, 1649, 1692, 2006
BsmAI GTCTC 3 cut(s) 242, 1939, 1943
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 2005
Bsp13I TCCGGA 1 cut(s) 311
BspACI CCGC 4 cut(s) 884, 944, 1242, 1265
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 7 cut(s) 28, 586, 727, 1321, 1626, 1633, 1763
BspEI TCCGGA 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 7 cut(s) 23, 137, 173, 524, 752, 1252, 1817
BsrBI CCGCTC 1 cut(s) 1267
BsrDI GCAATG 1 cut(s) 1830
BsrI ACTGG 6 cut(s) 256, 585, 669, 1460, 1605, 1989
BssECI CCNNGG 2 cut(s) 2004, 2005
BssNI GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
Bst2UI CCWGG 1 cut(s) 1956
Bst4CI ACNGT 8 cut(s) 240, 328, 816, 1478, 1515, 1676, 2168, 2191
Bst6I CTCTTC 6 cut(s) 169, 513, 711, 759, 1760, 1900
BstACI GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 1214, 1561
BstF5I GGATG 4 cut(s) 131, 1663, 1727, 2121
BstHHI GCGC 1 cut(s) 2066
BstMAI GTCTC 3 cut(s) 242, 1939, 1943
BstMCI CGRYCG 1 cut(s) 2076
BstMWI GCNNNNNNNGC 2 cut(s) 1328, 1361
BstNI CCWGG 1 cut(s) 1956
BstNSI RCATGY 3 cut(s) 1322, 1749, 1974
BstSCI CCNGG 3 cut(s) 1954, 2004, 2005
BstSFI CTRYAG 3 cut(s) 360, 2127, 2190
BstV1I GCAGC 7 cut(s) 91, 556, 1309, 1312, 1315, 1568, 2144
BstV2I GAAGAC 8 cut(s) 621, 860, 920, 980, 1040, 1427, 1556, 1865
BstX2I RGATCY 7 cut(s) 15, 178, 356, 529, 1623, 1810, 1822
BstYI RGATCY 7 cut(s) 15, 178, 356, 529, 1623, 1810, 1822
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 4 cut(s) 131, 1663, 1727, 2121
BtsI GCAGTG 1 cut(s) 1371
BtsIMutI CAGTG 5 cut(s) 676, 1371, 1436, 1612, 1681
Cac8I GCNNGC 2 cut(s) 1214, 1561
CfoI GCGC 1 cut(s) 2066
Cfr9I CCCGGG 1 cut(s) 2005
CseI GACGC 7 cut(s) 239, 910, 970, 1030, 1090, 1150, 1432
Csp6I GTAC 7 cut(s) 588, 881, 941, 1001, 1121, 1169, 1770
CviAII CATG 4 cut(s) 1229, 1319, 1746, 1971
CviQI GTAC 7 cut(s) 588, 881, 941, 1001, 1121, 1169, 1770
DraI TTTAAA 1 cut(s) 615
Eam1104I CTCTTC 6 cut(s) 169, 513, 711, 759, 1760, 1900
EarI CTCTTC 6 cut(s) 169, 513, 711, 759, 1760, 1900
Eco32I GATATC 1 cut(s) 295
Eco57I CTGAAG 6 cut(s) 141, 872, 932, 992, 1052, 1112
Eco88I CYCGRG 1 cut(s) 2005
EcoRII CCWGG 1 cut(s) 1954
EcoRV GATATC 1 cut(s) 295
FaeI CATG 4 cut(s) 1232, 1322, 1749, 1974
FatI CATG 4 cut(s) 1228, 1318, 1745, 1970
FblI GTMKAC 1 cut(s) 2123
Fnu4HI GCNGC 7 cut(s) 105, 545, 1323, 1326, 1329, 1557, 2133
FokI GGATG 4 cut(s) 138, 1650, 1714, 2128
Fsp4HI GCNGC 7 cut(s) 105, 545, 1323, 1326, 1329, 1557, 2133
FspBI CTAG 3 cut(s) 567, 1581, 1706
GlaI GCGC 1 cut(s) 2065
GluI GCNGC 7 cut(s) 105, 545, 1323, 1326, 1329, 1557, 2133
GsuI CTGGAG 4 cut(s) 359, 652, 1869, 1938
HaeIII GGCC 1 cut(s) 162
HapII CCGG 4 cut(s) 312, 1203, 1857, 2006
HgaI GACGC 7 cut(s) 239, 910, 970, 1030, 1090, 1150, 1432
HhaI GCGC 1 cut(s) 2066
Hin1I GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
Hin1II CATG 4 cut(s) 1232, 1322, 1749, 1974
Hin6I GCGC 1 cut(s) 2064
HinP1I GCGC 1 cut(s) 2064
HincII GTYRAC 1 cut(s) 1966
HindII GTYRAC 1 cut(s) 1966
HpaI GTTAAC 1 cut(s) 1966
HpaII CCGG 4 cut(s) 312, 1203, 1857, 2006
HphI GGTGA 5 cut(s) 535, 1425, 1494, 1503, 1632
Hpy166II GTNNAC 9 cut(s) 116, 349, 413, 664, 1966, 2000, 2124, 2198, 2217
Hpy8I GTNNAC 9 cut(s) 116, 349, 413, 664, 1966, 2000, 2124, 2198, 2217
Hpy99I CGWCG 5 cut(s) 608, 804, 904, 964, 1024
HpyCH4III ACNGT 8 cut(s) 240, 328, 816, 1478, 1515, 1676, 2168, 2191
HpyCH4IV ACGT 2 cut(s) 274, 2120
HpyF10VI GCNNNNNNNGC 2 cut(s) 1328, 1361
HpySE526I ACGT 2 cut(s) 274, 2120
Hsp92I GRCGYC 5 cut(s) 902, 962, 1082, 1142, 2120
Hsp92II CATG 4 cut(s) 1232, 1322, 1749, 1974
HspAI GCGC 1 cut(s) 2064
Kpn2I TCCGGA 1 cut(s) 311
KspAI GTTAAC 1 cut(s) 1966
Lsp1109I GCAGC 7 cut(s) 91, 556, 1309, 1312, 1315, 1568, 2144
LweI GCATC 1 cut(s) 242
MaeI CTAG 3 cut(s) 567, 1581, 1706
MaeII ACGT 2 cut(s) 274, 2120
MaeIII GTNAC 8 cut(s) 481, 562, 678, 1231, 1478, 1500, 1509, 2106
MbiI CCGCTC 1 cut(s) 1267
MflI RGATCY 7 cut(s) 15, 178, 356, 529, 1623, 1810, 1822
MluCI AATT 5 cut(s) 51, 278, 451, 987, 1148
MlyI GAGTC 5 cut(s) 1790, 1795, 1941, 1945, 2005
MroI TCCGGA 1 cut(s) 311
MseI TTAA 4 cut(s) 614, 1152, 1908, 1965
MspA1I CMGCKG 1 cut(s) 1242
MspI CCGG 4 cut(s) 312, 1203, 1857, 2006
MspR9I CCNGG 3 cut(s) 1956, 2006, 2007
MvaI CCWGG 1 cut(s) 1956
MwoI GCNNNNNNNGC 2 cut(s) 1328, 1361
NciI CCSGG 2 cut(s) 2006, 2007
NlaIII CATG 4 cut(s) 1232, 1322, 1749, 1974
NmuCI GTSAC 4 cut(s) 678, 1500, 1509, 2106
NspI RCATGY 3 cut(s) 1322, 1749, 1974
PfeI GAWTC 7 cut(s) 308, 656, 728, 1225, 1358, 1456, 1862
PfoI TCCNGGA 1 cut(s) 1954
PkrI GCNGC 7 cut(s) 106, 546, 1324, 1327, 1330, 1558, 2134
Ple19I CGATCG 1 cut(s) 2076
PleI GAGTC 5 cut(s) 1790, 1795, 1940, 1945, 2004
PpsI GAGTC 5 cut(s) 1790, 1795, 1940, 1945, 2004
Ppu21I YACGTR 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 1954
PspGI CCWGG 1 cut(s) 1954
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 7 cut(s) 15, 178, 356, 529, 1623, 1810, 1822
PvuI CGATCG 1 cut(s) 2076
RsaI GTAC 7 cut(s) 589, 882, 942, 1002, 1122, 1170, 1771
RsaNI GTAC 7 cut(s) 588, 881, 941, 1001, 1121, 1169, 1770
SaqAI TTAA 4 cut(s) 614, 1152, 1908, 1965
SatI GCNGC 7 cut(s) 105, 545, 1323, 1326, 1329, 1557, 2133
SchI GAGTC 5 cut(s) 1790, 1795, 1941, 1945, 2005
ScrFI CCNGG 3 cut(s) 1956, 2006, 2007
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 3 cut(s) 360, 2127, 2190
SmaI CCCGGG 1 cut(s) 2007
SmlI CTYRAG 3 cut(s) 108, 472, 497
SmoI CTYRAG 3 cut(s) 108, 472, 497
Sse9I AATT 5 cut(s) 51, 278, 451, 987, 1148
SsiI CCGC 4 cut(s) 884, 944, 1242, 1265
SspI AATATT 2 cut(s) 259, 1059
SspMI CTAG 3 cut(s) 567, 1581, 1706
StyD4I CCNGG 3 cut(s) 1954, 2004, 2005
TaaI ACNGT 8 cut(s) 240, 328, 816, 1478, 1515, 1676, 2168, 2191
TaiI ACGT 2 cut(s) 277, 2123
TaqI TCGA 4 cut(s) 297, 537, 1799, 2037
TasI AATT 5 cut(s) 51, 278, 451, 987, 1148
TatI WGTACW 1 cut(s) 1168
TfiI GAWTC 7 cut(s) 308, 656, 728, 1225, 1358, 1456, 1862
Tru1I TTAA 4 cut(s) 614, 1152, 1908, 1965
Tru9I TTAA 4 cut(s) 614, 1152, 1908, 1965
TscAI CASTG 5 cut(s) 676, 1371, 1443, 1612, 1681
TseFI GTSAC 4 cut(s) 678, 1500, 1509, 2106
TseI GCWGC 7 cut(s) 104, 544, 1322, 1325, 1328, 1556, 2132
Tsp45I GTSAC 4 cut(s) 678, 1500, 1509, 2106
TspGWI ACGGA 5 cut(s) 21, 430, 757, 1271, 1720
TspMI CCCGGG 1 cut(s) 2005
TspRI CASTG 5 cut(s) 676, 1371, 1443, 1612, 1681
XapI RAATTY 2 cut(s) 987, 1148
XceI RCATGY 3 cut(s) 1322, 1749, 1974
XmaI CCCGGG 1 cut(s) 2005
XmiI GTMKAC 1 cut(s) 2123
XspI CTAG 3 cut(s) 567, 1581, 1706
ZraI GACGTC 1 cut(s) 2121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.