Prupe.2G292800_v2.0.a1

methyl-CpG-binding domain-containing protein 13

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
28549690 .. 28553248
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G292800.5

Sequence Viewer

Length: 1644 bp
ATGACGGACCAAAAATCCGAAGACTGGCTCCCAACTGGTTGGACCGTTGAGGTCAAAGTTAGAAATAACGGTAAAAGAGACAAGTATTATTACGATACCACAAGTGGACATAAATTCAATTCCAAGGCAGAGGTATCTCGCTATCTCAACACCTCTCAAATCAGCGATGAAGTCAAACAGAAAGTTGAAGAGACTTTGAAGCGATCAGCAAATGATGTTGTGGTTGAGAAGACTATAGCAGAAGGACTACCTCAAGGATGGATCAAAGAAATTCGGATGACAAAAAAGGATCATAAGATCAGGAGAGACTCGTACTATATTGATCCTGTAAGTGAAAAATTATTCCGCTCTATGAAGGATGTGAATCGCTATCTTGAAAATGAGGAGCCAAGAAGGCTAATTCTAGAGCCAAGTCATGGTATTGATAAGGAATTGGAAGATGAAAAAGCCTCTAGCTCGCACTTGAATGAGATCATGAAGGATGGACAGATACTTAATCTAGCATGTAAGGGAGAAAGCCCGACCTTTCCAGCACAAACTTCTGATCAGACTGAGGTGGACACTGAATCAGGCTGCTTAAATCCAACAGAAGCCAAAGGTTCGGAGCAGAAAGAACAGGACGGTAATTCTTACAAAAGTGAATTTATTTCAGTTCCAGCAGGTGTTGGCCTGGCAGATAAGCAATGCCTGGAAAGTGGGCTCTTTAAACATGAAAGTAAAAAGACCCAACGTAGCCTGGGCAAGTCCAAGAAGAAGAAAGAGCTGAACTTGCCTCGTCGTGCTTCAAAGCGACTAGCTGGAGTTGAAGTTGATCCAGTGCCAGAACTGAAAACAAGTACTCGAGCACGTCGAGTTACAATTAAACAATCAGGGGAAGGAGTACATAGTACAACTGAAGGTTCTTCTTCAGGTAATTCCACTGGTTCTGTATTCCGACAGCCTGGTTATCCTGAGGTTGAGCCAGAAAAGCATGTTCAAAATGTGGAAACAATGAATAGTGGTGACGAGAAGCAAATGTGTGCTTCTGTTTTCCCAGAAGAACATGCAGGAAAACTTGAAACCACTGATAAGGCAGAAGGGAAGCCAGGACTTCAACCAGACCTGCCGCTGGGGGATTTCTTGACAGATCCATGCATTGCATTTGCAATAGAGACTCTCACTGGAATAGCTTTTGACAATTCCAGGAGCAATAGTGAGCAATCTTCAGGTGACTTGGCTACTCCCAAAGATCGTTCTGGAAACAAAGAAGAAGACAATAAGAGGAGTGATGTTGTTTTGGCTCCTGGCAACCTTTTTATACCAGAACAACATGGGGGAAAAGTTGGAAAGGATGATAAGGCTGAACAGAAGTCAGGATCCCCAGTGGAGTTGCCTTTCGGGGGTTTATGGCCAGACCCATGCATTGAATTTGCTATAAAAACTCTCACAGGTGCAATCCCACTGGACTATGATCCTCATATTGAGGAGTATTTTCAGCAGCAACTAAGCTCATCAAGAACCCAAGGAAACAGTGACTTGACCTTGAAAAATGTTGGTCTAGATAACTTCTGCCAAACTGATGTTTTGTGCCAGCAATTTTCAGAGCCTGCACACACCAGGAATGCAAGTTTACATAGTTCTGGTGGATCAGGTACAAACCAATAG

Protein Analysis

548

Amino Acids

60.52

Weight (kDa)

5.47

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
Acc36I ACCTGC 2 cut(s) 650, 1110
AccB7I CCANNNNNTGG 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 348
AciI CCGC 2 cut(s) 346, 1106
AclWI GGATC 9 cut(s) 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633
AcoI YGGCCR 1 cut(s) 1388
AcsI RAATTY 4 cut(s) 113, 270, 641, 1406
AcuI CTGAAG 3 cut(s) 891, 915, 1188
AfaI GTAC 5 cut(s) 314, 838, 882, 889, 1633
AfiI CCNNNNNNNGG 4 cut(s) 24, 416, 1108, 1379
AjiI CACGTC 1 cut(s) 848
AjnI CCWGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
AluBI AGCT 5 cut(s) 456, 763, 797, 1169, 1488
AluI AGCT 5 cut(s) 456, 763, 797, 1169, 1488
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 4 cut(s) 72, 185, 300, 1145
AlwI GGATC 9 cut(s) 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633
AlwNI CAGNNNCTG 1 cut(s) 1586
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 2 cut(s) 667, 1388
ApeKI GCWGC 2 cut(s) 573, 1477
ApoI RAATTY 4 cut(s) 113, 270, 641, 1406
AspS9I GGNCC 2 cut(s) 7, 42
AsuHPI GGTGA 2 cut(s) 1013, 1220
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 2 cut(s) 7, 42
AxyI CCTNAGG 1 cut(s) 951
BalI TGGCCA 1 cut(s) 1390
BamHI GGATCC 1 cut(s) 1355
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 3 cut(s) 27, 236, 1257
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 2 cut(s) 560, 1489
BccI CCATC 2 cut(s) 252, 476
BciT130I CCWGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 4 cut(s) 72, 185, 300, 1145
BfaI CTAG 5 cut(s) 404, 453, 500, 794, 1538
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 2 cut(s) 650, 1110
BglI GCCNNNNNGGC 1 cut(s) 394
BisI GCNGC 3 cut(s) 574, 1106, 1478
BlsI GCNGC 3 cut(s) 575, 1107, 1479
BmcAI AGTACT 1 cut(s) 838
Bme1390I CCNGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
Bme18I GGWCC 2 cut(s) 7, 42
BmeT110I CYCGRG 1 cut(s) 840
BmgBI CACGTC 1 cut(s) 848
BmgT120I GGNCC 2 cut(s) 7, 42
BmiI GGNNCC 4 cut(s) 29, 387, 1281, 1357
BmrFI CCNGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
BmrI ACTGGG 1 cut(s) 1355
BmuI ACTGGG 1 cut(s) 1355
BpiI GAAGAC 3 cut(s) 27, 236, 1257
BpmI CTGGAG 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 123, 736, 1501
BsaXI ACNNNNNCTCC 4 cut(s) 792, 822, 1177, 1207
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 416, 1108, 1379
Bse1I ACTGG 7 cut(s) 29, 40, 815, 925, 1165, 1361, 1446
Bse21I CCTNAGG 1 cut(s) 951
Bse3DI GCAATG 2 cut(s) 689, 1134
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
BseDI CCNNGG 3 cut(s) 123, 736, 1501
BseGI GGATG 5 cut(s) 263, 282, 364, 487, 1336
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 4 cut(s) 24, 416, 1108, 1379
BseMI GCAATG 2 cut(s) 689, 1134
BseMII CTCAG 2 cut(s) 543, 942
BseNI ACTGG 7 cut(s) 29, 40, 815, 925, 1165, 1361, 1446
BseRI GAGGAG 3 cut(s) 398, 1276, 1478
BseXI GCAGC 2 cut(s) 560, 1489
BseYI CCCAGC 1 cut(s) 1108
BsgI GTGCAG 1 cut(s) 1572
BshFI GGCC 2 cut(s) 669, 1390
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 840
BslI CCNNNNNNNGG 4 cut(s) 24, 416, 1108, 1379
BsmAI GTCTC 4 cut(s) 72, 185, 300, 1145
BsmI GAATGC 1 cut(s) 1606
BsnI GGCC 2 cut(s) 669, 1390
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 702, 847
BspACI CCGC 2 cut(s) 346, 1106
BspANI GGCC 2 cut(s) 669, 1390
BspCNI CTCAG 2 cut(s) 544, 943
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 29, 387, 1281, 1357
BspMI ACCTGC 2 cut(s) 650, 1110
BspPI GGATC 9 cut(s) 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633
BsrBI CCGCTC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 689, 1134
BsrI ACTGG 7 cut(s) 29, 40, 815, 925, 1165, 1361, 1446
BssECI CCNNGG 3 cut(s) 123, 736, 1501
BssT1I CCWWGG 2 cut(s) 123, 1501
Bst2UI CCWGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
Bst4CI ACNGT 4 cut(s) 46, 71, 623, 1511
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 458, 1571, 1587
BstDEI CTNAG 3 cut(s) 552, 951, 1484
BstF5I GGATG 5 cut(s) 263, 282, 364, 487, 1336
BstMAI GTCTC 4 cut(s) 72, 185, 300, 1145
BstMWI GCNNNNNNNGC 3 cut(s) 394, 769, 967
BstNI CCWGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
BstNSI RCATGY 3 cut(s) 507, 974, 1046
BstSCI CCNGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 560, 1489
BstV2I GAAGAC 3 cut(s) 27, 236, 1257
BstX2I RGATCY 2 cut(s) 1126, 1355
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 2 cut(s) 1126, 1355
Bsu36I CCTNAGG 1 cut(s) 951
BsuRI GGCC 2 cut(s) 669, 1390
BtgZI GCGATG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 848
BtsCI GGATG 5 cut(s) 263, 282, 364, 487, 1336
BtsIMutI CAGTG 8 cut(s) 561, 822, 918, 1062, 1158, 1368, 1439, 1516
BveI ACCTGC 2 cut(s) 650, 1110
Cac8I GCNNGC 3 cut(s) 458, 1571, 1587
CaiI CAGNNNCTG 1 cut(s) 1586
CciI TCATGA 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 7, 42
Csp6I GTAC 5 cut(s) 313, 837, 881, 888, 1632
CviAII CATG 9 cut(s) 416, 475, 504, 710, 971, 1043, 1131, 1310, 1398
CviQI GTAC 5 cut(s) 313, 837, 881, 888, 1632
DdeI CTNAG 3 cut(s) 552, 951, 1484
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 1388
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 123, 1501
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 2 cut(s) 7, 42
Eco57I CTGAAG 3 cut(s) 891, 915, 1188
Eco81I CCTNAGG 1 cut(s) 951
Eco88I CYCGRG 1 cut(s) 840
EcoRII CCWGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
EcoT14I CCWWGG 2 cut(s) 123, 1501
EcoT22I ATGCAT 2 cut(s) 1136, 1403
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 123, 1501
FaeI CATG 9 cut(s) 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401
FatI CATG 9 cut(s) 415, 474, 503, 709, 970, 1042, 1130, 1309, 1397
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 574, 1106, 1478
FokI GGATG 5 cut(s) 270, 289, 371, 494, 1343
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 3 cut(s) 574, 1106, 1478
FspBI CTAG 5 cut(s) 404, 453, 500, 794, 1538
GluI GCNGC 3 cut(s) 574, 1106, 1478
GsaI CCCAGC 1 cut(s) 1112
GsuI CTGGAG 1 cut(s) 819
HaeIII GGCC 2 cut(s) 669, 1390
Hin1II CATG 9 cut(s) 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401
HinfI GANTC 4 cut(s) 308, 364, 566, 1153
HphI GGTGA 2 cut(s) 1013, 1220
Hpy166II GTNNAC 3 cut(s) 107, 559, 1610
Hpy188I TCNGA 7 cut(s) 19, 276, 544, 549, 604, 935, 1582
Hpy8I GTNNAC 3 cut(s) 107, 559, 1610
Hpy99I CGWCG 2 cut(s) 780, 852
HpyAV CCTTC 7 cut(s) 236, 349, 387, 472, 869, 890, 1070
HpyCH4III ACNGT 4 cut(s) 46, 71, 623, 1511
HpyCH4IV ACGT 2 cut(s) 730, 847
HpyCH4V TGCA 8 cut(s) 1046, 1134, 1139, 1145, 1401, 1433, 1589, 1604
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 769, 967
HpyF3I CTNAG 3 cut(s) 552, 951, 1484
HpySE526I ACGT 2 cut(s) 730, 847
Hsp92II CATG 9 cut(s) 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401
Ksp22I TGATCA 1 cut(s) 544
LmnI GCTCC 5 cut(s) 33, 385, 604, 1185, 1285
Lsp1109I GCAGC 2 cut(s) 560, 1489
MaeI CTAG 5 cut(s) 404, 453, 500, 794, 1538
MaeII ACGT 2 cut(s) 730, 847
MaeIII GTNAC 4 cut(s) 853, 1001, 1208, 1511
MbiI CCGCTC 1 cut(s) 348
MflI RGATCY 2 cut(s) 1126, 1355
MhlI GDGCHC 2 cut(s) 702, 847
MlsI TGGCCA 1 cut(s) 1390
MluNI TGGCCA 1 cut(s) 1390
MlyI GAGTC 2 cut(s) 302, 1147
MmeI TCCRAC 4 cut(s) 20, 608, 958, 1303
Mox20I TGGCCA 1 cut(s) 1390
Mph1103I ATGCAT 2 cut(s) 1136, 1403
MscI TGGCCA 1 cut(s) 1390
MseI TTAA 4 cut(s) 495, 578, 705, 861
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 1390
MspA1I CMGCKG 1 cut(s) 1108
MspR9I CCNGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
Mva1269I GAATGC 1 cut(s) 1606
MvaI CCWGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
MwoI GCNNNNNNNGC 3 cut(s) 394, 769, 967
NlaIII CATG 9 cut(s) 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401
NlaIV GGNNCC 4 cut(s) 29, 387, 1281, 1357
NmuCI GTSAC 3 cut(s) 1001, 1208, 1511
NsiI ATGCAT 2 cut(s) 1136, 1403
NspI RCATGY 3 cut(s) 507, 974, 1046
PaeR7I CTCGAG 1 cut(s) 840
PagI TCATGA 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 847
PctI GAATGC 1 cut(s) 1606
PfeI GAWTC 2 cut(s) 364, 566
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 1181
PkrI GCNGC 3 cut(s) 575, 1107, 1479
PleI GAGTC 2 cut(s) 302, 1147
PpsI GAGTC 2 cut(s) 302, 1147
Psp6I CCWGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
PspFI CCCAGC 1 cut(s) 1108
PspGI CCWGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
PspN4I GGNNCC 4 cut(s) 29, 387, 1281, 1357
PspPI GGNCC 2 cut(s) 7, 42
PspXI VCTCGAGB 1 cut(s) 840
PstNI CAGNNNCTG 1 cut(s) 1586
PsuI RGATCY 2 cut(s) 1126, 1355
RsaI GTAC 5 cut(s) 314, 838, 882, 889, 1633
RsaNI GTAC 5 cut(s) 313, 837, 881, 888, 1632
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 4 cut(s) 495, 578, 705, 861
SatI GCNGC 3 cut(s) 574, 1106, 1478
Sau96I GGNCC 2 cut(s) 7, 42
ScaI AGTACT 1 cut(s) 838
SchI GAGTC 2 cut(s) 302, 1147
ScrFI CCNGG 8 cut(s) 671, 689, 737, 942, 1086, 1183, 1284, 1597
SduI GDGCHC 2 cut(s) 702, 847
SfcI CTRYAG 1 cut(s) 234
Sfr274I CTCGAG 1 cut(s) 840
SinI GGWCC 2 cut(s) 7, 42
SlaI CTCGAG 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 252, 840
SmoI CTYRAG 2 cut(s) 252, 840
SsiI CCGC 2 cut(s) 346, 1106
SspMI CTAG 5 cut(s) 404, 453, 500, 794, 1538
StyD4I CCNGG 8 cut(s) 669, 687, 735, 940, 1084, 1181, 1282, 1595
StyI CCWWGG 2 cut(s) 123, 1501
TaaI ACNGT 4 cut(s) 46, 71, 623, 1511
TaiI ACGT 2 cut(s) 733, 850
TaqI TCGA 2 cut(s) 841, 850
TatI WGTACW 3 cut(s) 836, 880, 887
TauI GCSGC 1 cut(s) 1108
TfiI GAWTC 2 cut(s) 364, 566
Tru1I TTAA 4 cut(s) 495, 578, 705, 861
Tru9I TTAA 4 cut(s) 495, 578, 705, 861
TscAI CASTG 8 cut(s) 568, 822, 925, 1069, 1165, 1368, 1446, 1516
TseFI GTSAC 3 cut(s) 1001, 1208, 1511
TseI GCWGC 2 cut(s) 573, 1477
Tsp45I GTSAC 3 cut(s) 1001, 1208, 1511
TspDTI ATGAA 6 cut(s) 183, 368, 456, 491, 726, 1007
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 8 cut(s) 568, 822, 925, 1069, 1165, 1368, 1446, 1516
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 7, 42
XapI RAATTY 4 cut(s) 113, 270, 641, 1406
XbaI TCTAGA 2 cut(s) 403, 1537
XceI RCATGY 3 cut(s) 507, 974, 1046
XhoI CTCGAG 1 cut(s) 840
XspI CTAG 5 cut(s) 404, 453, 500, 794, 1538
ZrmI AGTACT 1 cut(s) 838
Zsp2I ATGCAT 2 cut(s) 1136, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.