methyl-CpG-binding domain-containing protein 13
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52230 AT5G52230 AT5G52230 |
| fragaria_vesca | FvH4_7g29290 FvH4_7g29290 |
| malus_domestica | MD01G1199300.v1.1 MD07G1267200.v1.1 |
| prunus_persica | Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 |
| pyrus_communis | pycom01g20920 pycom07g24480 |
| rosa_chinensis | RchiOBHm_Chr1g0377031 |
| rosa_laevigata | RLG00000026548 |
| rosa_multiflora | Rmu_ssc0000155.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00281510 |
| rosa_rugosa | Rorug01G0401000 Rorug01G0401100 |
| rosa_samantha | Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000 |
| rosa_wichuraiana | Rw1G036700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 650 |
| Acc36I | ACCTGC | 2 cut(s) | 650, 1110 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 416 |
| AccBSI | CCGCTC | 1 cut(s) | 348 |
| AciI | CCGC | 2 cut(s) | 346, 1106 |
| AclWI | GGATC | 9 cut(s) | 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633 |
| AcoI | YGGCCR | 1 cut(s) | 1388 |
| AcsI | RAATTY | 4 cut(s) | 113, 270, 641, 1406 |
| AcuI | CTGAAG | 3 cut(s) | 891, 915, 1188 |
| AfaI | GTAC | 5 cut(s) | 314, 838, 882, 889, 1633 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 24, 416, 1108, 1379 |
| AjiI | CACGTC | 1 cut(s) | 848 |
| AjnI | CCWGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| AluBI | AGCT | 5 cut(s) | 456, 763, 797, 1169, 1488 |
| AluI | AGCT | 5 cut(s) | 456, 763, 797, 1169, 1488 |
| Alw21I | GWGCWC | 1 cut(s) | 847 |
| Alw26I | GTCTC | 4 cut(s) | 72, 185, 300, 1145 |
| AlwI | GGATC | 9 cut(s) | 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1586 |
| Ama87I | CYCGRG | 1 cut(s) | 840 |
| AoxI | GGCC | 2 cut(s) | 667, 1388 |
| ApeKI | GCWGC | 2 cut(s) | 573, 1477 |
| ApoI | RAATTY | 4 cut(s) | 113, 270, 641, 1406 |
| AspS9I | GGNCC | 2 cut(s) | 7, 42 |
| AsuHPI | GGTGA | 2 cut(s) | 1013, 1220 |
| AvaI | CYCGRG | 1 cut(s) | 840 |
| AvaII | GGWCC | 2 cut(s) | 7, 42 |
| AxyI | CCTNAGG | 1 cut(s) | 951 |
| BalI | TGGCCA | 1 cut(s) | 1390 |
| BamHI | GGATCC | 1 cut(s) | 1355 |
| BanII | GRGCYC | 1 cut(s) | 702 |
| BbsI | GAAGAC | 3 cut(s) | 27, 236, 1257 |
| Bbv12I | GWGCWC | 1 cut(s) | 847 |
| BbvI | GCAGC | 2 cut(s) | 560, 1489 |
| BccI | CCATC | 2 cut(s) | 252, 476 |
| BciT130I | CCWGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| BclI | TGATCA | 1 cut(s) | 544 |
| BcoDI | GTCTC | 4 cut(s) | 72, 185, 300, 1145 |
| BfaI | CTAG | 5 cut(s) | 404, 453, 500, 794, 1538 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BfuAI | ACCTGC | 2 cut(s) | 650, 1110 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 394 |
| BisI | GCNGC | 3 cut(s) | 574, 1106, 1478 |
| BlsI | GCNGC | 3 cut(s) | 575, 1107, 1479 |
| BmcAI | AGTACT | 1 cut(s) | 838 |
| Bme1390I | CCNGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| Bme18I | GGWCC | 2 cut(s) | 7, 42 |
| BmeT110I | CYCGRG | 1 cut(s) | 840 |
| BmgBI | CACGTC | 1 cut(s) | 848 |
| BmgT120I | GGNCC | 2 cut(s) | 7, 42 |
| BmiI | GGNNCC | 4 cut(s) | 29, 387, 1281, 1357 |
| BmrFI | CCNGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| BmrI | ACTGGG | 1 cut(s) | 1355 |
| BmuI | ACTGGG | 1 cut(s) | 1355 |
| BpiI | GAAGAC | 3 cut(s) | 27, 236, 1257 |
| BpmI | CTGGAG | 1 cut(s) | 819 |
| BpuEI | CTTGAG | 1 cut(s) | 237 |
| BsaBI | GATNNNNATC | 1 cut(s) | 363 |
| BsaJI | CCNNGG | 3 cut(s) | 123, 736, 1501 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 792, 822, 1177, 1207 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 24, 416, 1108, 1379 |
| Bse1I | ACTGG | 7 cut(s) | 29, 40, 815, 925, 1165, 1361, 1446 |
| Bse21I | CCTNAGG | 1 cut(s) | 951 |
| Bse3DI | GCAATG | 2 cut(s) | 689, 1134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 363 |
| BseBI | CCWGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| BseDI | CCNNGG | 3 cut(s) | 123, 736, 1501 |
| BseGI | GGATG | 5 cut(s) | 263, 282, 364, 487, 1336 |
| BseJI | GATNNNNATC | 1 cut(s) | 363 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 24, 416, 1108, 1379 |
| BseMI | GCAATG | 2 cut(s) | 689, 1134 |
| BseMII | CTCAG | 2 cut(s) | 543, 942 |
| BseNI | ACTGG | 7 cut(s) | 29, 40, 815, 925, 1165, 1361, 1446 |
| BseRI | GAGGAG | 3 cut(s) | 398, 1276, 1478 |
| BseXI | GCAGC | 2 cut(s) | 560, 1489 |
| BseYI | CCCAGC | 1 cut(s) | 1108 |
| BsgI | GTGCAG | 1 cut(s) | 1572 |
| BshFI | GGCC | 2 cut(s) | 669, 1390 |
| BsiHKAI | GWGCWC | 1 cut(s) | 847 |
| BsiHKCI | CYCGRG | 1 cut(s) | 840 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 24, 416, 1108, 1379 |
| BsmAI | GTCTC | 4 cut(s) | 72, 185, 300, 1145 |
| BsmI | GAATGC | 1 cut(s) | 1606 |
| BsnI | GGCC | 2 cut(s) | 669, 1390 |
| BsoBI | CYCGRG | 1 cut(s) | 840 |
| Bsp1286I | GDGCHC | 2 cut(s) | 702, 847 |
| BspACI | CCGC | 2 cut(s) | 346, 1106 |
| BspANI | GGCC | 2 cut(s) | 669, 1390 |
| BspCNI | CTCAG | 2 cut(s) | 544, 943 |
| BspHI | TCATGA | 1 cut(s) | 474 |
| BspLI | GGNNCC | 4 cut(s) | 29, 387, 1281, 1357 |
| BspMI | ACCTGC | 2 cut(s) | 650, 1110 |
| BspPI | GGATC | 9 cut(s) | 269, 297, 317, 806, 1121, 1350, 1363, 1445, 1633 |
| BsrBI | CCGCTC | 1 cut(s) | 348 |
| BsrDI | GCAATG | 2 cut(s) | 689, 1134 |
| BsrI | ACTGG | 7 cut(s) | 29, 40, 815, 925, 1165, 1361, 1446 |
| BssECI | CCNNGG | 3 cut(s) | 123, 736, 1501 |
| BssT1I | CCWWGG | 2 cut(s) | 123, 1501 |
| Bst2UI | CCWGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| Bst4CI | ACNGT | 4 cut(s) | 46, 71, 623, 1511 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 3 cut(s) | 458, 1571, 1587 |
| BstDEI | CTNAG | 3 cut(s) | 552, 951, 1484 |
| BstF5I | GGATG | 5 cut(s) | 263, 282, 364, 487, 1336 |
| BstMAI | GTCTC | 4 cut(s) | 72, 185, 300, 1145 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 394, 769, 967 |
| BstNI | CCWGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| BstNSI | RCATGY | 3 cut(s) | 507, 974, 1046 |
| BstSCI | CCNGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstV1I | GCAGC | 2 cut(s) | 560, 1489 |
| BstV2I | GAAGAC | 3 cut(s) | 27, 236, 1257 |
| BstX2I | RGATCY | 2 cut(s) | 1126, 1355 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 39 |
| BstYI | RGATCY | 2 cut(s) | 1126, 1355 |
| Bsu36I | CCTNAGG | 1 cut(s) | 951 |
| BsuRI | GGCC | 2 cut(s) | 669, 1390 |
| BtgZI | GCGATG | 1 cut(s) | 180 |
| BtrI | CACGTC | 1 cut(s) | 848 |
| BtsCI | GGATG | 5 cut(s) | 263, 282, 364, 487, 1336 |
| BtsIMutI | CAGTG | 8 cut(s) | 561, 822, 918, 1062, 1158, 1368, 1439, 1516 |
| BveI | ACCTGC | 2 cut(s) | 650, 1110 |
| Cac8I | GCNNGC | 3 cut(s) | 458, 1571, 1587 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1586 |
| CciI | TCATGA | 1 cut(s) | 474 |
| Cfr13I | GGNCC | 2 cut(s) | 7, 42 |
| Csp6I | GTAC | 5 cut(s) | 313, 837, 881, 888, 1632 |
| CviAII | CATG | 9 cut(s) | 416, 475, 504, 710, 971, 1043, 1131, 1310, 1398 |
| CviQI | GTAC | 5 cut(s) | 313, 837, 881, 888, 1632 |
| DdeI | CTNAG | 3 cut(s) | 552, 951, 1484 |
| DraI | TTTAAA | 1 cut(s) | 706 |
| EaeI | YGGCCR | 1 cut(s) | 1388 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 2 cut(s) | 123, 1501 |
| Eco24I | GRGCYC | 1 cut(s) | 702 |
| Eco47I | GGWCC | 2 cut(s) | 7, 42 |
| Eco57I | CTGAAG | 3 cut(s) | 891, 915, 1188 |
| Eco81I | CCTNAGG | 1 cut(s) | 951 |
| Eco88I | CYCGRG | 1 cut(s) | 840 |
| EcoRII | CCWGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| EcoT14I | CCWWGG | 2 cut(s) | 123, 1501 |
| EcoT22I | ATGCAT | 2 cut(s) | 1136, 1403 |
| EcoT38I | GRGCYC | 1 cut(s) | 702 |
| ErhI | CCWWGG | 2 cut(s) | 123, 1501 |
| FaeI | CATG | 9 cut(s) | 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401 |
| FatI | CATG | 9 cut(s) | 415, 474, 503, 709, 970, 1042, 1130, 1309, 1397 |
| FbaI | TGATCA | 1 cut(s) | 544 |
| Fnu4HI | GCNGC | 3 cut(s) | 574, 1106, 1478 |
| FokI | GGATG | 5 cut(s) | 270, 289, 371, 494, 1343 |
| FriOI | GRGCYC | 1 cut(s) | 702 |
| Fsp4HI | GCNGC | 3 cut(s) | 574, 1106, 1478 |
| FspBI | CTAG | 5 cut(s) | 404, 453, 500, 794, 1538 |
| GluI | GCNGC | 3 cut(s) | 574, 1106, 1478 |
| GsaI | CCCAGC | 1 cut(s) | 1112 |
| GsuI | CTGGAG | 1 cut(s) | 819 |
| HaeIII | GGCC | 2 cut(s) | 669, 1390 |
| Hin1II | CATG | 9 cut(s) | 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401 |
| HinfI | GANTC | 4 cut(s) | 308, 364, 566, 1153 |
| HphI | GGTGA | 2 cut(s) | 1013, 1220 |
| Hpy166II | GTNNAC | 3 cut(s) | 107, 559, 1610 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 276, 544, 549, 604, 935, 1582 |
| Hpy8I | GTNNAC | 3 cut(s) | 107, 559, 1610 |
| Hpy99I | CGWCG | 2 cut(s) | 780, 852 |
| HpyAV | CCTTC | 7 cut(s) | 236, 349, 387, 472, 869, 890, 1070 |
| HpyCH4III | ACNGT | 4 cut(s) | 46, 71, 623, 1511 |
| HpyCH4IV | ACGT | 2 cut(s) | 730, 847 |
| HpyCH4V | TGCA | 8 cut(s) | 1046, 1134, 1139, 1145, 1401, 1433, 1589, 1604 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 394, 769, 967 |
| HpyF3I | CTNAG | 3 cut(s) | 552, 951, 1484 |
| HpySE526I | ACGT | 2 cut(s) | 730, 847 |
| Hsp92II | CATG | 9 cut(s) | 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401 |
| Ksp22I | TGATCA | 1 cut(s) | 544 |
| LmnI | GCTCC | 5 cut(s) | 33, 385, 604, 1185, 1285 |
| Lsp1109I | GCAGC | 2 cut(s) | 560, 1489 |
| MaeI | CTAG | 5 cut(s) | 404, 453, 500, 794, 1538 |
| MaeII | ACGT | 2 cut(s) | 730, 847 |
| MaeIII | GTNAC | 4 cut(s) | 853, 1001, 1208, 1511 |
| MbiI | CCGCTC | 1 cut(s) | 348 |
| MflI | RGATCY | 2 cut(s) | 1126, 1355 |
| MhlI | GDGCHC | 2 cut(s) | 702, 847 |
| MlsI | TGGCCA | 1 cut(s) | 1390 |
| MluNI | TGGCCA | 1 cut(s) | 1390 |
| MlyI | GAGTC | 2 cut(s) | 302, 1147 |
| MmeI | TCCRAC | 4 cut(s) | 20, 608, 958, 1303 |
| Mox20I | TGGCCA | 1 cut(s) | 1390 |
| Mph1103I | ATGCAT | 2 cut(s) | 1136, 1403 |
| MscI | TGGCCA | 1 cut(s) | 1390 |
| MseI | TTAA | 4 cut(s) | 495, 578, 705, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 465 |
| Msp20I | TGGCCA | 1 cut(s) | 1390 |
| MspA1I | CMGCKG | 1 cut(s) | 1108 |
| MspR9I | CCNGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| Mva1269I | GAATGC | 1 cut(s) | 1606 |
| MvaI | CCWGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 394, 769, 967 |
| NlaIII | CATG | 9 cut(s) | 419, 478, 507, 713, 974, 1046, 1134, 1313, 1401 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 387, 1281, 1357 |
| NmuCI | GTSAC | 3 cut(s) | 1001, 1208, 1511 |
| NsiI | ATGCAT | 2 cut(s) | 1136, 1403 |
| NspI | RCATGY | 3 cut(s) | 507, 974, 1046 |
| PaeR7I | CTCGAG | 1 cut(s) | 840 |
| PagI | TCATGA | 1 cut(s) | 474 |
| PaqCI | CACCTGC | 1 cut(s) | 650 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 847 |
| PctI | GAATGC | 1 cut(s) | 1606 |
| PfeI | GAWTC | 2 cut(s) | 364, 566 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 416 |
| PfoI | TCCNGGA | 1 cut(s) | 1181 |
| PkrI | GCNGC | 3 cut(s) | 575, 1107, 1479 |
| PleI | GAGTC | 2 cut(s) | 302, 1147 |
| PpsI | GAGTC | 2 cut(s) | 302, 1147 |
| Psp6I | CCWGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| PspFI | CCCAGC | 1 cut(s) | 1108 |
| PspGI | CCWGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 387, 1281, 1357 |
| PspPI | GGNCC | 2 cut(s) | 7, 42 |
| PspXI | VCTCGAGB | 1 cut(s) | 840 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1586 |
| PsuI | RGATCY | 2 cut(s) | 1126, 1355 |
| RsaI | GTAC | 5 cut(s) | 314, 838, 882, 889, 1633 |
| RsaNI | GTAC | 5 cut(s) | 313, 837, 881, 888, 1632 |
| RseI | CAYNNNNRTG | 1 cut(s) | 465 |
| SaqAI | TTAA | 4 cut(s) | 495, 578, 705, 861 |
| SatI | GCNGC | 3 cut(s) | 574, 1106, 1478 |
| Sau96I | GGNCC | 2 cut(s) | 7, 42 |
| ScaI | AGTACT | 1 cut(s) | 838 |
| SchI | GAGTC | 2 cut(s) | 302, 1147 |
| ScrFI | CCNGG | 8 cut(s) | 671, 689, 737, 942, 1086, 1183, 1284, 1597 |
| SduI | GDGCHC | 2 cut(s) | 702, 847 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| Sfr274I | CTCGAG | 1 cut(s) | 840 |
| SinI | GGWCC | 2 cut(s) | 7, 42 |
| SlaI | CTCGAG | 1 cut(s) | 840 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 465 |
| SmlI | CTYRAG | 2 cut(s) | 252, 840 |
| SmoI | CTYRAG | 2 cut(s) | 252, 840 |
| SsiI | CCGC | 2 cut(s) | 346, 1106 |
| SspMI | CTAG | 5 cut(s) | 404, 453, 500, 794, 1538 |
| StyD4I | CCNGG | 8 cut(s) | 669, 687, 735, 940, 1084, 1181, 1282, 1595 |
| StyI | CCWWGG | 2 cut(s) | 123, 1501 |
| TaaI | ACNGT | 4 cut(s) | 46, 71, 623, 1511 |
| TaiI | ACGT | 2 cut(s) | 733, 850 |
| TaqI | TCGA | 2 cut(s) | 841, 850 |
| TatI | WGTACW | 3 cut(s) | 836, 880, 887 |
| TauI | GCSGC | 1 cut(s) | 1108 |
| TfiI | GAWTC | 2 cut(s) | 364, 566 |
| Tru1I | TTAA | 4 cut(s) | 495, 578, 705, 861 |
| Tru9I | TTAA | 4 cut(s) | 495, 578, 705, 861 |
| TscAI | CASTG | 8 cut(s) | 568, 822, 925, 1069, 1165, 1368, 1446, 1516 |
| TseFI | GTSAC | 3 cut(s) | 1001, 1208, 1511 |
| TseI | GCWGC | 2 cut(s) | 573, 1477 |
| Tsp45I | GTSAC | 3 cut(s) | 1001, 1208, 1511 |
| TspDTI | ATGAA | 6 cut(s) | 183, 368, 456, 491, 726, 1007 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| TspRI | CASTG | 8 cut(s) | 568, 822, 925, 1069, 1165, 1368, 1446, 1516 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 416 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 42 |
| XapI | RAATTY | 4 cut(s) | 113, 270, 641, 1406 |
| XbaI | TCTAGA | 2 cut(s) | 403, 1537 |
| XceI | RCATGY | 3 cut(s) | 507, 974, 1046 |
| XhoI | CTCGAG | 1 cut(s) | 840 |
| XspI | CTAG | 5 cut(s) | 404, 453, 500, 794, 1538 |
| ZrmI | AGTACT | 1 cut(s) | 838 |
| Zsp2I | ATGCAT | 2 cut(s) | 1136, 1403 |