Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003930

Physical Location & Seq

Genomic Coordinates Reverse (-)

65955658 .. 65958278

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG391300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAGGAGAAATCGCAGGACCCAACTGGTTTGGCCGGGGAGGGCAAAGCTAGAAATGACGGCAGAAGAGACGAGAAATTAGAAGTGGGTAGAGCGAGTGGACAGGTTAGATACAAACGAAGCTCGAACTTGAATGAGATAATGAAAGATGGACAGCTACTTGATAGTGACAGTAATGGAGCAGCAAGTGCGTCCCTTACTGAACATGCTCCTGAATCAAGCAGCTTAAATCTGCCAGAAGCCAAAGGTTCAAAGCAAAAAGTACAGGATGGTCATTCTACCAAAACCAAATGCATTTCTGTTCTTGCAGGTCAAGGCACTCAAGATGAACAGTCTCCAGGAGGTGGGAATGCAAAACATGAAAGTGAAAAGATCCAGCGGCTATCCAAATCCAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCTAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAAGCAAGCACTCGAGCACGTCGAGTTGGCAGCAAACAGTCGGATAATTCGGCTGGTTGTACATTCCAACAGCCAGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCGTGATAAGGCTGAAGAGAAGCCTGGAGTTCCTCCGGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCATTTGCAATAAAGACTCTAAAGGATCATTCAGGGAACGGAGAAACAGATATGAGCTATGAGAAGCAGGAATGCAATGTATTTCCGCCTCCAGGCAACTTGGTTAAACAAGAAAAACATGATGGCATGGTTGGAACTGGTGAGAAGTCGGGATCATCCATTACTGAACCGCCTTTCGGGAGTTCATGGCCGGACCCCTGCATTGAATTTGCTATAAAGACTCTCACCGGTGCAATCCCACTCGAGTATGACCCGCATATCGAGGAGTACTTCCAGAAGCAACTTGGTTCATCACAACAACACGAGGACAATCTTTTGCAAAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

331

Amino Acids

36.01

Weight (kDa)

5.91

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52230 AT5G52230 AT5G52230
fragaria_vesca	FvH4_7g29290 FvH4_7g29290
malus_domestica	MD01G1199300.v1.1 MD07G1267200.v1.1
prunus_persica	Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1
pyrus_communis	pycom01g20920 pycom07g24480
rosa_chinensis	RchiOBHm_Chr1g0377031
rosa_laevigata	RLG00000026548
rosa_multiflora	Rmu_ssc0000155.1_g000022
rosa_roxburghii	Rroxscaffold_4G00281510
rosa_rugosa	Rorug01G0401000 Rorug01G0401100
rosa_samantha	Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000
rosa_wichuraiana	Rw1G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	4 cut(s)	379, 746, 830, 914
AclWI	GGATC	4 cut(s)	367, 644, 693, 820
AcoI	YGGCCR	2 cut(s)	33, 848
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	264, 535, 929
AfiI	CCNNNNNNNGG	3 cut(s)	344, 752, 836
AgeI	ACCGGT	1 cut(s)	887
AgsI	TTSAA	4 cut(s)	133, 252, 452, 866
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	3 cut(s)	337, 607, 751
AluBI	AGCT	6 cut(s)	50, 123, 157, 225, 443, 717
AluI	AGCT	6 cut(s)	50, 123, 157, 225, 443, 717
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	63, 339
AlwI	GGATC	4 cut(s)	367, 644, 693, 820
Ama87I	CYCGRG	2 cut(s)	486, 902
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	2 cut(s)	33, 848
ApeKI	GCWGC	3 cut(s)	182, 222, 504
ApoI	RAATTY	1 cut(s)	866
AsiGI	ACCGGT	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	19, 853
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	812, 877
AvaI	CYCGRG	2 cut(s)	486, 902
AvaII	GGWCC	2 cut(s)	19, 853
BauI	CACGAG	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	194, 234, 516
BccI	CCATC	3 cut(s)	143, 263, 776
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	339, 609, 753
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	63, 339
BfaI	CTAG	2 cut(s)	51, 440
BfuAI	ACCTGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	183, 223, 380, 505
BlsI	GCNGC	4 cut(s)	184, 224, 381, 506
BmcAI	AGTACT	1 cut(s)	929
Bme1390I	CCNGG	4 cut(s)	37, 339, 609, 753
Bme18I	GGWCC	2 cut(s)	19, 853
BmeT110I	CYCGRG	2 cut(s)	486, 902
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	19, 853
BmiI	GGNNCC	2 cut(s)	21, 855
BmrFI	CCNGG	4 cut(s)	37, 339, 609, 753
BpmI	CTGGAG	3 cut(s)	321, 630, 735
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	2 cut(s)	619, 887
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 752, 836
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	2 cut(s)	31, 802
Bse3DI	GCAATG	2 cut(s)	657, 742
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	3 cut(s)	339, 609, 753
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	274, 815
BseLI	CCNNNNNNNGG	3 cut(s)	344, 752, 836
BseMI	GCAATG	2 cut(s)	657, 742
BseNI	ACTGG	2 cut(s)	31, 802
BseRI	GAGGAG	1 cut(s)	938
BseXI	GCAGC	3 cut(s)	194, 234, 516
BshFI	GGCC	2 cut(s)	35, 850
BshTI	ACCGGT	1 cut(s)	887
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	2 cut(s)	486, 902
BsiSI	CCGG	4 cut(s)	36, 620, 851, 888
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	344, 752, 836
BsmAI	GTCTC	2 cut(s)	63, 339
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	2 cut(s)	355, 737
BsnI	GGCC	2 cut(s)	35, 850
BsoBI	CYCGRG	2 cut(s)	486, 902
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp13I	TCCGGA	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	5 cut(s)	372, 406, 649, 685, 812
BspACI	CCGC	4 cut(s)	379, 746, 830, 914
BspANI	GGCC	2 cut(s)	35, 850
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	21, 855
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	4 cut(s)	367, 644, 693, 820
BspQI	GCTCTTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	657, 742
BsrFI	RCCGGY	1 cut(s)	887
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	31, 802
BssAI	RCCGGY	1 cut(s)	887
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	372, 406, 649, 685, 812
BssSI	CACGAG	1 cut(s)	962
Bst2BI	CACGAG	1 cut(s)	962
Bst2UI	CCWGG	3 cut(s)	339, 609, 753
Bst4CI	ACNGT	4 cut(s)	173, 333, 463, 513
Bst6I	CTCTTC	3 cut(s)	61, 576, 594
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	274, 815
BstKTI	GATC	5 cut(s)	375, 409, 652, 688, 815
BstMAI	GTCTC	2 cut(s)	63, 339
BstMBI	GATC	5 cut(s)	372, 406, 649, 685, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 553
BstNI	CCWGG	3 cut(s)	339, 609, 753
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	35, 337, 607, 751
BstV1I	GCAGC	3 cut(s)	194, 234, 516
BstX2I	RGATCY	3 cut(s)	372, 406, 649
BstYI	RGATCY	3 cut(s)	372, 406, 649
BsuRI	GGCC	2 cut(s)	35, 850
BtrI	CACGTC	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	274, 815
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	19, 853
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	263, 534, 928
CspAI	ACCGGT	1 cut(s)	887
CviAII	CATG	6 cut(s)	206, 359, 654, 779, 787, 846
CviQI	GTAC	3 cut(s)	263, 534, 928
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	5 cut(s)	374, 408, 651, 687, 814
DpnII	GATC	5 cut(s)	372, 406, 649, 685, 812
EaeI	YGGCCR	2 cut(s)	33, 848
Eam1104I	CTCTTC	3 cut(s)	61, 576, 594
EarI	CTCTTC	3 cut(s)	61, 576, 594
EciI	GGCGGA	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	19, 853
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	2 cut(s)	486, 902
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	337, 607, 751
EcoT22I	ATGCAT	2 cut(s)	296, 659
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	6 cut(s)	209, 362, 657, 782, 790, 849
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	6 cut(s)	205, 358, 653, 778, 786, 845
FauI	CCCGC	1 cut(s)	921
Fnu4HI	GCNGC	4 cut(s)	183, 223, 380, 505
FokI	GGATG	2 cut(s)	281, 802
Fsp4HI	GCNGC	4 cut(s)	183, 223, 380, 505
FspBI	CTAG	2 cut(s)	51, 440
GluI	GCNGC	4 cut(s)	183, 223, 380, 505
GsuI	CTGGAG	3 cut(s)	321, 630, 735
HaeIII	GGCC	2 cut(s)	35, 850
HapII	CCGG	4 cut(s)	36, 620, 851, 888
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	6 cut(s)	209, 362, 657, 782, 790, 849
HinfI	GANTC	4 cut(s)	215, 623, 676, 880
HpaII	CCGG	4 cut(s)	36, 620, 851, 888
HphI	GGTGA	2 cut(s)	812, 877
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	7 cut(s)	212, 323, 578, 620, 810, 838, 934
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	426, 498
HpyCH4III	ACNGT	4 cut(s)	173, 333, 463, 513
HpyCH4IV	ACGT	1 cut(s)	493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 553
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	6 cut(s)	209, 362, 657, 782, 790, 849
Kpn2I	TCCGGA	1 cut(s)	619
Kzo9I	GATC	5 cut(s)	372, 406, 649, 685, 812
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	2 cut(s)	179, 214
Lsp1109I	GCAGC	3 cut(s)	194, 234, 516
MaeI	CTAG	2 cut(s)	51, 440
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	374, 408, 651, 687, 814
MboI	GATC	5 cut(s)	372, 406, 649, 685, 812
MboII	GAAGA	6 cut(s)	78, 409, 412, 593, 611, 634
MflI	RGATCY	3 cut(s)	372, 406, 649
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	3 cut(s)	77, 520, 866
MlyI	GAGTC	2 cut(s)	670, 874
MmeI	TCCRAC	3 cut(s)	495, 565, 772
MnlI	CCTC	8 cut(s)	34, 335, 429, 627, 639, 759, 916, 958
Mph1103I	ATGCAT	2 cut(s)	296, 659
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	3 cut(s)	227, 411, 765
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	4 cut(s)	36, 620, 851, 888
MspR9I	CCNGG	4 cut(s)	37, 339, 609, 753
Mva1269I	GAATGC	2 cut(s)	355, 737
MvaI	CCWGG	3 cut(s)	339, 609, 753
MwoI	GCNNNNNNNGC	2 cut(s)	188, 553
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	5 cut(s)	372, 406, 649, 685, 812
NlaIII	CATG	6 cut(s)	209, 362, 657, 782, 790, 849
NlaIV	GGNNCC	2 cut(s)	21, 855
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	296, 659
NspI	RCATGY	1 cut(s)	209
PaeR7I	CTCGAG	2 cut(s)	486, 902
PciSI	GCTCTTC	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	2 cut(s)	355, 737
PfeI	GAWTC	2 cut(s)	215, 623
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	887
PkrI	GCNGC	4 cut(s)	184, 224, 381, 506
PleI	GAGTC	2 cut(s)	670, 874
PpsI	GAGTC	2 cut(s)	670, 874
PpuMI	RGGWCCY	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	3 cut(s)	337, 607, 751
PspGI	CCWGG	3 cut(s)	337, 607, 751
PspN4I	GGNNCC	2 cut(s)	21, 855
PspPI	GGNCC	2 cut(s)	19, 853
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	486, 902
PsuI	RGATCY	3 cut(s)	372, 406, 649
RsaI	GTAC	3 cut(s)	264, 535, 929
RsaNI	GTAC	3 cut(s)	263, 534, 928
RseI	CAYNNNNRTG	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	227, 411, 765
SatI	GCNGC	4 cut(s)	183, 223, 380, 505
Sau3AI	GATC	5 cut(s)	372, 406, 649, 685, 812
Sau96I	GGNCC	2 cut(s)	19, 853
ScaI	AGTACT	1 cut(s)	929
SchI	GAGTC	2 cut(s)	670, 874
ScrFI	CCNGG	4 cut(s)	37, 339, 609, 753
SduI	GDGCHC	1 cut(s)	493
Sfr274I	CTCGAG	2 cut(s)	486, 902
SgrAI	CRCCGGYG	1 cut(s)	887
SinI	GGWCC	2 cut(s)	19, 853
SlaI	CTCGAG	2 cut(s)	486, 902
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	3 cut(s)	321, 486, 902
SmoI	CTYRAG	3 cut(s)	321, 486, 902
Sse9I	AATT	3 cut(s)	77, 520, 866
SsiI	CCGC	4 cut(s)	379, 746, 830, 914
SspMI	CTAG	2 cut(s)	51, 440
StyD4I	CCNGG	4 cut(s)	35, 337, 607, 751
TaaI	ACNGT	4 cut(s)	173, 333, 463, 513
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	5 cut(s)	125, 487, 496, 903, 921
TasI	AATT	3 cut(s)	77, 520, 866
TatI	WGTACW	3 cut(s)	262, 533, 927
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	215, 623
Tru1I	TTAA	3 cut(s)	227, 411, 765
Tru9I	TTAA	3 cut(s)	227, 411, 765
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	182, 222, 504
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	6 cut(s)	17, 158, 342, 375, 834, 939
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	19, 853
XapI	RAATTY	1 cut(s)	866
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	941
XhoI	CTCGAG	2 cut(s)	486, 902
XspI	CTAG	2 cut(s)	51, 440
ZrmI	AGTACT	1 cut(s)	929
Zsp2I	ATGCAT	2 cut(s)	296, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.