Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003930

Physical Location & Seq

Genomic Coordinates Forward (+)

3751408 .. 3753125

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGGAGAAAACGGAGGACCCAACTGGTTTGGCCGGGGAGGGCAAAGCTAGAAATGACGGCAGAAGAGACGAGAAGCAGAAATTAGAAGTGGGTAGAGCGAGTGAACAGGTTAGATACAAACGAAGCTCGAACTTGAATGAGATAATGAAAGATGGACAGCTACTTAATAGTGACAGTAATGGAGCAAGTGCGTCCCTTACCGAACATGCTCCTGGATCAAGCAGCTTAAATCTGCCAGAAGCCAAAGGTTCAAAGCAAAAAGTACAGGATGGTCACCCTACCAAAACCAAATGCATTTCTGTTCTTGCAGGTCAAGGCACTCAAGATGAACAGTCTCCAGGAGGTGGGAATGCAAAACATGAAAGTGAAAAGATCCAGCGGCTGTCCAAATCCAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCCAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAGGCAAGCACTCGAGCACGTCGAGTTGGCAGCAAACAGTCGGATAATTCGGCTGGTTGTACATTCCAACAGCCAGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCGTGATAAGGCTGAAGAGAAGCCTGGAGTTCCTCTGGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCATTTGCAATAAAGACTCTAAAGGATCATTCGGGGAACGTAGAAGCAGACAATATGAGCTATGAGAAGCAGGATTGCAATGTATTTCCGCCTCCAGGCAACTTAGTTAAACAAGAAAAACATGATAGCATAGTTGGAACTGGTGAGAAGTCGGGATCATCCATTACTGAACCGCCTTTCGGGAGTTCATGGCCGGACCCCTGCATTGAATTTGCTATAAAGACTCTCACAGGTGCAATCCCACTCGAGTATGACCCGCATATCGAGGAGTACTTCCAGAAGCAACTTAGTTCATCACAACAACACAAGGACAATCTTTTGCAGAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

334

Amino Acids

36.38

Weight (kDa)

6.43

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52230 AT5G52230 AT5G52230
fragaria_vesca	FvH4_7g29290 FvH4_7g29290
malus_domestica	MD01G1199300.v1.1 MD07G1267200.v1.1
prunus_persica	Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1
pyrus_communis	pycom01g20920 pycom07g24480
rosa_chinensis	RchiOBHm_Chr1g0377031
rosa_laevigata	RLG00000026548
rosa_multiflora	Rmu_ssc0000155.1_g000022
rosa_roxburghii	Rroxscaffold_4G00281510
rosa_rugosa	Rorug01G0401000 Rorug01G0401100
rosa_samantha	Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000
rosa_wichuraiana	Rw1G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	4 cut(s)	382, 752, 836, 920
AclWI	GGATC	5 cut(s)	226, 370, 647, 696, 826
AcoI	YGGCCR	2 cut(s)	33, 854
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	2 cut(s)	497, 621
AfaI	GTAC	3 cut(s)	267, 538, 935
AfiI	CCNNNNNNNGG	3 cut(s)	347, 758, 842
AgsI	TTSAA	4 cut(s)	139, 255, 455, 872
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	4 cut(s)	214, 340, 610, 757
AluBI	AGCT	6 cut(s)	50, 129, 163, 228, 446, 723
AluI	AGCT	6 cut(s)	50, 129, 163, 228, 446, 723
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	2 cut(s)	63, 342
AlwI	GGATC	5 cut(s)	226, 370, 647, 696, 826
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	2 cut(s)	489, 908
AoxI	GGCC	2 cut(s)	33, 854
ApeKI	GCWGC	2 cut(s)	225, 507
ApoI	RAATTY	1 cut(s)	872
AspS9I	GGNCC	2 cut(s)	19, 859
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	269, 818
AvaI	CYCGRG	2 cut(s)	489, 908
AvaII	GGWCC	2 cut(s)	19, 859
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	237, 519
BccI	CCATC	2 cut(s)	149, 266
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	4 cut(s)	216, 342, 612, 759
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	63, 342
BfaI	CTAG	2 cut(s)	51, 443
BfuAI	ACCTGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	3 cut(s)	226, 383, 508
BlsI	GCNGC	3 cut(s)	227, 384, 509
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	5 cut(s)	37, 216, 342, 612, 759
Bme18I	GGWCC	2 cut(s)	19, 859
BmeT110I	CYCGRG	2 cut(s)	489, 908
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	19, 859
BmiI	GGNNCC	2 cut(s)	21, 861
BmrFI	CCNGG	5 cut(s)	37, 216, 342, 612, 759
BpmI	CTGGAG	3 cut(s)	324, 633, 741
BpuEI	CTTGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 758, 842
Bse1I	ACTGG	2 cut(s)	31, 808
Bse3DI	GCAATG	2 cut(s)	660, 748
BseBI	CCWGG	4 cut(s)	216, 342, 612, 759
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	277, 821
BseLI	CCNNNNNNNGG	3 cut(s)	347, 758, 842
BseMI	GCAATG	2 cut(s)	660, 748
BseNI	ACTGG	2 cut(s)	31, 808
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	2 cut(s)	237, 519
BshFI	GGCC	2 cut(s)	35, 856
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	2 cut(s)	489, 908
BsiSI	CCGG	2 cut(s)	36, 857
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	347, 758, 842
BsmAI	GTCTC	2 cut(s)	63, 342
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	35, 856
BsoBI	CYCGRG	2 cut(s)	489, 908
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
BspACI	CCGC	4 cut(s)	382, 752, 836, 920
BspANI	GGCC	2 cut(s)	35, 856
BspLI	GGNNCC	2 cut(s)	21, 861
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	5 cut(s)	226, 370, 647, 696, 826
BspQI	GCTCTTC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	660, 748
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	31, 808
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
Bst2UI	CCWGG	4 cut(s)	216, 342, 612, 759
Bst4CI	ACNGT	4 cut(s)	179, 336, 466, 516
Bst6I	CTCTTC	3 cut(s)	61, 579, 597
BstAUI	TGTACA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	766, 950
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	277, 821
BstKTI	GATC	6 cut(s)	221, 378, 412, 655, 691, 821
BstMAI	GTCTC	2 cut(s)	63, 342
BstMBI	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstNI	CCWGG	4 cut(s)	216, 342, 612, 759
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	5 cut(s)	35, 214, 340, 610, 757
BstV1I	GCAGC	2 cut(s)	237, 519
BstX2I	RGATCY	3 cut(s)	375, 409, 652
BstYI	RGATCY	3 cut(s)	375, 409, 652
BsuRI	GGCC	2 cut(s)	35, 856
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	277, 821
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	19, 859
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	266, 537, 934
CviAII	CATG	5 cut(s)	209, 362, 657, 785, 852
CviQI	GTAC	3 cut(s)	266, 537, 934
DdeI	CTNAG	2 cut(s)	766, 950
DpnI	GATC	6 cut(s)	220, 377, 411, 654, 690, 820
DpnII	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
EaeI	YGGCCR	2 cut(s)	33, 854
Eam1104I	CTCTTC	3 cut(s)	61, 579, 597
EarI	CTCTTC	3 cut(s)	61, 579, 597
EciI	GGCGGA	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	19, 859
Eco57I	CTGAAG	2 cut(s)	497, 621
Eco88I	CYCGRG	2 cut(s)	489, 908
Eco91I	GGTNACC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	4 cut(s)	214, 340, 610, 757
EcoT22I	ATGCAT	2 cut(s)	299, 662
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	5 cut(s)	212, 365, 660, 788, 855
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	5 cut(s)	208, 361, 656, 784, 851
FauI	CCCGC	1 cut(s)	927
Fnu4HI	GCNGC	3 cut(s)	226, 383, 508
FokI	GGATG	2 cut(s)	284, 808
Fsp4HI	GCNGC	3 cut(s)	226, 383, 508
FspBI	CTAG	2 cut(s)	51, 443
GluI	GCNGC	3 cut(s)	226, 383, 508
GsuI	CTGGAG	3 cut(s)	324, 633, 741
HaeIII	GGCC	2 cut(s)	35, 856
HapII	CCGG	2 cut(s)	36, 857
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	212, 365, 660, 788, 855
HinfI	GANTC	3 cut(s)	626, 679, 886
HpaII	CCGG	2 cut(s)	36, 857
HphI	GGTGA	2 cut(s)	269, 818
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	6 cut(s)	326, 581, 623, 816, 844, 940
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	2 cut(s)	429, 501
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	4 cut(s)	179, 336, 466, 516
HpyCH4IV	ACGT	2 cut(s)	496, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	2 cut(s)	766, 950
HpySE526I	ACGT	2 cut(s)	496, 702
Hsp92II	CATG	5 cut(s)	212, 365, 660, 788, 855
Kzo9I	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	185, 217
Lsp1109I	GCAGC	2 cut(s)	237, 519
MaeI	CTAG	2 cut(s)	51, 443
MaeII	ACGT	2 cut(s)	496, 702
MaeIII	GTNAC	2 cut(s)	173, 275
MalI	GATC	6 cut(s)	220, 377, 411, 654, 690, 820
MboI	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
MboII	GAAGA	6 cut(s)	78, 412, 415, 596, 614, 637
MflI	RGATCY	3 cut(s)	375, 409, 652
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	83, 523, 872
MlyI	GAGTC	2 cut(s)	673, 880
MmeI	TCCRAC	3 cut(s)	498, 568, 778
MnlI	CCTC	8 cut(s)	10, 34, 338, 432, 630, 642, 765, 922
Mph1103I	ATGCAT	2 cut(s)	299, 662
MseI	TTAA	4 cut(s)	168, 230, 414, 771
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	36, 857
MspR9I	CCNGG	5 cut(s)	37, 216, 342, 612, 759
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	4 cut(s)	216, 342, 612, 759
MwoI	GCNNNNNNNGC	1 cut(s)	556
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
NlaIII	CATG	5 cut(s)	212, 365, 660, 788, 855
NlaIV	GGNNCC	2 cut(s)	21, 861
NmuCI	GTSAC	2 cut(s)	173, 275
NsiI	ATGCAT	2 cut(s)	299, 662
NspI	RCATGY	1 cut(s)	212
PaeR7I	CTCGAG	2 cut(s)	489, 908
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	347
PfoI	TCCNGGA	2 cut(s)	214, 340
PkrI	GCNGC	3 cut(s)	227, 384, 509
PleI	GAGTC	2 cut(s)	673, 880
PpsI	GAGTC	2 cut(s)	673, 880
PpuMI	RGGWCCY	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	4 cut(s)	214, 340, 610, 757
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	4 cut(s)	214, 340, 610, 757
PspN4I	GGNNCC	2 cut(s)	21, 861
PspPI	GGNCC	2 cut(s)	19, 859
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	489, 908
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	375, 409, 652
RsaI	GTAC	3 cut(s)	267, 538, 935
RsaNI	GTAC	3 cut(s)	266, 537, 934
RseI	CAYNNNNRTG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	168, 230, 414, 771
SatI	GCNGC	3 cut(s)	226, 383, 508
Sau3AI	GATC	6 cut(s)	218, 375, 409, 652, 688, 818
Sau96I	GGNCC	2 cut(s)	19, 859
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	673, 880
ScrFI	CCNGG	5 cut(s)	37, 216, 342, 612, 759
SduI	GDGCHC	1 cut(s)	496
Sfr274I	CTCGAG	2 cut(s)	489, 908
SinI	GGWCC	2 cut(s)	19, 859
SlaI	CTCGAG	2 cut(s)	489, 908
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	324, 489, 908
SmoI	CTYRAG	3 cut(s)	324, 489, 908
Sse9I	AATT	3 cut(s)	83, 523, 872
SsiI	CCGC	4 cut(s)	382, 752, 836, 920
SspMI	CTAG	2 cut(s)	51, 443
StyD4I	CCNGG	5 cut(s)	35, 214, 340, 610, 757
TaaI	ACNGT	4 cut(s)	179, 336, 466, 516
TaiI	ACGT	2 cut(s)	499, 705
TaqI	TCGA	5 cut(s)	131, 490, 499, 909, 927
TasI	AATT	3 cut(s)	83, 523, 872
TatI	WGTACW	3 cut(s)	265, 536, 933
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	4 cut(s)	168, 230, 414, 771
Tru9I	TTAA	4 cut(s)	168, 230, 414, 771
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	173, 275
TseI	GCWGC	2 cut(s)	225, 507
Tsp45I	GTSAC	2 cut(s)	173, 275
TspDTI	ATGAA	6 cut(s)	17, 164, 345, 378, 840, 945
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	19, 859
XapI	RAATTY	1 cut(s)	872
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	2 cut(s)	489, 908
XspI	CTAG	2 cut(s)	51, 443
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	2 cut(s)	299, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.