Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003930

Physical Location & Seq

Genomic Coordinates Reverse (-)

21585197 .. 21588180

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGGGAGCGGAAATCGGAGGACCCAGCTGGGTTGGCCGTGGAGGGCAGAGCTAGAAATGACGAGAACTTAGAAGTGGGTAGAACAAGCGGACAGGTTAGACACAAACGAAGCTCGAACCTGAATGAGCTGATGAAAGATGAACAGCTACTTGATAGTGAAAGTAATGGAGCAAGTGCGTCCCTTACTGAACATGCTCCGGAATCAAGCAGCTTAAATCTGCTAGGAGGCAAAGGTTCAAAGCAAACAGTACAGGATGGTCATTTTACCAAAACCAGAAGCATTTCTGCTCTTGCAGGTCAAGGCACTCAAGATAAACAATCTCCAGGAAGTGGGAATGCAAAACATGAAAGTGAACAGCGGCTGTCCAAATCTAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCTAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAACCAACCACTCGAGCACGTCGAGTTGTCAGCAAACAGTCAGATAATTCAGCTGCTTGTTCATTCCAACAGCAGGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCATGCTAAGACTGAAGAGAACCCTGGAGTTACCCCAGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCCTTTGCAATAAAGACTCTAAAGGATCATTCTGGCGATGGAGAATCAGACAATATGAGCTATGAAAAGCAAGAATGCAATGTTCTTCCACCTCCAGACAACTTGGTCAAACAAGAGAAACATGATGGCATAGTTGGAACTGGTGAGAAGTCAGGATCATCCATCACTGAACCACCTTTCGGGAGTTCATGGCCAGACCCCTGCATTGAATTTGCTATAAAGACTCTCACAGGTGCAATCCCACTCGAGTATGACCCACATATCGAGGAATTCTTCCAGAAGCAACTTAGTTCATCACAACAACACAAGGACAACCTCTTGCAGAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

327

Amino Acids

35.68

Weight (kDa)

5.69

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52230 AT5G52230 AT5G52230
fragaria_vesca	FvH4_7g29290 FvH4_7g29290
malus_domestica	MD01G1199300.v1.1 MD07G1267200.v1.1
prunus_persica	Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1
pyrus_communis	pycom01g20920 pycom07g24480
rosa_chinensis	RchiOBHm_Chr1g0377031
rosa_laevigata	RLG00000026548
rosa_multiflora	Rmu_ssc0000155.1_g000022
rosa_roxburghii	Rroxscaffold_4G00281510
rosa_rugosa	Rorug01G0401000 Rorug01G0401100
rosa_samantha	Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000
rosa_wichuraiana	Rw1G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	10
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	3 cut(s)	10, 90, 361
AclWI	GGATC	3 cut(s)	626, 675, 805
AcoI	YGGCCR	2 cut(s)	36, 833
AcsI	RAATTY	2 cut(s)	851, 911
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	332, 529, 821
AgsI	TTSAA	3 cut(s)	240, 434, 851
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	325, 589
AluBI	AGCT	9 cut(s)	29, 53, 114, 130, 148, 213, 425, 509, 702
AluI	AGCT	9 cut(s)	29, 53, 114, 130, 148, 213, 425, 509, 702
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	3 cut(s)	626, 675, 805
AlwNI	CAGNNNCTG	1 cut(s)	364
Ama87I	CYCGRG	2 cut(s)	468, 887
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	36, 833
ApeKI	GCWGC	2 cut(s)	210, 509
ApoI	RAATTY	2 cut(s)	851, 911
Asp700I	GAANNNNTTC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	797
AvaI	CYCGRG	2 cut(s)	468, 887
AvaII	GGWCC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	222, 496
BccI	CCATC	4 cut(s)	251, 674, 761, 812
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	327, 591
BfaI	CTAG	3 cut(s)	54, 224, 422
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	211, 362, 510
BlsI	GCNGC	3 cut(s)	212, 363, 511
Bme1390I	CCNGG	2 cut(s)	327, 591
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	2 cut(s)	468, 887
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	327, 591
BpmI	CTGGAG	3 cut(s)	309, 612, 720
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	39, 589
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 529, 821
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	2 cut(s)	639, 727
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	327, 591
BseDI	CCNNGG	2 cut(s)	39, 589
BseGI	GGATG	2 cut(s)	262, 800
BseLI	CCNNNNNNNGG	3 cut(s)	332, 529, 821
BseMI	GCAATG	2 cut(s)	639, 727
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	222, 496
BseYI	CCCAGC	2 cut(s)	25, 29
BshFI	GGCC	2 cut(s)	38, 835
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	2 cut(s)	468, 887
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	332, 529, 821
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	343, 722
BsnI	GGCC	2 cut(s)	38, 835
BsoBI	CYCGRG	2 cut(s)	468, 887
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	388, 631, 667, 797
BspACI	CCGC	3 cut(s)	10, 90, 361
BspANI	GGCC	2 cut(s)	38, 835
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	3 cut(s)	626, 675, 805
BspQI	GCTCTTC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	639, 727
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	2 cut(s)	39, 589
BssMI	GATC	4 cut(s)	388, 631, 667, 797
Bst2UI	CCWGG	2 cut(s)	327, 591
Bst4CI	ACNGT	3 cut(s)	250, 445, 495
Bst6I	CTCTTC	2 cut(s)	558, 576
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	5 cut(s)	70, 375, 414, 573, 929
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	262, 800
BstKTI	GATC	4 cut(s)	391, 634, 670, 800
BstMBI	GATC	4 cut(s)	388, 631, 667, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 535
BstNI	CCWGG	2 cut(s)	327, 591
BstNSI	RCATGY	2 cut(s)	197, 572
BstSCI	CCNGG	2 cut(s)	325, 589
BstV1I	GCAGC	2 cut(s)	222, 496
BstX2I	RGATCY	2 cut(s)	388, 631
BstYI	RGATCY	2 cut(s)	388, 631
BsuRI	GGCC	2 cut(s)	38, 835
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	262, 800
BtsIMutI	CAGTG	2 cut(s)	450, 807
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	6 cut(s)	194, 347, 569, 636, 764, 831
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	5 cut(s)	70, 375, 414, 573, 929
DpnI	GATC	4 cut(s)	390, 633, 669, 799
DpnII	GATC	4 cut(s)	388, 631, 667, 797
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
EaeI	YGGCCR	2 cut(s)	36, 833
Eam1104I	CTCTTC	2 cut(s)	558, 576
EarI	CTCTTC	2 cut(s)	558, 576
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	600
Eco88I	CYCGRG	2 cut(s)	468, 887
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	325, 589
EcoT22I	ATGCAT	1 cut(s)	641
FaeI	CATG	6 cut(s)	197, 350, 572, 639, 767, 834
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	6 cut(s)	193, 346, 568, 635, 763, 830
Fnu4HI	GCNGC	3 cut(s)	211, 362, 510
FokI	GGATG	2 cut(s)	269, 787
Fsp4HI	GCNGC	3 cut(s)	211, 362, 510
FspBI	CTAG	3 cut(s)	54, 224, 422
GluI	GCNGC	3 cut(s)	211, 362, 510
GsaI	CCCAGC	2 cut(s)	29, 33
GsuI	CTGGAG	3 cut(s)	309, 612, 720
HaeIII	GGCC	2 cut(s)	38, 835
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	197, 350, 572, 639, 767, 834
HinfI	GANTC	5 cut(s)	203, 605, 658, 686, 865
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	19, 499, 691
Hpy188III	TCNNGA	7 cut(s)	200, 311, 560, 737, 795, 823, 919
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	2 cut(s)	408, 480
HpyCH4III	ACNGT	3 cut(s)	250, 445, 495
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	8 cut(s)	296, 341, 639, 650, 720, 846, 878, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 535
HpyF3I	CTNAG	5 cut(s)	70, 375, 414, 573, 929
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	6 cut(s)	197, 350, 572, 639, 767, 834
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	388, 631, 667, 797
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	3 cut(s)	7, 170, 202
Lsp1109I	GCAGC	2 cut(s)	222, 496
MaeI	CTAG	3 cut(s)	54, 224, 422
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	390, 633, 669, 799
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	4 cut(s)	388, 631, 667, 797
MboII	GAAGA	7 cut(s)	391, 394, 575, 593, 616, 719, 907
MflI	RGATCY	2 cut(s)	388, 631
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	3 cut(s)	502, 851, 911
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	2 cut(s)	652, 859
MmeI	TCCRAC	2 cut(s)	547, 757
MnlI	CCTC	8 cut(s)	13, 37, 221, 411, 621, 744, 901, 968
Mox20I	TGGCCA	1 cut(s)	835
Mph1103I	ATGCAT	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	2 cut(s)	215, 393
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	835
MspA1I	CMGCKG	3 cut(s)	29, 361, 509
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	327, 591
Mva1269I	GAATGC	2 cut(s)	343, 722
MvaI	CCWGG	2 cut(s)	327, 591
MwoI	GCNNNNNNNGC	2 cut(s)	35, 535
NdeII	GATC	4 cut(s)	388, 631, 667, 797
NlaIII	CATG	6 cut(s)	197, 350, 572, 639, 767, 834
NlaIV	GGNNCC	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	641
NspI	RCATGY	2 cut(s)	197, 572
PaeI	GCATGC	1 cut(s)	572
PaeR7I	CTCGAG	2 cut(s)	468, 887
PciSI	GCTCTTC	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	2 cut(s)	343, 722
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	203, 605, 686
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	212, 363, 511
PleI	GAGTC	2 cut(s)	652, 859
PpsI	GAGTC	2 cut(s)	652, 859
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	325, 589
PspFI	CCCAGC	2 cut(s)	25, 29
PspGI	CCWGG	2 cut(s)	325, 589
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	22
PspPPI	RGGWCCY	1 cut(s)	22
PspXI	VCTCGAGB	2 cut(s)	468, 887
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	388, 631
PvuII	CAGCTG	2 cut(s)	29, 509
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	215, 393
SatI	GCNGC	3 cut(s)	211, 362, 510
Sau3AI	GATC	4 cut(s)	388, 631, 667, 797
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	2 cut(s)	652, 859
ScrFI	CCNGG	2 cut(s)	327, 591
SduI	GDGCHC	1 cut(s)	475
Sfr274I	CTCGAG	2 cut(s)	468, 887
SinI	GGWCC	1 cut(s)	22
SlaI	CTCGAG	2 cut(s)	468, 887
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	309, 468, 887
SmoI	CTYRAG	3 cut(s)	309, 468, 887
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	3 cut(s)	502, 851, 911
SsiI	CCGC	3 cut(s)	10, 90, 361
SspMI	CTAG	3 cut(s)	54, 224, 422
StyD4I	CCNGG	2 cut(s)	325, 589
TaaI	ACNGT	3 cut(s)	250, 445, 495
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	5 cut(s)	116, 469, 478, 888, 906
TasI	AATT	3 cut(s)	502, 851, 911
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	203, 605, 686
Tru1I	TTAA	2 cut(s)	215, 393
Tru9I	TTAA	2 cut(s)	215, 393
TscAI	CASTG	2 cut(s)	450, 814
TseI	GCWGC	2 cut(s)	210, 509
TspDTI	ATGAA	7 cut(s)	149, 156, 363, 507, 720, 819, 924
TspRI	CASTG	2 cut(s)	450, 814
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	851, 911
XceI	RCATGY	2 cut(s)	197, 572
XhoI	CTCGAG	2 cut(s)	468, 887
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	3 cut(s)	54, 224, 422
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.