Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003930

Physical Location & Seq

Genomic Coordinates Forward (+)

3788147 .. 3789972

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAAGGAGAAATCGCAGGACCCAACTGGTTTGGCCGGGGAGGGCAAAGCTAGAAATGACGGCAGAAGAGACGAGTGCGGTAGCTATGTTTACTTTTTCATTAATATCTTTTCTCTGTTTGAATTGTCTGATGTTACCAAGAAGCAGAACTTAGAAGTGGGTAGAGCGAGTGGACAAGTTAGATACAAACGAAGCTCGAACTTGAATGAGATAATGAAAGATGGACAGCTACTTGATAGTGACAGTAATGGAGCAAGTGCGTCCCTTGCTGAACATGCTCCTGAATCATGCAGCTTAAATCTGCCAGAAGCCAAAGGTTCAAAGCAAAAAGTACAGGATGGTCATTCTACCAAAACCAAATGCATTTCTGTTCTTGCAGGTCAAGGCACTCAAGATGAACAGTCTCCAGGAGGTGGGAATGCAAAACATGAAAGTGAAAAGATCCAGCGGCTGTCCAAATCCAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCTAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAAGCAAGCACTCGAGCACGTCGAGTTGGCAGCAAACAGTCGGATAATTCGGCTGGTTGTACATTCCAACAGCCAGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCATGATAAGGCTGAAGAGAAGCCTGGAGTTCCTCCGGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCATTTGCAATAAAGACTCTAAAGGATCATTCGGGGAACGGAGAAACAGATATGAGCTATGAGAAGCAGGAATGCAATGTATTTCCGCCCCCAGGCAACTTGGTTAAACAAGAAAAACATGATGGCATAGTTGGAACTGGTGAGAAGTCAGGATCATCCATTACTGAACCGCCTTTCGGGAGTTCATGGCCGGACCCCTGCATTGAATTTGCTATAAAGACTCTCACCGGTGCAATCCCACTCGAGTATGACCCGCATATTGAGGAGTACTTCCAGAAACAACTTAGTTCATCACAACAACACAAGGACAATCTTTTGCAGAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

354

Amino Acids

38.73

Weight (kDa)

5.98

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52230 AT5G52230 AT5G52230
fragaria_vesca	FvH4_7g29290 FvH4_7g29290
malus_domestica	MD01G1199300.v1.1 MD07G1267200.v1.1
prunus_persica	Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1
pyrus_communis	pycom01g20920 pycom07g24480
rosa_chinensis	RchiOBHm_Chr1g0377031
rosa_laevigata	RLG00000026548
rosa_multiflora	Rmu_ssc0000155.1_g000022
rosa_roxburghii	Rroxscaffold_4G00281510
rosa_rugosa	Rorug01G0401000 Rorug01G0401100
rosa_samantha	Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000
rosa_wichuraiana	Rw1G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	5 cut(s)	78, 448, 815, 899, 983
AclWI	GGATC	4 cut(s)	436, 713, 762, 889
AcoI	YGGCCR	2 cut(s)	33, 917
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	3 cut(s)	333, 604, 998
AfiI	CCNNNNNNNGG	3 cut(s)	413, 821, 905
AgeI	ACCGGT	1 cut(s)	956
AgsI	TTSAA	5 cut(s)	122, 205, 321, 521, 935
AjiI	CACGTC	1 cut(s)	563
AjnI	CCWGG	3 cut(s)	406, 676, 820
AluBI	AGCT	7 cut(s)	50, 84, 195, 229, 294, 512, 786
AluI	AGCT	7 cut(s)	50, 84, 195, 229, 294, 512, 786
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	2 cut(s)	63, 408
AlwI	GGATC	4 cut(s)	436, 713, 762, 889
AlwNI	CAGNNNCTG	1 cut(s)	451
Ama87I	CYCGRG	2 cut(s)	555, 971
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	2 cut(s)	33, 917
ApeKI	GCWGC	2 cut(s)	291, 573
ApoI	RAATTY	1 cut(s)	935
AseI	ATTAAT	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	19, 922
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	881, 946
AvaI	CYCGRG	2 cut(s)	555, 971
AvaII	GGWCC	2 cut(s)	19, 922
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	303, 585
BccI	CCATC	3 cut(s)	215, 332, 845
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	408, 678, 822
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	63, 408
BfaI	CTAG	2 cut(s)	51, 509
BfuAI	ACCTGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	3 cut(s)	292, 449, 574
BlsI	GCNGC	3 cut(s)	293, 450, 575
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	4 cut(s)	37, 408, 678, 822
Bme18I	GGWCC	2 cut(s)	19, 922
BmeT110I	CYCGRG	2 cut(s)	555, 971
BmgBI	CACGTC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	19, 922
BmiI	GGNNCC	2 cut(s)	21, 924
BmrFI	CCNGG	4 cut(s)	37, 408, 678, 822
BpmI	CTGGAG	2 cut(s)	390, 699
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	36, 820
BsaWI	WCCGGW	2 cut(s)	688, 956
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 821, 905
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	2 cut(s)	31, 871
Bse3DI	GCAATG	2 cut(s)	726, 811
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	3 cut(s)	408, 678, 822
BseDI	CCNNGG	2 cut(s)	36, 820
BseGI	GGATG	2 cut(s)	343, 884
BseLI	CCNNNNNNNGG	3 cut(s)	413, 821, 905
BseMI	GCAATG	2 cut(s)	726, 811
BseNI	ACTGG	2 cut(s)	31, 871
BseRI	GAGGAG	1 cut(s)	1007
BseXI	GCAGC	2 cut(s)	303, 585
BshFI	GGCC	2 cut(s)	35, 919
BshTI	ACCGGT	1 cut(s)	956
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	2 cut(s)	555, 971
BsiSI	CCGG	4 cut(s)	36, 689, 920, 957
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	413, 821, 905
BsmAI	GTCTC	2 cut(s)	63, 408
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	2 cut(s)	424, 806
BsnI	GGCC	2 cut(s)	35, 919
BsoBI	CYCGRG	2 cut(s)	555, 971
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	688
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	441, 475, 718, 754, 881
BspACI	CCGC	5 cut(s)	78, 448, 815, 899, 983
BspANI	GGCC	2 cut(s)	35, 919
BspEI	TCCGGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	21, 924
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	4 cut(s)	436, 713, 762, 889
BspQI	GCTCTTC	1 cut(s)	645
BsrDI	GCAATG	2 cut(s)	726, 811
BsrFI	RCCGGY	1 cut(s)	956
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	31, 871
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	2 cut(s)	36, 820
BssMI	GATC	5 cut(s)	441, 475, 718, 754, 881
Bst2UI	CCWGG	3 cut(s)	408, 678, 822
Bst4CI	ACNGT	4 cut(s)	245, 402, 532, 582
Bst6I	CTCTTC	3 cut(s)	61, 645, 663
BstAUI	TGTACA	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	151, 501, 1013
BstF5I	GGATG	2 cut(s)	343, 884
BstKTI	GATC	5 cut(s)	444, 478, 721, 757, 884
BstMAI	GTCTC	2 cut(s)	63, 408
BstMBI	GATC	5 cut(s)	441, 475, 718, 754, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 622
BstNI	CCWGG	3 cut(s)	408, 678, 822
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	35, 406, 676, 820
BstV1I	GCAGC	2 cut(s)	303, 585
BstX2I	RGATCY	3 cut(s)	441, 475, 718
BstYI	RGATCY	3 cut(s)	441, 475, 718
BsuRI	GGCC	2 cut(s)	35, 919
BtrI	CACGTC	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	343, 884
BtsIMutI	CAGTG	1 cut(s)	537
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	19, 922
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	332, 603, 997
CspAI	ACCGGT	1 cut(s)	956
CviAII	CATG	7 cut(s)	275, 288, 428, 656, 723, 848, 915
CviQI	GTAC	3 cut(s)	332, 603, 997
DdeI	CTNAG	3 cut(s)	151, 501, 1013
DpnI	GATC	5 cut(s)	443, 477, 720, 756, 883
DpnII	GATC	5 cut(s)	441, 475, 718, 754, 881
EaeI	YGGCCR	2 cut(s)	33, 917
Eam1104I	CTCTTC	3 cut(s)	61, 645, 663
EarI	CTCTTC	3 cut(s)	61, 645, 663
EciI	GGCGGA	1 cut(s)	804
Eco47I	GGWCC	2 cut(s)	19, 922
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	2 cut(s)	555, 971
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	406, 676, 820
EcoT22I	ATGCAT	2 cut(s)	365, 728
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	7 cut(s)	278, 291, 431, 659, 726, 851, 918
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	7 cut(s)	274, 287, 427, 655, 722, 847, 914
FauI	CCCGC	1 cut(s)	990
Fnu4HI	GCNGC	3 cut(s)	292, 449, 574
FokI	GGATG	2 cut(s)	350, 871
Fsp4HI	GCNGC	3 cut(s)	292, 449, 574
FspBI	CTAG	2 cut(s)	51, 509
GluI	GCNGC	3 cut(s)	292, 449, 574
GsuI	CTGGAG	2 cut(s)	390, 699
HaeIII	GGCC	2 cut(s)	35, 919
HapII	CCGG	4 cut(s)	36, 689, 920, 957
HgaI	GACGC	1 cut(s)	249
Hin1II	CATG	7 cut(s)	278, 291, 431, 659, 726, 851, 918
HinfI	GANTC	4 cut(s)	284, 692, 745, 949
HpaII	CCGG	4 cut(s)	36, 689, 920, 957
HphI	GGTGA	2 cut(s)	881, 946
Hpy166II	GTNNAC	2 cut(s)	91, 173
Hpy188I	TCNGA	2 cut(s)	130, 586
Hpy188III	TCNNGA	7 cut(s)	281, 392, 647, 689, 879, 907, 1003
Hpy8I	GTNNAC	2 cut(s)	91, 173
Hpy99I	CGWCG	2 cut(s)	495, 567
HpyCH4III	ACNGT	4 cut(s)	245, 402, 532, 582
HpyCH4IV	ACGT	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 622
HpyF3I	CTNAG	3 cut(s)	151, 501, 1013
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	7 cut(s)	278, 291, 431, 659, 726, 851, 918
Kpn2I	TCCGGA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	441, 475, 718, 754, 881
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	2 cut(s)	251, 283
Lsp1109I	GCAGC	2 cut(s)	303, 585
MaeI	CTAG	2 cut(s)	51, 509
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	2 cut(s)	133, 239
MalI	GATC	5 cut(s)	443, 477, 720, 756, 883
MboI	GATC	5 cut(s)	441, 475, 718, 754, 881
MboII	GAAGA	6 cut(s)	78, 478, 481, 662, 680, 703
MflI	RGATCY	3 cut(s)	441, 475, 718
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	3 cut(s)	122, 589, 935
MlyI	GAGTC	2 cut(s)	739, 943
MmeI	TCCRAC	3 cut(s)	564, 634, 841
MnlI	CCTC	6 cut(s)	34, 404, 498, 696, 708, 985
Mph1103I	ATGCAT	2 cut(s)	365, 728
MroI	TCCGGA	1 cut(s)	688
MseI	TTAA	4 cut(s)	102, 296, 480, 834
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	4 cut(s)	36, 689, 920, 957
MspR9I	CCNGG	4 cut(s)	37, 408, 678, 822
Mva1269I	GAATGC	2 cut(s)	424, 806
MvaI	CCWGG	3 cut(s)	408, 678, 822
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 622
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	5 cut(s)	441, 475, 718, 754, 881
NlaIII	CATG	7 cut(s)	278, 291, 431, 659, 726, 851, 918
NlaIV	GGNNCC	2 cut(s)	21, 924
NmuCI	GTSAC	1 cut(s)	239
NsiI	ATGCAT	2 cut(s)	365, 728
NspI	RCATGY	1 cut(s)	278
PaeR7I	CTCGAG	2 cut(s)	555, 971
PciSI	GCTCTTC	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	2 cut(s)	424, 806
PfeI	GAWTC	2 cut(s)	284, 692
PflMI	CCANNNNNTGG	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	406
PinAI	ACCGGT	1 cut(s)	956
PkrI	GCNGC	3 cut(s)	293, 450, 575
PleI	GAGTC	2 cut(s)	739, 943
PpsI	GAGTC	2 cut(s)	739, 943
PpuMI	RGGWCCY	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	3 cut(s)	406, 676, 820
PspGI	CCWGG	3 cut(s)	406, 676, 820
PspN4I	GGNNCC	2 cut(s)	21, 924
PspPI	GGNCC	2 cut(s)	19, 922
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	555, 971
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	441, 475, 718
RsaI	GTAC	3 cut(s)	333, 604, 998
RsaNI	GTAC	3 cut(s)	332, 603, 997
RseI	CAYNNNNRTG	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	102, 296, 480, 834
SatI	GCNGC	3 cut(s)	292, 449, 574
Sau3AI	GATC	5 cut(s)	441, 475, 718, 754, 881
Sau96I	GGNCC	2 cut(s)	19, 922
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	2 cut(s)	739, 943
ScrFI	CCNGG	4 cut(s)	37, 408, 678, 822
SduI	GDGCHC	1 cut(s)	562
Sfr274I	CTCGAG	2 cut(s)	555, 971
SgrAI	CRCCGGYG	1 cut(s)	956
SinI	GGWCC	2 cut(s)	19, 922
SlaI	CTCGAG	2 cut(s)	555, 971
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	390, 555, 971
SmoI	CTYRAG	3 cut(s)	390, 555, 971
Sse9I	AATT	3 cut(s)	122, 589, 935
SsiI	CCGC	5 cut(s)	78, 448, 815, 899, 983
SspMI	CTAG	2 cut(s)	51, 509
StyD4I	CCNGG	4 cut(s)	35, 406, 676, 820
TaaI	ACNGT	4 cut(s)	245, 402, 532, 582
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	197, 556, 565, 972
TasI	AATT	3 cut(s)	122, 589, 935
TatI	WGTACW	3 cut(s)	331, 602, 996
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	284, 692
Tru1I	TTAA	4 cut(s)	102, 296, 480, 834
Tru9I	TTAA	4 cut(s)	102, 296, 480, 834
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	291, 573
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	7 cut(s)	17, 88, 230, 411, 444, 903, 1008
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	19, 922
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	1 cut(s)	278
XhoI	CTCGAG	2 cut(s)	555, 971
XspI	CTAG	2 cut(s)	51, 509
ZrmI	AGTACT	1 cut(s)	998
Zsp2I	ATGCAT	2 cut(s)	365, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.