Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

21343102 .. 21344106

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAATGCAAAAGAGAAGAAGGGAAGTCTTACGTGAAGAGAGGGTTGTGGAAACCAGAAGAAGATATGATATTAAAAAGCTATGTTGAGACTCATGGTGAAGGAAACTGGGCAGACATTTCTCGTAGATCCGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGCTGAGATGGAAGAACTATCTAAGACCAAATATCAAAAGAGGAAGCATGTCACCACAAGAACAAGACCTTATCATCCGCATGCATAAGCTTCTTGGAAACAGATGGTCGTTGATCGCTGGTCGCCTTCCAGGTCGTACTGACAATGAAGTGAAGAACTACTGGAATACTCATTTGAACAAGAAACCTAATTCCCGAAGACAGAATGCACCTGAATCAATCGTCGGCGCCACTCCTTTCACGGATAAGCCAGTTATGTCTACAGAACTGAGAAGAAGCCATGGAGAAGGAGGAGAAGAGGAGAGCAATACCTGGATGGAGGAGACCAACCACTTTGGCTATGACGTCCACGTAGGATCTCCCTTGCCACTTATTTCCCACTACCCAGACAACACTCTCGTGTTTGACCCATGTTTTTCCTTTACCGATTTCTTTCCTCTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

201

Amino Acids

23.29

Weight (kDa)

9.11

Isoelectric Point (pI)

77.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	6.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	6.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	123, 523
AcyI	GRCGYC	2 cut(s)	387, 504
AfaI	GTAC	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	139, 337
AjnI	CCWGG	2 cut(s)	289, 470
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	3 cut(s)	81, 156, 250
AluI	AGCT	3 cut(s)	81, 156, 250
Alw26I	GTCTC	2 cut(s)	83, 476
AlwI	GGATC	2 cut(s)	123, 523
AspLEI	GCGC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	110, 204
BanI	GGYRCC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	364
BccI	CCATC	3 cut(s)	162, 258, 469
BciT130I	CCWGG	2 cut(s)	291, 472
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	83, 476
BfmI	CTRYAG	2 cut(s)	157, 420
BfoI	RGCGCY	1 cut(s)	390
Bme1390I	CCNGG	3 cut(s)	133, 291, 472
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	3 cut(s)	133, 291, 472
BmrI	ACTGGG	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	133
BsaAI	YACGTR	2 cut(s)	34, 511
BsaHI	GRCGYC	2 cut(s)	387, 504
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	113, 326, 410
BseBI	CCWGG	2 cut(s)	291, 472
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	234, 480
BseMII	CTCAG	2 cut(s)	155, 419
BseNI	ACTGG	3 cut(s)	113, 326, 410
BseRI	GAGGAG	4 cut(s)	159, 465, 473, 494
BshNI	GGYRCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	83, 476
BsmI	GAATGC	2 cut(s)	11, 370
Bso31I	GGTCTC	1 cut(s)	476
Bsp143I	GATC	3 cut(s)	128, 273, 515
Bsp19I	CCATGG	1 cut(s)	439
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	156, 420
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	123, 523
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	113, 326, 410
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	3 cut(s)	128, 273, 515
BssNI	GRCGYC	2 cut(s)	387, 504
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	291, 472
Bst6I	CTCTTC	3 cut(s)	32, 134, 450
BstACI	GRCGYC	2 cut(s)	387, 504
BstBAI	YACGTR	2 cut(s)	34, 511
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	164, 182, 428
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	234, 480
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	3 cut(s)	131, 276, 518
BstMAI	GTCTC	2 cut(s)	83, 476
BstMBI	GATC	3 cut(s)	128, 273, 515
BstNI	CCWGG	2 cut(s)	291, 472
BstNSI	RCATGY	2 cut(s)	211, 244
BstSCI	CCNGG	3 cut(s)	131, 289, 470
BstSFI	CTRYAG	2 cut(s)	157, 420
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	128, 515
BstYI	RGATCY	2 cut(s)	128, 515
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	234, 480
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	5 cut(s)	95, 208, 241, 440, 570
CviJI	RGCY	7 cut(s)	81, 156, 163, 250, 409, 438, 498
CviKI_1	RGCY	7 cut(s)	81, 156, 163, 250, 409, 438, 498
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	164, 182, 428
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	3 cut(s)	130, 275, 517
DpnII	GATC	3 cut(s)	128, 273, 515
Eam1104I	CTCTTC	3 cut(s)	32, 134, 450
EarI	CTCTTC	3 cut(s)	32, 134, 450
Eco130I	CCWWGG	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	289, 470
EcoT14I	CCWWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	5 cut(s)	98, 211, 244, 443, 573
FatI	CATG	5 cut(s)	94, 207, 240, 439, 569
FblI	GTMKAC	1 cut(s)	419
FokI	GGATG	2 cut(s)	221, 487
GlaI	GCGC	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	390
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	2 cut(s)	387, 504
Hin1II	CATG	5 cut(s)	98, 211, 244, 443, 573
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	91, 374
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	110, 204
Hpy166II	GTNNAC	2 cut(s)	420, 508
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	2 cut(s)	420, 508
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	14, 95, 296, 440
HpyCH4IV	ACGT	3 cut(s)	33, 504, 510
HpyCH4V	TGCA	3 cut(s)	9, 244, 368
HpyF3I	CTNAG	3 cut(s)	164, 182, 428
HpySE526I	ACGT	3 cut(s)	33, 504, 510
Hsp92I	GRCGYC	2 cut(s)	387, 504
Hsp92II	CATG	5 cut(s)	98, 211, 244, 443, 573
HspAI	GCGC	1 cut(s)	387
KasI	GGCGCC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	128, 273, 515
MaeII	ACGT	3 cut(s)	33, 504, 510
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	3 cut(s)	130, 275, 517
MboI	GATC	3 cut(s)	128, 273, 515
MflI	RGATCY	2 cut(s)	128, 515
MluCI	AATT	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	8 cut(s)	35, 137, 140, 194, 443, 451, 472, 606
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	2 cut(s)	239, 557
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	133, 291, 472
Mva1269I	GAATGC	2 cut(s)	11, 370
MvaI	CCWGG	2 cut(s)	291, 472
NarI	GGCGCC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	439
NdeII	GATC	3 cut(s)	128, 273, 515
NlaIII	CATG	5 cut(s)	98, 211, 244, 443, 573
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	2 cut(s)	211, 244
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	244
PctI	GAATGC	2 cut(s)	11, 370
PfeI	GAWTC	1 cut(s)	374
PleI	GAGTC	1 cut(s)	85
PluTI	GGCGCC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	2 cut(s)	34, 511
Psp6I	CCWGG	2 cut(s)	289, 470
PspGI	CCWGG	2 cut(s)	289, 470
PspN4I	GGNNCC	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	128, 515
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	2 cut(s)	239, 557
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	3 cut(s)	128, 273, 515
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	133, 291, 472
SfcI	CTRYAG	2 cut(s)	157, 420
SfoI	GGCGCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	239, 557
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	238
SspDI	GGCGCC	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	131, 289, 470
StyI	CCWWGG	1 cut(s)	439
TaiI	ACGT	3 cut(s)	36, 507, 513
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	416
XceI	RCATGY	2 cut(s)	211, 244
XmiI	GTMKAC	1 cut(s)	419
ZraI	GACGTC	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.