Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

12984462 .. 12985528

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1168900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTGATGGCCAAAAACAAAAGATCATCAGTTGTGAAAGCAGGAAATGCACGGCCGAAGAAGAACTGGTGGAAGCCAGAAGAGGACTTGATTCTCAAACAATATGTGGAAACCCATGGTGAAGGCAACTGGGCAACTGTTTCCAAGCTTTCAGGTCTGAAGAGGGGAGGAAAGAGCTGTAGGCTAAGATGGAAGAATTACCTGAGACCTAACATCAAACGCGGAGACATGTCCCAAGACGAGAAAGACCTCATCATCCGCATGCATAAGCTTCTTGGCAATCGATGGTCACTGATTGCTGGTCGGCTTCCTGGCCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACACCAGCTGCTGCCCAGCTGGAGGCAAAAGAAAAGGTACCTCTATGACAGACTACTCAAACCATGACACCAATATCACCAAGAAGAAAAACAAAATCAATACGAGTAAGACTTCGAGCACTGCCACCGCTACTGCTGATAATCCGATGATCATCAGTAGTACTGTTCGAAGTCCAAAAGACACCAATTCTGATCATCATCATCAACATCACGAGGAGCCGAATGATGGACCCATATTTGCTACTACCAGTACTACAGAAGAGAGCTGCTTTTACTATGATGTGGACATAGAATCTCCAAGGGAGCTGCACTACTACATGCCTAGCTGCAGTTCAAAATTCAATCCGGCGTTTGCGTTTGATGATGAGCCTTTCATTGGCTACATGGACCCTTTTCTTTTATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

258

Amino Acids

29.35

Weight (kDa)

9.22

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	24 - 68	5.3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 82	3.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 119	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 123	4.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	222, 259, 492
AcoI	YGGCCR	3 cut(s)	9, 53, 313
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	3 cut(s)	403, 526, 616
AfiI	CCNNNNNNNGG	3 cut(s)	386, 590, 740
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	358, 699, 706
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	8 cut(s)	148, 177, 271, 372, 383, 630, 670, 690
AluI	AGCT	8 cut(s)	148, 177, 271, 372, 383, 630, 670, 690
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	2 cut(s)	199, 219
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	9, 53, 313
ApeKI	GCWGC	5 cut(s)	372, 375, 630, 670, 690
ApoI	RAATTY	1 cut(s)	701
Asp718I	GGTACC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	593, 751
AsuHPI	GGTGA	3 cut(s)	16, 131, 433
AsuII	TTCGAA	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	593, 751
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	359, 362, 617, 657, 677
BccI	CCATC	3 cut(s)	183, 279, 584
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	2 cut(s)	513, 556
BcoDI	GTCTC	2 cut(s)	199, 219
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	3 cut(s)	178, 618, 691
BisI	GCNGC	5 cut(s)	373, 376, 631, 671, 691
BlsI	GCNGC	5 cut(s)	374, 377, 632, 672, 692
BmcAI	AGTACT	2 cut(s)	526, 616
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	2 cut(s)	593, 751
BmgT120I	GGNCC	2 cut(s)	593, 751
BmiI	GGNNCC	4 cut(s)	403, 582, 595, 753
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	283
BsaBI	GATNNNNATC	2 cut(s)	515, 561
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	115, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 590, 740
Bse1I	ACTGG	4 cut(s)	71, 134, 347, 612
Bse8I	GATNNNNATC	2 cut(s)	515, 561
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	115, 662
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	2 cut(s)	515, 561
BseLI	CCNNNNNNNGG	3 cut(s)	386, 590, 740
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	4 cut(s)	71, 134, 347, 612
BseRI	GAGGAG	1 cut(s)	593
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	359, 362, 617, 657, 677
BseYI	CCCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	11, 55, 315
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	386, 590, 740
BsmAI	GTCTC	2 cut(s)	199, 219
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	11, 55, 315
Bso31I	GGTCTC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	23, 513, 556
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	3 cut(s)	222, 259, 492
BspANI	GGCC	3 cut(s)	11, 55, 315
BspCNI	CTCAG	1 cut(s)	195
BspDI	ATCGAT	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	403, 582, 595, 753
BspMAI	CTGCAG	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	4 cut(s)	71, 134, 347, 612
BssECI	CCNNGG	2 cut(s)	115, 662
BssMI	GATC	3 cut(s)	23, 513, 556
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	115, 662
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	139, 529
Bst6I	CTCTTC	3 cut(s)	75, 155, 618
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	185, 203
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	26, 516, 559
BstMAI	GTCTC	2 cut(s)	199, 219
BstMBI	GATC	3 cut(s)	23, 513, 556
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	3 cut(s)	232, 265, 685
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	3 cut(s)	178, 618, 691
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	359, 362, 617, 657, 677
BstZI	CGGCCG	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	11, 55, 315
BsuTUI	ATCGAT	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	290, 483
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	593, 751
ClaI	ATCGAT	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	402, 525, 615
CviAII	CATG	6 cut(s)	116, 229, 262, 428, 682, 748
CviQI	GTAC	3 cut(s)	402, 525, 615
DdeI	CTNAG	2 cut(s)	185, 203
DpnI	GATC	3 cut(s)	25, 515, 558
DpnII	GATC	3 cut(s)	23, 513, 556
EaeI	YGGCCR	3 cut(s)	9, 53, 313
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	3 cut(s)	75, 155, 618
EarI	CTCTTC	3 cut(s)	75, 155, 618
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	115, 662
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	593, 751
Eco52I	CGGCCG	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	115, 662
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	115, 662
FaeI	CATG	6 cut(s)	119, 232, 265, 431, 685, 751
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	6 cut(s)	115, 228, 261, 427, 681, 747
FbaI	TGATCA	2 cut(s)	513, 556
Fnu4HI	GCNGC	5 cut(s)	373, 376, 631, 671, 691
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	373, 376, 631, 671, 691
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	5 cut(s)	373, 376, 631, 671, 691
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	11, 55, 315
HapII	CCGG	1 cut(s)	710
Hin1II	CATG	6 cut(s)	119, 232, 265, 431, 685, 751
HindIII	AAGCTT	2 cut(s)	146, 269
HinfI	GANTC	2 cut(s)	91, 656
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	3 cut(s)	16, 131, 433
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	3 cut(s)	159, 510, 556
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	139, 529
HpyCH4V	TGCA	4 cut(s)	50, 265, 673, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	185, 203
Hsp92II	CATG	6 cut(s)	119, 232, 265, 431, 685, 751
KpnI	GGTACC	1 cut(s)	405
Ksp22I	TGATCA	2 cut(s)	513, 556
Kzo9I	GATC	3 cut(s)	23, 513, 556
LmnI	GCTCC	2 cut(s)	580, 667
Lsp1109I	GCAGC	5 cut(s)	359, 362, 617, 657, 677
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	3 cut(s)	25, 515, 558
MboI	GATC	3 cut(s)	23, 513, 556
MboII	GAAGA	8 cut(s)	70, 73, 92, 172, 205, 346, 460, 635
MhlI	GDGCHC	1 cut(s)	485
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	196, 550, 701
MluNI	TGGCCA	1 cut(s)	11
MnlI	CCTC	7 cut(s)	76, 156, 161, 260, 380, 415, 571
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	772
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	2 cut(s)	372, 383
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	23, 513, 556
NlaIII	CATG	6 cut(s)	119, 232, 265, 431, 685, 751
NlaIV	GGNNCC	4 cut(s)	403, 582, 595, 753
NmuCI	GTSAC	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	3 cut(s)	232, 265, 685
NspV	TTCGAA	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	265
PciI	ACATGT	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	91, 656
PkrI	GCNGC	5 cut(s)	374, 377, 632, 672, 692
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	4 cut(s)	403, 582, 595, 753
PspPI	GGNCC	2 cut(s)	593, 751
PstI	CTGCAG	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	375
PvuII	CAGCTG	2 cut(s)	372, 383
RsaI	GTAC	3 cut(s)	403, 526, 616
RsaNI	GTAC	3 cut(s)	402, 525, 615
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	5 cut(s)	373, 376, 631, 671, 691
Sau3AI	GATC	3 cut(s)	23, 513, 556
Sau96I	GGNCC	2 cut(s)	593, 751
ScaI	AGTACT	2 cut(s)	526, 616
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	485
SfcI	CTRYAG	3 cut(s)	178, 618, 691
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	2 cut(s)	593, 751
SmiMI	CAYNNNNRTG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	196, 550, 701
SsiI	CCGC	3 cut(s)	222, 259, 492
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	115, 662
TaaI	ACNGT	2 cut(s)	139, 529
TaqI	TCGA	3 cut(s)	283, 479, 532
TasI	AATT	3 cut(s)	196, 550, 701
TatI	WGTACW	2 cut(s)	524, 614
TfiI	GAWTC	2 cut(s)	91, 656
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TscAI	CASTG	2 cut(s)	297, 490
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	5 cut(s)	372, 375, 630, 670, 690
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	342, 727
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	297, 490
VpaK11BI	GGWCC	2 cut(s)	593, 751
XapI	RAATTY	1 cut(s)	701
XceI	RCATGY	3 cut(s)	232, 265, 685
XspI	CTAG	1 cut(s)	687
ZrmI	AGTACT	2 cut(s)	526, 616
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.