Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

1531905 .. 1533342

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02690.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAAAACAAAAGAGTGAAAGCTTTGCAGCAAGAGCAACACAGTAGTTGGAATAAGAAGAACCTGTGGAAGCCAGAGGAGGATTTGATTCTCAAGAAGTACGTGGAGACTCATGGTGAAGGAAACTGGGCAACTGTTTCCAAGCGATCAGGTTTGAATCGAAGCGGAAAGAGCTGTAGGCTAAGGTGGAAGAACTACTTGAGACCCAACATCAAACGTGGAGATATGTCCGAGGAGGAGGAAGACCTCATTATCCGAATGCATAAGCTCCTTGGCAACCGCTGGTCACTGATTGCTGGTCGGCTTCCCGGTCGAACAGACAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACAACACCGGCTGCTGCCCGGCACCGGAATCTGGAGGTCTGAGCGGCCGCAAAAGAAAAACCAATAATCATGATAACTACTCGGACAATACTCATAAACATCAAGACAACTGCCGGTGTAGTAACAAAACGAGGAAAACCATCGGCGGTACTGAATCAACTAAGACCGAAAGCATGACTCGTGAGGAGGAACTGAAAGATGGAATTAACAGCAAAGAGGACGATCCAAGTACCAGTACTATCACGAGTACTATGACGGCAACAAGTTACCCATACTGGATGGGTGACTACACTAGTAACACAGATCAGAGCTTGAATTTCGACTACGCAGATATAGACCATCAATATTCGCCAAGCAGCAGCTGGATTCAGTGCTGCCTGCCTACAATTACAGGCAACATCGCAACATCATCGTCAACATTTGCATTCGATGATGAGCCTTTCTTTGCCCACATGGATTCTTTTCTCTTGCTCGAAGCAGCATTTGGATGCACTACCGCTGCTGCTGCTGCTACTGAGGGAATGCAATCATCAGCTACGATGCCATTTTCATCTGCTGATGATCCTCATTCCCCACACTACCAGCTATTTCATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

36.12

Weight (kDa)

6.64

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	4 - 27	1.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	405
AciI	CCGC	6 cut(s)	165, 280, 405, 409, 507, 858
AclWI	GGATC	2 cut(s)	578, 917
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	676
AfaI	GTAC	5 cut(s)	101, 511, 592, 598, 610
AfiI	CCNNNNNNNGG	2 cut(s)	385, 392
AgsI	TTSAA	3 cut(s)	157, 355, 676
AhlI	ACTAGT	1 cut(s)	653
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	7 cut(s)	23, 174, 268, 672, 723, 896, 946
AluI	AGCT	7 cut(s)	23, 174, 268, 672, 723, 896, 946
Alw26I	GTCTC	2 cut(s)	101, 196
AlwI	GGATC	2 cut(s)	578, 917
AlwNI	CAGNNNCTG	1 cut(s)	723
AoxI	GGCC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	676
AsuC2I	CCSGG	2 cut(s)	309, 380
AsuHPI	GGTGA	2 cut(s)	128, 656
BanI	GGYRCC	1 cut(s)	382
BauI	CACGAG	2 cut(s)	540, 604
BbsI	GAAGAC	1 cut(s)	249
BccI	CCATC	4 cut(s)	509, 554, 634, 708
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BcnI	CCSGG	2 cut(s)	309, 380
BcoDI	GTCTC	2 cut(s)	101, 196
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	175
BmcAI	AGTACT	2 cut(s)	598, 610
Bme1390I	CCNGG	2 cut(s)	309, 380
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	309, 380
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	839, 891
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	77, 220
BpuMI	CCSGG	2 cut(s)	309, 380
BsaAI	YACGTR	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	231, 271
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 392
Bse118I	RCCGGY	2 cut(s)	368, 474
Bse1I	ACTGG	4 cut(s)	131, 344, 594, 641
BseDI	CCNNGG	2 cut(s)	231, 271
BseGI	GGATG	2 cut(s)	645, 854
BseLI	CCNNNNNNNGG	2 cut(s)	385, 392
BseMII	CTCAG	2 cut(s)	392, 867
BseNI	ACTGG	4 cut(s)	131, 344, 594, 641
BseRI	GAGGAG	4 cut(s)	92, 248, 251, 560
BseX3I	CGGCCG	1 cut(s)	406
Bsh1285I	CGRYCG	2 cut(s)	313, 409
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	2 cut(s)	313, 409
BsiSI	CCGG	5 cut(s)	309, 369, 380, 386, 475
BslI	CCNNNNNNNGG	2 cut(s)	385, 392
BsmAI	GTCTC	2 cut(s)	101, 196
BsmI	GAATGC	3 cut(s)	264, 785, 888
BsnI	GGCC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	146, 583, 664, 922
BspACI	CCGC	6 cut(s)	165, 280, 405, 409, 507, 858
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	2 cut(s)	393, 868
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	578, 917
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	368, 474
BsrI	ACTGG	4 cut(s)	131, 344, 594, 641
BssAI	RCCGGY	2 cut(s)	368, 474
BssECI	CCNNGG	2 cut(s)	231, 271
BssMI	GATC	4 cut(s)	146, 583, 664, 922
BssSI	CACGAG	2 cut(s)	540, 604
BssT1I	CCWWGG	1 cut(s)	271
Bst2BI	CACGAG	2 cut(s)	540, 604
Bst4CI	ACNGT	2 cut(s)	44, 136
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	4 cut(s)	182, 401, 522, 876
BstF5I	GGATG	2 cut(s)	645, 854
BstKTI	GATC	4 cut(s)	149, 586, 667, 925
BstMAI	GTCTC	2 cut(s)	101, 196
BstMBI	GATC	4 cut(s)	146, 583, 664, 922
BstMCI	CGRYCG	2 cut(s)	313, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 171, 866, 869
BstSCI	CCNGG	2 cut(s)	307, 378
BstSFI	CTRYAG	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	249
BstZI	CGGCCG	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	745
BtsCI	GGATG	2 cut(s)	645, 854
BtsIMutI	CAGTG	2 cut(s)	287, 737
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	723
CciI	TCATGA	1 cut(s)	430
CciNI	GCGGCCGC	1 cut(s)	406
Cfr10I	RCCGGY	2 cut(s)	368, 474
Csp6I	GTAC	5 cut(s)	100, 510, 591, 597, 609
CviAII	CATG	4 cut(s)	113, 431, 535, 814
CviQI	GTAC	5 cut(s)	100, 510, 591, 597, 609
DdeI	CTNAG	4 cut(s)	182, 401, 522, 876
DpnI	GATC	4 cut(s)	148, 585, 666, 924
DpnII	GATC	4 cut(s)	146, 583, 664, 922
EaeI	YGGCCR	1 cut(s)	406
EagI	CGGCCG	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	116, 434, 538, 817
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	4 cut(s)	112, 430, 534, 813
FokI	GGATG	2 cut(s)	652, 861
FspBI	CTAG	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	5 cut(s)	309, 369, 380, 386, 475
Hin1II	CATG	4 cut(s)	116, 434, 538, 817
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	8 cut(s)	88, 109, 157, 389, 515, 538, 727, 818
HpaII	CCGG	5 cut(s)	309, 369, 380, 386, 475
HphI	GGTGA	2 cut(s)	128, 656
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	5 cut(s)	232, 257, 402, 445, 669
Hpy188III	TCNNGA	6 cut(s)	94, 393, 431, 464, 542, 604
Hpy8I	GTNNAC	1 cut(s)	777
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	44, 136
HpyCH4IV	ACGT	2 cut(s)	102, 217
HpyCH4V	TGCA	5 cut(s)	28, 262, 785, 852, 886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 171, 866, 869
HpyF3I	CTNAG	4 cut(s)	182, 401, 522, 876
HpySE526I	ACGT	2 cut(s)	102, 217
Hsp92II	CATG	4 cut(s)	116, 434, 538, 817
Kzo9I	GATC	4 cut(s)	146, 583, 664, 922
LmnI	GCTCC	1 cut(s)	273
LweI	GCATC	2 cut(s)	839, 891
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	102, 217
MaeIII	GTNAC	5 cut(s)	285, 482, 626, 644, 656
MalI	GATC	4 cut(s)	148, 585, 666, 924
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	4 cut(s)	146, 583, 664, 922
MboII	GAAGA	4 cut(s)	70, 202, 254, 343
MluCI	AATT	3 cut(s)	564, 676, 747
MlyI	GAGTC	2 cut(s)	103, 532
MmeI	TCCRAC	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	1 cut(s)	847
MspA1I	CMGCKG	3 cut(s)	282, 723, 860
MspI	CCGG	5 cut(s)	309, 369, 380, 386, 475
MspR9I	CCNGG	2 cut(s)	309, 380
Mva1269I	GAATGC	3 cut(s)	264, 785, 888
MwoI	GCNNNNNNNGC	4 cut(s)	34, 171, 866, 869
NciI	CCSGG	2 cut(s)	309, 380
NdeII	GATC	4 cut(s)	146, 583, 664, 922
NlaIII	CATG	4 cut(s)	116, 434, 538, 817
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	285, 644
NotI	GCGGCCGC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	264
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	3 cut(s)	264, 785, 888
PfeI	GAWTC	6 cut(s)	88, 157, 389, 515, 727, 818
PleI	GAGTC	2 cut(s)	103, 532
PpsI	GAGTC	2 cut(s)	103, 532
Ppu21I	YACGTR	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	723
PvuII	CAGCTG	1 cut(s)	723
RsaI	GTAC	5 cut(s)	101, 511, 592, 598, 610
RsaNI	GTAC	5 cut(s)	100, 510, 591, 597, 609
RseI	CAYNNNNRTG	1 cut(s)	847
SaqAI	TTAA	1 cut(s)	567
Sau3AI	GATC	4 cut(s)	146, 583, 664, 922
ScaI	AGTACT	2 cut(s)	598, 610
SchI	GAGTC	2 cut(s)	103, 532
ScrFI	CCNGG	2 cut(s)	309, 380
SfaNI	GCATC	2 cut(s)	839, 891
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	847
SmlI	CTYRAG	2 cut(s)	92, 199
SmoI	CTYRAG	2 cut(s)	92, 199
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	3 cut(s)	564, 676, 747
SsiI	CCGC	6 cut(s)	165, 280, 405, 409, 507, 858
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	307, 378
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	44, 136
TaiI	ACGT	2 cut(s)	105, 220
TaqI	TCGA	5 cut(s)	160, 313, 681, 789, 834
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	3 cut(s)	564, 676, 747
TatI	WGTACW	2 cut(s)	596, 608
TauI	GCSGC	2 cut(s)	408, 411
TfiI	GAWTC	6 cut(s)	88, 157, 389, 515, 727, 818
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	294, 737
TseFI	GTSAC	2 cut(s)	285, 644
Tsp45I	GTSAC	2 cut(s)	285, 644
TspDTI	ATGAA	3 cut(s)	339, 900, 941
TspRI	CASTG	2 cut(s)	294, 737
XapI	RAATTY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	2 cut(s)	598, 610
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.