Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

2238665 .. 2239914

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAAACAAAAGAGTGAAAGCTTTGCAGCCAGAGCAACCAAATAGTTGGAACAAGAAGAACTTGTGGAGGCCAGAGGAGGACTTGATTTTGAAGAAGTACGTGGAGACTCATGGTGAAGGAAACTGGGCAACTGTTTCCAAGCGATCAGGTTTGAATCGGAATGGAAAGAGCTGTAGGCTAAGATGGAAGAACTACTTGAGACCCAACATCAAACGTGGAGACATGTCCCAGGAGGAGGAAGACCTCATTATCCGAATGCATAAGCTTCTTGGCAACCGTTGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACAACACCGCCTGCTACTGCCCCGCACCGGCACCTGGAGGCCGGCGCGGCTGCAAAAGAAAAACCAATGATCATGACCACTACTCAGACGATACTCATCACCATCAAGACAACTGCCAATGTAGTAACAAAAGGAGCAAAATCATCAGCAGTACTGAAACAACTAAGACCGAAAGCATCACTCGTGAAGAGGAACCGAAATATGGAATTAGCAGCAAAGAGGACGATCAAAGTAGTAGTAGTATCATGAGCACTATGACAGCAACAAGTTACCCATACTGGATGGGTGACTACAGTAGTAACACAGATCAGAGCTTGAATTTCGACTACGCAGACATAGACCATCAGTATTCGCCAAGCAGCAGCTGGGTTCAGTACTACCTGCCTACAATTACAAACAACAATGCAACATCGTCGTCAACATTTGTGTTCGATGACGAGCCTTTCATTGCCTATATGGATTCTTTTCTCTTGCTCGAGGCAGCATTTGGATGCACCAGTGCTGCCACTGCTACTAGTGAGGGAATGCAATCATCAGTTATGATGCCATTATCATCTGCTAATGATCCTCATTCCCCACACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

315

Amino Acids

35.97

Weight (kDa)

6.6

Isoelectric Point (pI)

75.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 67	4.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	23 - 81	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	73 - 118	2.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	77 - 121	2.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	391
AccII	CGCG	1 cut(s)	408
AciI	CCGC	3 cut(s)	369, 384, 408
AclWI	GGATC	1 cut(s)	920
AcsI	RAATTY	1 cut(s)	679
AfaI	GTAC	3 cut(s)	101, 514, 737
AfiI	CCNNNNNNNGG	4 cut(s)	238, 388, 395, 563
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	94, 157, 355, 679
AhlI	ACTAGT	1 cut(s)	875
AjnI	CCWGG	3 cut(s)	231, 307, 394
AluBI	AGCT	5 cut(s)	23, 174, 268, 675, 726
AluI	AGCT	5 cut(s)	23, 174, 268, 675, 726
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	3 cut(s)	101, 196, 216
AlwI	GGATC	1 cut(s)	920
AlwNI	CAGNNNCTG	1 cut(s)	726
Ama87I	CYCGRG	1 cut(s)	836
AoxI	GGCC	2 cut(s)	71, 400
ApeKI	GCWGC	7 cut(s)	28, 411, 573, 720, 723, 842, 863
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	128, 452, 659
AvaI	CYCGRG	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	7 cut(s)	40, 398, 585, 732, 735, 850, 854
BccI	CCATC	4 cut(s)	180, 471, 637, 711
BcgI	CGANNNNNNTGC	2 cut(s)	756, 790
BciT130I	CCWGG	3 cut(s)	233, 309, 396
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	101, 196, 216
BcuI	ACTAGT	1 cut(s)	875
BfaI	CTAG	2 cut(s)	876, 946
BfmI	CTRYAG	2 cut(s)	175, 652
BfuAI	ACCTGC	1 cut(s)	750
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	8 cut(s)	29, 409, 412, 574, 721, 724, 843, 864
BlsI	GCNGC	8 cut(s)	30, 410, 413, 575, 722, 725, 844, 865
BmcAI	AGTACT	2 cut(s)	514, 737
Bme1390I	CCNGG	3 cut(s)	233, 309, 396
BmeT110I	CYCGRG	1 cut(s)	836
BmiI	GGNNCC	2 cut(s)	393, 555
BmrFI	CCNGG	3 cut(s)	233, 309, 396
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	546, 842, 894
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 388, 395, 563
Bse118I	RCCGGY	2 cut(s)	388, 402
Bse1I	ACTGG	4 cut(s)	131, 344, 644, 858
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	233, 309, 396
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	648, 857
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	4 cut(s)	238, 388, 395, 563
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	4 cut(s)	131, 344, 644, 858
BseRI	GAGGAG	2 cut(s)	92, 251
BseXI	GCAGC	7 cut(s)	40, 398, 585, 732, 735, 850, 854
BseYI	CCCAGC	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	73, 402
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	2 cut(s)	389, 403
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	4 cut(s)	238, 388, 395, 563
BsmAI	GTCTC	3 cut(s)	101, 196, 216
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	2 cut(s)	264, 891
BsnI	GGCC	2 cut(s)	73, 402
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	5 cut(s)	146, 430, 586, 667, 925
BspACI	CCGC	3 cut(s)	369, 384, 408
BspANI	GGCC	2 cut(s)	73, 402
BspCNI	CTCAG	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	2 cut(s)	433, 606
BspLI	GGNNCC	2 cut(s)	393, 555
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	920
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	2 cut(s)	388, 402
BsrI	ACTGG	4 cut(s)	131, 344, 644, 858
BssAI	RCCGGY	2 cut(s)	388, 402
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	146, 430, 586, 667, 925
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	3 cut(s)	233, 309, 396
Bst4CI	ACNGT	3 cut(s)	136, 281, 656
Bst6I	CTCTTC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	373, 404
BstDEI	CTNAG	3 cut(s)	182, 445, 525
BstF5I	GGATG	2 cut(s)	648, 857
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	5 cut(s)	149, 433, 589, 670, 928
BstMAI	GTCTC	3 cut(s)	101, 196, 216
BstMBI	GATC	5 cut(s)	146, 430, 586, 667, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 408, 869
BstNI	CCWGG	3 cut(s)	233, 309, 396
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	231, 307, 394
BstSFI	CTRYAG	2 cut(s)	175, 652
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	7 cut(s)	40, 398, 585, 732, 735, 850, 854
BstV2I	GAAGAC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	73, 402
BtsCI	GGATG	2 cut(s)	648, 857
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	3 cut(s)	287, 865, 867
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	373, 404
CaiI	CAGNNNCTG	1 cut(s)	726
CciI	TCATGA	2 cut(s)	433, 606
CfoI	GCGC	1 cut(s)	408
Cfr10I	RCCGGY	2 cut(s)	388, 402
Csp6I	GTAC	3 cut(s)	100, 513, 736
CviAII	CATG	4 cut(s)	113, 226, 434, 607
CviQI	GTAC	3 cut(s)	100, 513, 736
DdeI	CTNAG	3 cut(s)	182, 445, 525
DpnI	GATC	5 cut(s)	148, 432, 588, 669, 927
DpnII	GATC	5 cut(s)	146, 430, 586, 667, 925
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	231, 307, 394
EcoT22I	ATGCAT	1 cut(s)	264
FaeI	CATG	4 cut(s)	116, 229, 437, 610
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 182, 214
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	112, 225, 433, 606
FauI	CCCGC	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	8 cut(s)	29, 409, 412, 574, 721, 724, 843, 864
FokI	GGATG	2 cut(s)	655, 864
Fsp4HI	GCNGC	8 cut(s)	29, 409, 412, 574, 721, 724, 843, 864
FspBI	CTAG	2 cut(s)	876, 946
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	8 cut(s)	29, 409, 412, 574, 721, 724, 843, 864
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	73, 402
HapII	CCGG	2 cut(s)	389, 403
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	116, 229, 437, 610
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HindIII	AAGCTT	2 cut(s)	21, 266
HinfI	GANTC	3 cut(s)	109, 157, 821
HpaII	CCGG	2 cut(s)	389, 403
HphI	GGTGA	3 cut(s)	128, 452, 659
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	4 cut(s)	162, 257, 448, 672
Hpy188III	TCNNGA	4 cut(s)	434, 467, 545, 607
Hpy8I	GTNNAC	1 cut(s)	780
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	3 cut(s)	136, 281, 656
HpyCH4IV	ACGT	2 cut(s)	102, 217
HpyCH4V	TGCA	6 cut(s)	28, 262, 414, 767, 855, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 408, 869
HpyF3I	CTNAG	3 cut(s)	182, 445, 525
HpySE526I	ACGT	2 cut(s)	102, 217
Hsp92II	CATG	4 cut(s)	116, 229, 437, 610
HspAI	GCGC	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	146, 430, 586, 667, 925
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	7 cut(s)	40, 398, 585, 732, 735, 850, 854
LweI	GCATC	3 cut(s)	546, 842, 894
MaeI	CTAG	2 cut(s)	876, 946
MaeII	ACGT	2 cut(s)	102, 217
MaeIII	GTNAC	5 cut(s)	285, 485, 629, 647, 659
MalI	GATC	5 cut(s)	148, 432, 588, 669, 927
MboI	GATC	5 cut(s)	146, 430, 586, 667, 925
MboII	GAAGA	6 cut(s)	70, 106, 202, 254, 343, 560
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	3 cut(s)	567, 679, 750
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	264
MroNI	GCCGGC	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	850
MspA1I	CMGCKG	1 cut(s)	726
MspI	CCGG	2 cut(s)	389, 403
MspR9I	CCNGG	3 cut(s)	233, 309, 396
Mva1269I	GAATGC	2 cut(s)	264, 891
MvaI	CCWGG	3 cut(s)	233, 309, 396
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	34, 408, 869
NaeI	GCCGGC	1 cut(s)	404
NdeII	GATC	5 cut(s)	146, 430, 586, 667, 925
NgoMIV	GCCGGC	1 cut(s)	402
NlaIII	CATG	4 cut(s)	116, 229, 437, 610
NlaIV	GGNNCC	2 cut(s)	393, 555
NmuCI	GTSAC	2 cut(s)	285, 647
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	836
PagI	TCATGA	2 cut(s)	433, 606
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	2 cut(s)	264, 891
PdiI	GCCGGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	157, 821
PkrI	GCNGC	8 cut(s)	30, 410, 413, 575, 722, 725, 844, 865
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	103
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	231, 307, 394
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	3 cut(s)	231, 307, 394
PspN4I	GGNNCC	2 cut(s)	393, 555
PspXI	VCTCGAGB	1 cut(s)	836
PstNI	CAGNNNCTG	1 cut(s)	726
PvuII	CAGCTG	1 cut(s)	726
RsaI	GTAC	3 cut(s)	101, 514, 737
RsaNI	GTAC	3 cut(s)	100, 513, 736
RseI	CAYNNNNRTG	1 cut(s)	850
SatI	GCNGC	8 cut(s)	29, 409, 412, 574, 721, 724, 843, 864
Sau3AI	GATC	5 cut(s)	146, 430, 586, 667, 925
ScaI	AGTACT	2 cut(s)	514, 737
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	233, 309, 396
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	3 cut(s)	546, 842, 894
SfcI	CTRYAG	2 cut(s)	175, 652
Sfr274I	CTCGAG	1 cut(s)	836
SlaI	CTCGAG	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	850
SmlI	CTYRAG	2 cut(s)	199, 836
SmoI	CTYRAG	2 cut(s)	199, 836
SpeI	ACTAGT	1 cut(s)	875
Sse9I	AATT	3 cut(s)	567, 679, 750
SsiI	CCGC	3 cut(s)	369, 384, 408
SspMI	CTAG	2 cut(s)	876, 946
StyD4I	CCNGG	3 cut(s)	231, 307, 394
TaaI	ACNGT	3 cut(s)	136, 281, 656
TaiI	ACGT	2 cut(s)	105, 220
TaqI	TCGA	4 cut(s)	313, 684, 792, 837
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	567, 679, 750
TatI	WGTACW	2 cut(s)	512, 735
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	157, 821
TscAI	CASTG	3 cut(s)	294, 865, 874
TseFI	GTSAC	2 cut(s)	285, 647
TseI	GCWGC	7 cut(s)	28, 411, 573, 720, 723, 842, 863
Tsp45I	GTSAC	2 cut(s)	285, 647
TspDTI	ATGAA	2 cut(s)	339, 796
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	294, 865, 874
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	836
XspI	CTAG	2 cut(s)	876, 946
ZrmI	AGTACT	2 cut(s)	514, 737
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.