Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

10444097 .. 10444760

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCCCAAGAGGAGAAAGACCTCATCATCCGCATGCACAAGCTTCTTGGCAATCGATGGTCACTGATTGCTGGTCGGCTTCCTGGCCGGACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACACCAGCTGCTGCCCAGCTGGAGGCAAAAGAAAAGGTACCACTATGACAGACTACTCAAACCATGACACCAATATCACTAAGAAGAAAAACAAAATCAATACGAGTAAGACTTCGCGCACTGCCACCGCTACTGCTGATAATCCTACTGCTGATAATCCGATGATCATCAGTAGTACTGTTCGAAGTCCAAAAGACACCAATTCTGATCATCATCATCAACATCACGAGGAGCCGAATGATGGACCCATATTTGCTACTACCAGTACTACAGAAGAGAGCTGCTTTTACTATGATGTGGACATAGAATCTCCAAGGGAGCTGCACTACTACATGCCTAACTGCAGTTCAAACTTCAATCCGGCGTTTGTGTTTGATGATGAGCCTTTCATTGGCTACATGGACCCTTTTCTTTTATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

187

Amino Acids

21.21

Weight (kDa)

5.97

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 43	4.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 47	6.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	31, 264
AcoI	YGGCCR	1 cut(s)	85
AfaI	GTAC	3 cut(s)	175, 313, 403
AfiI	CCNNNNNNNGG	3 cut(s)	158, 377, 527
AgsI	TTSAA	3 cut(s)	130, 486, 493
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	5 cut(s)	43, 144, 155, 417, 457
AluI	AGCT	5 cut(s)	43, 144, 155, 417, 457
AlwNI	CAGNNNCTG	1 cut(s)	147
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	4 cut(s)	144, 147, 417, 457
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	380, 538
AsuII	TTCGAA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	380, 538
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	131, 134, 404, 444
BccI	CCATC	2 cut(s)	51, 371
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	2 cut(s)	300, 343
BfmI	CTRYAG	2 cut(s)	405, 478
BisI	GCNGC	4 cut(s)	145, 148, 418, 458
BlsI	GCNGC	4 cut(s)	146, 149, 419, 459
BmcAI	AGTACT	2 cut(s)	313, 403
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	380, 538
BmgT120I	GGNCC	2 cut(s)	380, 538
BmiI	GGNNCC	4 cut(s)	175, 369, 382, 540
BmrFI	CCNGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	55
BsaBI	GATNNNNATC	2 cut(s)	302, 348
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 377, 527
Bse1I	ACTGG	2 cut(s)	119, 399
Bse8I	GATNNNNATC	2 cut(s)	302, 348
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	2 cut(s)	302, 348
BseLI	CCNNNNNNNGG	3 cut(s)	158, 377, 527
BseNI	ACTGG	2 cut(s)	119, 399
BseRI	GAGGAG	2 cut(s)	26, 380
BseXI	GCAGC	4 cut(s)	131, 134, 404, 444
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	88, 497
BslI	CCNNNNNNNGG	3 cut(s)	158, 377, 527
BsnI	GGCC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	300, 343
BspACI	CCGC	2 cut(s)	31, 264
BspANI	GGCC	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	4 cut(s)	175, 369, 382, 540
BspMAI	CTGCAG	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	119, 399
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	300, 343
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	303, 346
BstMBI	GATC	2 cut(s)	300, 343
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	37, 472
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	405, 478
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	4 cut(s)	131, 134, 404, 444
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	62, 255
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	380, 538
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	174, 312, 402
CviAII	CATG	4 cut(s)	34, 200, 469, 535
CviQI	GTAC	3 cut(s)	174, 312, 402
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	302, 345
DpnII	GATC	2 cut(s)	300, 343
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	380, 538
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	4 cut(s)	37, 203, 472, 538
FaiI	YATR	8 cut(s)	35, 182, 201, 386, 429, 440, 470, 536
FatI	CATG	4 cut(s)	33, 199, 468, 534
FbaI	TGATCA	2 cut(s)	300, 343
Fnu4HI	GCNGC	4 cut(s)	145, 148, 418, 458
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	145, 148, 418, 458
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	4 cut(s)	145, 148, 418, 458
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	88, 497
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	37, 203, 472, 538
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	2 cut(s)	88, 497
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	297, 343
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	37, 460, 480
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	37, 203, 472, 538
HspAI	GCGC	1 cut(s)	253
KpnI	GGTACC	1 cut(s)	177
Ksp22I	TGATCA	2 cut(s)	300, 343
Kzo9I	GATC	2 cut(s)	300, 343
LmnI	GCTCC	2 cut(s)	367, 454
Lsp1109I	GCAGC	4 cut(s)	131, 134, 404, 444
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	2 cut(s)	302, 345
MboI	GATC	2 cut(s)	300, 343
MboII	GAAGA	3 cut(s)	118, 232, 422
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	4 cut(s)	4, 32, 152, 358
MseI	TTAA	1 cut(s)	559
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	144, 155
MspI	CCGG	2 cut(s)	88, 497
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	253
NdeII	GATC	2 cut(s)	300, 343
NlaIII	CATG	4 cut(s)	37, 203, 472, 538
NlaIV	GGNNCC	4 cut(s)	175, 369, 382, 540
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	2 cut(s)	37, 472
NspV	TTCGAA	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	146, 149, 419, 459
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	175, 369, 382, 540
PspPI	GGNCC	2 cut(s)	380, 538
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	144, 155
RsaI	GTAC	3 cut(s)	175, 313, 403
RsaNI	GTAC	3 cut(s)	174, 312, 402
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	559
SatI	GCNGC	4 cut(s)	145, 148, 418, 458
Sau3AI	GATC	2 cut(s)	300, 343
Sau96I	GGNCC	2 cut(s)	380, 538
ScaI	AGTACT	2 cut(s)	313, 403
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	7 cut(s)	24, 45, 146, 157, 175, 419, 459
SfcI	CTRYAG	2 cut(s)	405, 478
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	2 cut(s)	380, 538
SmiMI	CAYNNNNRTG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	31, 264
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	55, 319
TasI	AATT	1 cut(s)	337
TatI	WGTACW	2 cut(s)	311, 401
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	559
Tru9I	TTAA	1 cut(s)	559
TscAI	CASTG	2 cut(s)	69, 262
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	4 cut(s)	144, 147, 417, 457
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	114, 514
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	69, 262
VpaK11BI	GGWCC	2 cut(s)	380, 538
XceI	RCATGY	2 cut(s)	37, 472
ZrmI	AGTACT	2 cut(s)	313, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.