Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

2205170 .. 2207318

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCCCAGGAGGAGGAAGACCTCATTATCCGAATGCATAAGCTTCTTGGCAACCGTTGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACAACACCGCCTGCTCCTGCCCTGCACCGGCACCTGGAGGCAGGTGCGGCCGCAAAAGAAAAACCAATGATCATGACCACTACTCGGACGATACTCATCACCATCAAGACAACTGCCAATGTAGTAACAAAAGGAGCAAAATCATCAGCAGTACTGAAACAACTAAGACCGAAAGCATCACTCGTGAAGAGGAACCGAAATATGGAATTAGCAGCAAAGAGGACGATCAAAGTAGTAGTAGTATCATGAGCACTATGACAGCAACAAGTTACCCATACTGGATGGGTGACTACAGTAGTAACACAGATCAGAGCTTGAATTTCGACTACGCAGACATAGACCATCAGTATTCGCCAAGCAGCAGCTGGGTTCAGTACTACCTGCCTACAATTACAAACAACAATGCAACATCGTCGTCGACGTTTGTGTTCGATGACGAGCCTTTCATTGCCTATATGGATTCTTTTCTCTTGCTCGAAGCAGCATTTGGATGCACCAGTGCGTCCACTGCTACTAGTGAGGGAATGCAATCATCAGTTATGATGCCATTATCATCTGCTAATGATCCTCATTCCCCACACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

26.96

Weight (kDa)

5.17

Isoelectric Point (pI)

73.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 43	2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 46	1.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	168
Acc36I	ACCTGC	2 cut(s)	168, 525
AccB1I	GGYRCC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	3 cut(s)	144, 183, 187
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	2 cut(s)	289, 512
AfiI	CCNNNNNNNGG	5 cut(s)	13, 163, 170, 220, 338
AgsI	TTSAA	2 cut(s)	130, 454
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	6, 82, 169
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	3 cut(s)	43, 450, 501
AluI	AGCT	3 cut(s)	43, 450, 501
Alw21I	GWGCWC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	695
AlwNI	CAGNNNCTG	1 cut(s)	501
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	348, 495, 498, 617
ApoI	RAATTY	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	227, 434
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	4 cut(s)	360, 507, 510, 629
BccI	CCATC	3 cut(s)	246, 412, 486
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	3 cut(s)	8, 84, 171
BclI	TGATCA	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	2 cut(s)	651, 721
BfmI	CTRYAG	1 cut(s)	427
BfuAI	ACCTGC	2 cut(s)	168, 525
BisI	GCNGC	6 cut(s)	184, 187, 349, 496, 499, 618
BlsI	GCNGC	6 cut(s)	185, 188, 350, 497, 500, 619
BmcAI	AGTACT	2 cut(s)	289, 512
Bme1390I	CCNGG	3 cut(s)	8, 84, 171
BmiI	GGNNCC	2 cut(s)	168, 330
BmrFI	CCNGG	3 cut(s)	8, 84, 171
BmsI	GCATC	3 cut(s)	321, 617, 669
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 163, 170, 220, 338
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	119, 419, 633
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	8, 84, 171
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	423, 632
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	5 cut(s)	13, 163, 170, 220, 338
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	119, 419, 633
BseRI	GAGGAG	1 cut(s)	26
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	360, 507, 510, 629
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	5 cut(s)	13, 163, 170, 220, 338
BsmI	GAATGC	2 cut(s)	39, 666
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	205, 361, 442, 700
BspACI	CCGC	3 cut(s)	144, 183, 187
BspANI	GGCC	1 cut(s)	186
BspHI	TCATGA	2 cut(s)	208, 381
BspLI	GGNNCC	2 cut(s)	168, 330
BspMI	ACCTGC	2 cut(s)	168, 525
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	3 cut(s)	119, 419, 633
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	205, 361, 442, 700
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	8, 84, 171
Bst4CI	ACNGT	2 cut(s)	56, 431
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	423, 632
BstKTI	GATC	4 cut(s)	208, 364, 445, 703
BstMBI	GATC	4 cut(s)	205, 361, 442, 700
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 644
BstNI	CCWGG	3 cut(s)	8, 84, 171
BstSCI	CCNGG	3 cut(s)	6, 82, 169
BstSFI	CTRYAG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	360, 507, 510, 629
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	423, 632
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	3 cut(s)	62, 640, 642
BveI	ACCTGC	2 cut(s)	168, 525
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	501
CciI	TCATGA	2 cut(s)	208, 381
CciNI	GCGGCCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	163
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	288, 511
CviAII	CATG	2 cut(s)	209, 382
CviJI	RGCY	6 cut(s)	43, 79, 186, 450, 501, 577
CviKI_1	RGCY	6 cut(s)	43, 79, 186, 450, 501, 577
CviQI	GTAC	2 cut(s)	288, 511
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	4 cut(s)	207, 363, 444, 702
DpnII	GATC	4 cut(s)	205, 361, 442, 700
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	184
Eco52I	CGGCCG	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	6, 82, 169
EcoT22I	ATGCAT	1 cut(s)	39
FaeI	CATG	2 cut(s)	212, 385
FatI	CATG	2 cut(s)	208, 381
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	6 cut(s)	184, 187, 349, 496, 499, 618
FokI	GGATG	2 cut(s)	430, 639
Fsp4HI	GCNGC	6 cut(s)	184, 187, 349, 496, 499, 618
FspBI	CTAG	2 cut(s)	651, 721
GluI	GCNGC	6 cut(s)	184, 187, 349, 496, 499, 618
GsaI	CCCAGC	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	212, 385
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	227, 434
Hpy166II	GTNNAC	2 cut(s)	555, 642
Hpy188I	TCNGA	3 cut(s)	32, 223, 447
Hpy188III	TCNNGA	4 cut(s)	209, 242, 320, 382
Hpy8I	GTNNAC	2 cut(s)	555, 642
Hpy99I	CGWCG	3 cut(s)	553, 556, 559
HpyCH4III	ACNGT	2 cut(s)	56, 431
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	5 cut(s)	37, 161, 542, 630, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 644
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	2 cut(s)	212, 385
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	205, 361, 442, 700
LmnI	GCTCC	2 cut(s)	155, 270
Lsp1109I	GCAGC	4 cut(s)	360, 507, 510, 629
LweI	GCATC	3 cut(s)	321, 617, 669
MaeI	CTAG	2 cut(s)	651, 721
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	5 cut(s)	60, 260, 404, 422, 434
MalI	GATC	4 cut(s)	207, 363, 444, 702
MboI	GATC	4 cut(s)	205, 361, 442, 700
MboII	GAAGA	3 cut(s)	29, 118, 335
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	342, 454, 525
MnlI	CCTC	8 cut(s)	4, 7, 32, 167, 319, 349, 649, 714
Mph1103I	ATGCAT	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	8, 84, 171
Mva1269I	GAATGC	2 cut(s)	39, 666
MvaI	CCWGG	3 cut(s)	8, 84, 171
MwoI	GCNNNNNNNGC	2 cut(s)	183, 644
NdeII	GATC	4 cut(s)	205, 361, 442, 700
NlaIII	CATG	2 cut(s)	212, 385
NlaIV	GGNNCC	2 cut(s)	168, 330
NmuCI	GTSAC	2 cut(s)	60, 422
NotI	GCGGCCGC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	39
PagI	TCATGA	2 cut(s)	208, 381
PaqCI	CACCTGC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PctI	GAATGC	2 cut(s)	39, 666
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	6 cut(s)	185, 188, 350, 497, 500, 619
Psp6I	CCWGG	3 cut(s)	6, 82, 169
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	3 cut(s)	6, 82, 169
PspN4I	GGNNCC	2 cut(s)	168, 330
PstNI	CAGNNNCTG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	289, 512
RsaNI	GTAC	2 cut(s)	288, 511
RseI	CAYNNNNRTG	1 cut(s)	625
SalI	GTCGAC	1 cut(s)	553
SatI	GCNGC	6 cut(s)	184, 187, 349, 496, 499, 618
Sau3AI	GATC	4 cut(s)	205, 361, 442, 700
ScaI	AGTACT	2 cut(s)	289, 512
ScrFI	CCNGG	3 cut(s)	8, 84, 171
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	8 cut(s)	24, 45, 172, 182, 452, 503, 519, 560
SfaNI	GCATC	3 cut(s)	321, 617, 669
SfcI	CTRYAG	1 cut(s)	427
SgrDI	CGTCGACG	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	625
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	3 cut(s)	342, 454, 525
SsiI	CCGC	3 cut(s)	144, 183, 187
SspMI	CTAG	2 cut(s)	651, 721
StyD4I	CCNGG	3 cut(s)	6, 82, 169
TaaI	ACNGT	2 cut(s)	56, 431
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	5 cut(s)	88, 459, 554, 567, 612
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	342, 454, 525
TatI	WGTACW	2 cut(s)	287, 510
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	3 cut(s)	69, 640, 649
TseFI	GTSAC	2 cut(s)	60, 422
TseI	GCWGC	4 cut(s)	348, 495, 498, 617
Tsp45I	GTSAC	2 cut(s)	60, 422
TspDTI	ATGAA	2 cut(s)	114, 571
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	69, 640, 649
XapI	RAATTY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	2 cut(s)	651, 721
ZrmI	AGTACT	2 cut(s)	289, 512
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.