Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

2086054 .. 2087400

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1027500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACCGGAAACAAAAGATCATCATCAGTTGTGAAAGCAGGAAATGCACAGCCGAAGAAGAACTTGTGGAAGCCAGAGGAGGACTTGATTCTCCGACAATATGTGGAAACTCATGGTGAAGGCAACTGGGCAACTGTTTCCAAGCGATCAGGTCTGAAGAGGGGAGGAAAGAGCTGTAGGCTAAGATGGAAGAATTACTTGAGACCTAACATCAAACGTGGAGACATGTCCCAAGAAGAGCAAGACCTCATCATCCGCATGCACAAGCTTCTTGGCAATCGATGGTCACTGATCGCGGGCCGACTTCCTGGCCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAATATCAGCTGCTGCCCGGCAGCTGGAAGCAAAAGGAAAAGTACCACCATCACTGACTACTCAAACGATGGCATCAATATCACTAAGAAAAAGAACAAAATCGGCACGGGTAAGACTTCGAGCACTGGCACTACTACTACTGATGATCCGATGATCACCAGTAGTACTGATCGAATTCCAAAAGACACCAGTTCTGATCATCAGCATCAGCATCACAAGGAGCCGAATATTGAATCAATGTTTACTTCTACTAGTACAGAAGAGAGCTGGTTTTACGACGACATGGACTTTGAATCTCCAAGTGAGCTGCAGTACTACCAGTATTACCTGCCCAGCTTCAGTTCAAACTTCAACGCAGCGTTTGCGTTTGATGACGAGCCTTTCATTGGATATATGGACTCTCTTCTTTTATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

260

Amino Acids

29.59

Weight (kDa)

8.79

Isoelectric Point (pI)

70.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 67	2.4e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	23 - 80	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	73 - 118	3.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	77 - 123	3.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
AccII	CGCG	1 cut(s)	296
AciI	CCGC	2 cut(s)	256, 296
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	2 cut(s)	176, 682
AfaI	GTAC	4 cut(s)	403, 526, 616, 674
AfiI	CCNNNNNNNGG	2 cut(s)	383, 746
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	5 cut(s)	355, 593, 653, 705, 712
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	7 cut(s)	174, 268, 369, 383, 627, 667, 696
AluI	AGCT	7 cut(s)	174, 268, 369, 383, 627, 667, 696
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	2 cut(s)	196, 216
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	298, 310
ApeKI	GCWGC	5 cut(s)	369, 372, 380, 667, 716
ApoI	RAATTY	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	128, 508
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	356, 359, 392, 654, 728
BccI	CCATC	4 cut(s)	180, 276, 416, 422
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	2 cut(s)	513, 556
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	196, 216
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	2 cut(s)	175, 668
BfuAI	ACCTGC	1 cut(s)	696
BisI	GCNGC	5 cut(s)	370, 373, 381, 668, 717
BlsI	GCNGC	5 cut(s)	371, 374, 382, 669, 718
BmcAI	AGTACT	2 cut(s)	526, 674
Bme1390I	CCNGG	2 cut(s)	309, 377
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	309, 377
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	441, 574, 580
BmuI	ACTGGG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 746
Bse1I	ACTGG	6 cut(s)	131, 344, 490, 519, 549, 679
Bse8I	GATNNNNATC	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	280
BseGI	GGATG	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	383, 746
BseNI	ACTGG	6 cut(s)	131, 344, 490, 519, 549, 679
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	5 cut(s)	356, 359, 392, 654, 728
BseYI	CCCAGC	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	300, 312
BshVI	ATCGAT	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	6, 377
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	383, 746
BsmAI	GTCTC	2 cut(s)	196, 216
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	300, 312
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
BspACI	CCGC	2 cut(s)	256, 296
BspANI	GGCC	2 cut(s)	300, 312
BspDI	ATCGAT	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	672
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	500
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	196
BsrI	ACTGG	6 cut(s)	131, 344, 490, 519, 549, 679
BssMI	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	4 cut(s)	152, 231, 615, 768
BstAPI	GCANNNNNTGC	2 cut(s)	44, 722
BstC8I	GCNNGC	2 cut(s)	260, 298
BstDEI	CTNAG	2 cut(s)	182, 444
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	7 cut(s)	20, 149, 294, 508, 516, 532, 559
BstMAI	GTCTC	2 cut(s)	196, 216
BstMBI	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 722
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	229, 262
BstSCI	CCNGG	2 cut(s)	307, 375
BstSFI	CTRYAG	2 cut(s)	175, 668
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	5 cut(s)	356, 359, 392, 654, 728
Bsu15I	ATCGAT	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	300, 312
BsuTUI	ATCGAT	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	287, 411, 483
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	2 cut(s)	260, 298
CaiI	CAGNNNCTG	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	402, 525, 615, 673
CviAII	CATG	4 cut(s)	113, 226, 259, 643
CviQI	GTAC	4 cut(s)	402, 525, 615, 673
DdeI	CTNAG	2 cut(s)	182, 444
DpnI	GATC	7 cut(s)	19, 148, 293, 507, 515, 531, 558
DpnII	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	4 cut(s)	152, 231, 615, 768
EarI	CTCTTC	4 cut(s)	152, 231, 615, 768
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	176, 682
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	116, 229, 262, 646
FaiI	YATR	7 cut(s)	102, 114, 227, 260, 644, 753, 755
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 182, 214
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	112, 225, 258, 642
FauI	CCCGC	1 cut(s)	289
FbaI	TGATCA	2 cut(s)	513, 556
Fnu4HI	GCNGC	5 cut(s)	370, 373, 381, 668, 717
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	5 cut(s)	370, 373, 381, 668, 717
FspBI	CTAG	1 cut(s)	612
GluI	GCNGC	5 cut(s)	370, 373, 381, 668, 717
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	300, 312
HapII	CCGG	2 cut(s)	6, 377
Hin1II	CATG	4 cut(s)	116, 229, 262, 646
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	88, 593, 653, 758
HpaII	CCGG	2 cut(s)	6, 377
HphI	GGTGA	2 cut(s)	128, 508
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	4 cut(s)	95, 156, 510, 556
Hpy8I	GTNNAC	1 cut(s)	603
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	47, 262, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 722
HpyF3I	CTNAG	2 cut(s)	182, 444
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	116, 229, 262, 646
Ksp22I	TGATCA	2 cut(s)	513, 556
Kzo9I	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	5 cut(s)	356, 359, 392, 654, 728
LweI	GCATC	3 cut(s)	441, 574, 580
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	7 cut(s)	19, 148, 293, 507, 515, 531, 558
MboI	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
MboII	GAAGA	8 cut(s)	67, 70, 169, 202, 248, 343, 632, 755
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	2 cut(s)	193, 534
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	70, 73, 153, 158, 257
MseI	TTAA	1 cut(s)	778
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	2 cut(s)	369, 383
MspI	CCGG	2 cut(s)	6, 377
MspR9I	CCNGG	2 cut(s)	309, 377
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	44, 722
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
NlaIII	CATG	4 cut(s)	116, 229, 262, 646
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	285
NspI	RCATGY	2 cut(s)	229, 262
PaeI	GCATGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	88, 593, 653
PkrI	GCNGC	5 cut(s)	371, 374, 382, 669, 718
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	372
PvuII	CAGCTG	2 cut(s)	369, 383
RsaI	GTAC	4 cut(s)	403, 526, 616, 674
RsaNI	GTAC	4 cut(s)	402, 525, 615, 673
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	778
SatI	GCNGC	5 cut(s)	370, 373, 381, 668, 717
Sau3AI	GATC	7 cut(s)	17, 146, 291, 505, 513, 529, 556
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	2 cut(s)	526, 674
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	309, 377
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	441, 574, 580
SfcI	CTRYAG	2 cut(s)	175, 668
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	611
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	2 cut(s)	193, 534
SsiI	CCGC	2 cut(s)	256, 296
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	2 cut(s)	307, 375
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	280, 479, 532
TasI	AATT	2 cut(s)	193, 534
TatI	WGTACW	3 cut(s)	524, 614, 672
TfiI	GAWTC	3 cut(s)	88, 593, 653
Tru1I	TTAA	1 cut(s)	778
Tru9I	TTAA	1 cut(s)	778
TscAI	CASTG	3 cut(s)	294, 418, 490
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	5 cut(s)	369, 372, 380, 667, 716
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	339, 733
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	294, 418, 490
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	2 cut(s)	229, 262
XspI	CTAG	1 cut(s)	612
ZrmI	AGTACT	2 cut(s)	526, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.