Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Forward (+)

89991802 .. 89993144

Gene Structure 1343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAAAATAAAAGAGTGAAAGCTTTGCAGCAAGAGCAACCAAATAGTTGGAACAAGAAGAACTTGTGGAGGCCAGAGGAGGACTTGATTTTGAAGAAGTACGTGGAGACTCATGGTGAAGGAAACTGGGCAACTGTTTCCAAGCGATCAGTCATAGCAATTTTAAGACTTCTCATATCTATTGCCGCTCGAAAATTGAAACCAAACGAAAATGATACTTTTGTGAGTTGGTCCCTGATTGCTGGTCGGCTTCCTGGTCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACAACACCGCCTGCTCCTGCCCCTCACCGGCACCTGGAGGCAGGTGCGGCCGCAAAAGAAAAACCAATGATCATGACCACTACTCGGACGATACTTATCACCATCAAAACAACTGCCAATGTAGTAACAAAAGGAGCAAAATCATCAGCAGTACTGAAACAACTAAGACCGAAAGCATCACTCGTGAAGAGGAACCGAAATATGGAATTAGCAGCAAAGAGGACGATCAAAGTAGTAGTAGTATCATGAGCACTATGACAGCAACAAGTTACCCATACTGGATGGGTGACTACAGTAGTAACACAGATCAGAGCTTGAATTTCGACTACGCAGACATAGACCATCAGTATTCGCCAAGCAGCAGCTGGGTTCAGTACTACCTGCCTACAATTACAAACAACAATGCAACATCGTCGTCGACATTTGTGTTCGATGACGAGCCTTTCATTGCCTACATGAATTCTTTTCTCTTGCTCGAAGCAGCATTTGGATGCACCAGTGCTGCCACTGCTACTAGTGAGGGAATGCAATCATCAGTTATGATGCCATTATCATCTGCTAATGATCCTCATTCCCCACACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.55

Weight (kDa)

6.14

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 48	1.4e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 100	7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	339
Acc36I	ACCTGC	2 cut(s)	339, 696
AccB1I	GGYRCC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	4 cut(s)	186, 315, 354, 358
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	625, 766
AfaI	GTAC	3 cut(s)	101, 460, 683
AfiI	CCNNNNNNNGG	4 cut(s)	334, 341, 391, 509
AgsI	TTSAA	4 cut(s)	94, 199, 301, 625
AhlI	ACTAGT	1 cut(s)	821
AjnI	CCWGG	2 cut(s)	253, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	3 cut(s)	23, 621, 672
AluI	AGCT	3 cut(s)	23, 621, 672
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	866
AlwNI	CAGNNNCTG	1 cut(s)	672
AoxI	GGCC	2 cut(s)	71, 355
ApeKI	GCWGC	6 cut(s)	28, 519, 666, 669, 788, 809
ApoI	RAATTY	2 cut(s)	625, 766
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	4 cut(s)	128, 324, 398, 605
AvaII	GGWCC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanI	GGYRCC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	6 cut(s)	40, 531, 678, 681, 796, 800
BccI	CCATC	3 cut(s)	417, 583, 657
BcgI	CGANNNNNNTGC	2 cut(s)	702, 736
BciT130I	CCWGG	2 cut(s)	255, 342
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	2 cut(s)	822, 892
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	2 cut(s)	339, 696
BisI	GCNGC	9 cut(s)	29, 186, 355, 358, 520, 667, 670, 789, 810
BlsI	GCNGC	9 cut(s)	30, 187, 356, 359, 521, 668, 671, 790, 811
BmcAI	AGTACT	2 cut(s)	460, 683
Bme1390I	CCNGG	2 cut(s)	255, 342
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	233, 339, 501
BmrFI	CCNGG	2 cut(s)	255, 342
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	492, 788, 840
BmuI	ACTGGG	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 341, 391, 509
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	4 cut(s)	131, 290, 590, 804
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	255, 342
BseGI	GGATG	2 cut(s)	594, 803
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	334, 341, 391, 509
BseMI	GCAATG	1 cut(s)	753
BseNI	ACTGG	4 cut(s)	131, 290, 590, 804
BseRI	GAGGAG	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	355
BseXI	GCAGC	6 cut(s)	40, 531, 678, 681, 796, 800
BseYI	CCCAGC	1 cut(s)	672
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	73, 357
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	4 cut(s)	334, 341, 391, 509
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	2 cut(s)	73, 357
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	5 cut(s)	146, 376, 532, 613, 871
BspACI	CCGC	4 cut(s)	186, 315, 354, 358
BspANI	GGCC	2 cut(s)	73, 357
BspHI	TCATGA	2 cut(s)	379, 552
BspLI	GGNNCC	3 cut(s)	233, 339, 501
BspMI	ACCTGC	2 cut(s)	339, 696
BspPI	GGATC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	4 cut(s)	131, 290, 590, 804
BssAI	RCCGGY	1 cut(s)	334
BssMI	GATC	5 cut(s)	146, 376, 532, 613, 871
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	255, 342
Bst4CI	ACNGT	2 cut(s)	136, 602
Bst6I	CTCTTC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	594, 803
BstKTI	GATC	5 cut(s)	149, 379, 535, 616, 874
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	146, 376, 532, 613, 871
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 354, 815
BstNI	CCWGG	2 cut(s)	255, 342
BstSCI	CCNGG	2 cut(s)	253, 340
BstSFI	CTRYAG	1 cut(s)	598
BstV1I	GCAGC	6 cut(s)	40, 531, 678, 681, 796, 800
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	73, 357
BtsCI	GGATG	2 cut(s)	594, 803
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	811, 813
BveI	ACCTGC	2 cut(s)	339, 696
Cac8I	GCNNGC	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	2 cut(s)	379, 552
CciNI	GCGGCCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	100, 459, 682
CviAII	CATG	4 cut(s)	113, 380, 553, 763
CviJI	RGCY	7 cut(s)	23, 73, 250, 357, 621, 672, 748
CviKI_1	RGCY	7 cut(s)	23, 73, 250, 357, 621, 672, 748
CviQI	GTAC	3 cut(s)	100, 459, 682
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	5 cut(s)	148, 378, 534, 615, 873
DpnII	GATC	5 cut(s)	146, 376, 532, 613, 871
EaeI	YGGCCR	1 cut(s)	355
EagI	CGGCCG	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EclXI	CGGCCG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	253, 340
FaeI	CATG	4 cut(s)	116, 383, 556, 766
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	112, 379, 552, 762
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	9 cut(s)	29, 186, 355, 358, 520, 667, 670, 789, 810
FokI	GGATG	2 cut(s)	601, 810
Fsp4HI	GCNGC	9 cut(s)	29, 186, 355, 358, 520, 667, 670, 789, 810
FspBI	CTAG	2 cut(s)	822, 892
GluI	GCNGC	9 cut(s)	29, 186, 355, 358, 520, 667, 670, 789, 810
GsaI	CCCAGC	1 cut(s)	676
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	73, 357
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	4 cut(s)	116, 383, 556, 766
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	4 cut(s)	128, 324, 398, 605
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	2 cut(s)	394, 618
Hpy188III	TCNNGA	3 cut(s)	380, 491, 553
Hpy8I	GTNNAC	1 cut(s)	726
Hpy99I	CGWCG	2 cut(s)	724, 727
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	136, 602
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	28, 713, 801, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 354, 815
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	116, 383, 556, 766
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	146, 376, 532, 613, 871
LmnI	GCTCC	2 cut(s)	326, 441
Lsp1109I	GCAGC	6 cut(s)	40, 531, 678, 681, 796, 800
LweI	GCATC	3 cut(s)	492, 788, 840
MaeI	CTAG	2 cut(s)	822, 892
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	431, 575, 593, 605
MalI	GATC	5 cut(s)	148, 378, 534, 615, 873
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	5 cut(s)	146, 376, 532, 613, 871
MboII	GAAGA	4 cut(s)	70, 106, 289, 506
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	6 cut(s)	159, 194, 513, 625, 696, 766
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	9 cut(s)	63, 70, 73, 338, 340, 490, 520, 820, 885
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	796
MspA1I	CMGCKG	1 cut(s)	672
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	255, 342
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	2 cut(s)	255, 342
MwoI	GCNNNNNNNGC	3 cut(s)	34, 354, 815
NdeII	GATC	5 cut(s)	146, 376, 532, 613, 871
NlaIII	CATG	4 cut(s)	116, 383, 556, 766
NlaIV	GGNNCC	3 cut(s)	233, 339, 501
NmuCI	GTSAC	1 cut(s)	593
NotI	GCGGCCGC	1 cut(s)	355
PagI	TCATGA	2 cut(s)	379, 552
PaqCI	CACCTGC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	837
PkrI	GCNGC	9 cut(s)	30, 187, 356, 359, 521, 668, 671, 790, 811
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	253, 340
PspFI	CCCAGC	1 cut(s)	672
PspGI	CCWGG	2 cut(s)	253, 340
PspN4I	GGNNCC	3 cut(s)	233, 339, 501
PspPI	GGNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	672
PvuII	CAGCTG	1 cut(s)	672
RsaI	GTAC	3 cut(s)	101, 460, 683
RsaNI	GTAC	3 cut(s)	100, 459, 682
RseI	CAYNNNNRTG	1 cut(s)	796
SalI	GTCGAC	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	9 cut(s)	29, 186, 355, 358, 520, 667, 670, 789, 810
Sau3AI	GATC	5 cut(s)	146, 376, 532, 613, 871
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	2 cut(s)	460, 683
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	255, 342
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	7 cut(s)	25, 105, 343, 353, 623, 674, 690
SfaNI	GCATC	3 cut(s)	492, 788, 840
SfcI	CTRYAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	796
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	6 cut(s)	159, 194, 513, 625, 696, 766
SsiI	CCGC	4 cut(s)	186, 315, 354, 358
SspMI	CTAG	2 cut(s)	822, 892
StyD4I	CCNGG	2 cut(s)	253, 340
TaaI	ACNGT	2 cut(s)	136, 602
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	6 cut(s)	190, 259, 630, 725, 738, 783
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	6 cut(s)	159, 194, 513, 625, 696, 766
TatI	WGTACW	2 cut(s)	458, 681
TauI	GCSGC	3 cut(s)	188, 357, 360
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	2 cut(s)	811, 820
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	6 cut(s)	28, 519, 666, 669, 788, 809
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	285, 742, 779
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	811, 820
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	625, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	2 cut(s)	822, 892
ZrmI	AGTACT	2 cut(s)	460, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.