Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010644

Physical Location & Seq

Genomic Coordinates Reverse (-)

2364438 .. 2366937

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG033000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCCCAGGAGGAGGAAGACCTCATTATCCGAATGCATAAGCTTCTTGGCAACCGTTGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACGGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAACAACACCGCCTGCTACTGCCCCGCACCGGCACCTGGAGGCCGGCGCGGCTGCAAAAGAAAAACCAATGATCATGACCACTACTCAGACGATACTCATCACCATCAAGACAACTGCCAATGTAGTAACAAAAGGAGCAAAATCATCAGCAGTACTGAAACAACTAAGACCGAAAGCATCACTCGTGAAGAGGAACCGAAATATGGAATTAGCAGCAAAGAGGACGATCAAAGTAGTAGTAGTATCATGAGCACTATGACAGCAACAAGTTACCCATACTGGATGGGTGACTACAGTAGTAACACAGATCAGAGCTTGAATTTCGACTACGCAGACATAGACCATCAGTATTCGCCAAGCAGCAGCTGGGTTCAGTACTACCTGCCTACAATTACAAACAACAATGCAACATCGTCGTCAACATTTGTGTTCGATGACGAGCCTTTCATTGCCTATATGGATTCTTTTCTCTTGCTCGAGGCAGCATTTGGATGCACCAGTGCTGCCACTGCTACTAGTGAGGGAATGCAATCATCAGTTATGATGCCATTATCATCTGCTAATGATCCTCATTCCCCACACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.02

Weight (kDa)

5.17

Isoelectric Point (pI)

73.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 43	2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 46	1.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52600
fragaria_vesca	FvH4_1g02690 FvH4_1g02690 FvH4_1g02690
malus_domestica	MD02G1027500.v1.1 MD15G1168900.v1.1
prunus_persica	Prupe.7G247600_v2.0.a1
pyrus_communis	pycom02g02240 pycom15g15060
rosa_chinensis	RchiOBHm_Chr2g0087781
rosa_laevigata	RLG00000015898
rosa_multiflora	Rmu_co8499051.1_g000001 Rmu_sc0021871.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153240
rosa_rugosa	Rorug01G0478700
rosa_samantha	Rh2AG033000 Rh2BG032100 Rh2CG032800 Rh2DG032600
rosa_wichuraiana	Rw2G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	144, 159, 183
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	2 cut(s)	289, 512
AfiI	CCNNNNNNNGG	4 cut(s)	13, 163, 170, 338
AgsI	TTSAA	2 cut(s)	130, 454
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	6, 82, 169
AluBI	AGCT	3 cut(s)	43, 450, 501
AluI	AGCT	3 cut(s)	43, 450, 501
Alw21I	GWGCWC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	695
AlwNI	CAGNNNCTG	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	6 cut(s)	186, 348, 495, 498, 617, 638
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	227, 434
AvaI	CYCGRG	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	6 cut(s)	173, 360, 507, 510, 625, 629
BccI	CCATC	3 cut(s)	246, 412, 486
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	3 cut(s)	8, 84, 171
BclI	TGATCA	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	2 cut(s)	651, 721
BfmI	CTRYAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	7 cut(s)	184, 187, 349, 496, 499, 618, 639
BlsI	GCNGC	7 cut(s)	185, 188, 350, 497, 500, 619, 640
BmcAI	AGTACT	2 cut(s)	289, 512
Bme1390I	CCNGG	3 cut(s)	8, 84, 171
BmeT110I	CYCGRG	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	168, 330
BmrFI	CCNGG	3 cut(s)	8, 84, 171
BmsI	GCATC	3 cut(s)	321, 617, 669
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 163, 170, 338
Bse118I	RCCGGY	2 cut(s)	163, 177
Bse1I	ACTGG	3 cut(s)	119, 419, 633
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	8, 84, 171
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	423, 632
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	4 cut(s)	13, 163, 170, 338
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	119, 419, 633
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	6 cut(s)	173, 360, 507, 510, 625, 629
BseYI	CCCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	164, 178
BslI	CCNNNNNNNGG	4 cut(s)	13, 163, 170, 338
BsmI	GAATGC	2 cut(s)	39, 666
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	205, 361, 442, 700
BspACI	CCGC	3 cut(s)	144, 159, 183
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	2 cut(s)	208, 381
BspLI	GGNNCC	2 cut(s)	168, 330
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	2 cut(s)	163, 177
BsrI	ACTGG	3 cut(s)	119, 419, 633
BssAI	RCCGGY	2 cut(s)	163, 177
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	205, 361, 442, 700
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	8, 84, 171
Bst4CI	ACNGT	2 cut(s)	56, 431
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	148, 179
BstDEI	CTNAG	2 cut(s)	220, 300
BstF5I	GGATG	2 cut(s)	423, 632
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	208, 364, 445, 703
BstMBI	GATC	4 cut(s)	205, 361, 442, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 644
BstNI	CCWGG	3 cut(s)	8, 84, 171
BstSCI	CCNGG	3 cut(s)	6, 82, 169
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	6 cut(s)	173, 360, 507, 510, 625, 629
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	423, 632
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	3 cut(s)	62, 640, 642
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	148, 179
CaiI	CAGNNNCTG	1 cut(s)	501
CciI	TCATGA	2 cut(s)	208, 381
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	163, 177
Csp6I	GTAC	2 cut(s)	288, 511
CviAII	CATG	2 cut(s)	209, 382
CviJI	RGCY	7 cut(s)	43, 79, 177, 186, 450, 501, 577
CviKI_1	RGCY	7 cut(s)	43, 79, 177, 186, 450, 501, 577
CviQI	GTAC	2 cut(s)	288, 511
DdeI	CTNAG	2 cut(s)	220, 300
DpnI	GATC	4 cut(s)	207, 363, 444, 702
DpnII	GATC	4 cut(s)	205, 361, 442, 700
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	611
EcoRII	CCWGG	3 cut(s)	6, 82, 169
EcoT22I	ATGCAT	1 cut(s)	39
FaeI	CATG	2 cut(s)	212, 385
FatI	CATG	2 cut(s)	208, 381
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	7 cut(s)	184, 187, 349, 496, 499, 618, 639
FokI	GGATG	2 cut(s)	430, 639
Fsp4HI	GCNGC	7 cut(s)	184, 187, 349, 496, 499, 618, 639
FspBI	CTAG	2 cut(s)	651, 721
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	7 cut(s)	184, 187, 349, 496, 499, 618, 639
GsaI	CCCAGC	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	164, 178
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	212, 385
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	2 cut(s)	164, 178
HphI	GGTGA	2 cut(s)	227, 434
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	32, 223, 447
Hpy188III	TCNNGA	4 cut(s)	209, 242, 320, 382
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	56, 431
HpyCH4V	TGCA	5 cut(s)	37, 189, 542, 630, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 644
HpyF3I	CTNAG	2 cut(s)	220, 300
Hsp92II	CATG	2 cut(s)	212, 385
HspAI	GCGC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	205, 361, 442, 700
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	6 cut(s)	173, 360, 507, 510, 625, 629
LweI	GCATC	3 cut(s)	321, 617, 669
MaeI	CTAG	2 cut(s)	651, 721
MaeIII	GTNAC	5 cut(s)	60, 260, 404, 422, 434
MalI	GATC	4 cut(s)	207, 363, 444, 702
MboI	GATC	4 cut(s)	205, 361, 442, 700
MboII	GAAGA	3 cut(s)	29, 118, 335
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	342, 454, 525
MnlI	CCTC	9 cut(s)	4, 7, 32, 167, 319, 349, 607, 649, 714
Mph1103I	ATGCAT	1 cut(s)	39
MroNI	GCCGGC	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	2 cut(s)	164, 178
MspR9I	CCNGG	3 cut(s)	8, 84, 171
Mva1269I	GAATGC	2 cut(s)	39, 666
MvaI	CCWGG	3 cut(s)	8, 84, 171
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	183, 644
NaeI	GCCGGC	1 cut(s)	179
NdeII	GATC	4 cut(s)	205, 361, 442, 700
NgoMIV	GCCGGC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	212, 385
NlaIV	GGNNCC	2 cut(s)	168, 330
NmuCI	GTSAC	2 cut(s)	60, 422
NsiI	ATGCAT	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	611
PagI	TCATGA	2 cut(s)	208, 381
PctI	GAATGC	2 cut(s)	39, 666
PdiI	GCCGGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	7 cut(s)	185, 188, 350, 497, 500, 619, 640
Psp6I	CCWGG	3 cut(s)	6, 82, 169
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	3 cut(s)	6, 82, 169
PspN4I	GGNNCC	2 cut(s)	168, 330
PspXI	VCTCGAGB	1 cut(s)	611
PstNI	CAGNNNCTG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	289, 512
RsaNI	GTAC	2 cut(s)	288, 511
RseI	CAYNNNNRTG	1 cut(s)	625
SatI	GCNGC	7 cut(s)	184, 187, 349, 496, 499, 618, 639
Sau3AI	GATC	4 cut(s)	205, 361, 442, 700
ScaI	AGTACT	2 cut(s)	289, 512
ScrFI	CCNGG	3 cut(s)	8, 84, 171
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	6 cut(s)	24, 45, 172, 452, 503, 519
SfaNI	GCATC	3 cut(s)	321, 617, 669
SfcI	CTRYAG	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	3 cut(s)	342, 454, 525
SsiI	CCGC	3 cut(s)	144, 159, 183
SspMI	CTAG	2 cut(s)	651, 721
StyD4I	CCNGG	3 cut(s)	6, 82, 169
TaaI	ACNGT	2 cut(s)	56, 431
TaqI	TCGA	4 cut(s)	88, 459, 567, 612
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	342, 454, 525
TatI	WGTACW	2 cut(s)	287, 510
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	3 cut(s)	69, 640, 649
TseFI	GTSAC	2 cut(s)	60, 422
TseI	GCWGC	6 cut(s)	186, 348, 495, 498, 617, 638
Tsp45I	GTSAC	2 cut(s)	60, 422
TspDTI	ATGAA	2 cut(s)	114, 571
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	69, 640, 649
XapI	RAATTY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XhoI	CTCGAG	1 cut(s)	611
XspI	CTAG	2 cut(s)	651, 721
ZrmI	AGTACT	2 cut(s)	289, 512
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.