AT5G54180
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
21988457 .. 21990393
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54180.1

Sequence Viewer

Length: 1503 bp
ATGGTGATCTTATCTCTCGTCTCTTGTTCCTTCTCCGTTTTCTCACCGCCGATTAGTCTCCGGCTTCATCTCCCGCCGGTAACTTCTCTCTGCTCCCATGGAACCTTCCCTGCTTCTTCTACATTTCGGTCTCAGCTACAACCATTGCTTATCAGCTGCTTAAATCATCGAGAACCTGCTTTAACTTTCCGATGTAGCTGCCTTAGCTCTCCGATTGAATCCGGAAGTCAAATTGAATCTCTGTTTTCGTTATTCCGAGATATTGGGTTTATAGAAGAAGAAACTGAGATGATTTTAGCGAAGAACCCAGATATAAAGTCGACATCTTTGGATAAAATCGGTGCTCGTGTTGCTTCTCTTCAGTCTCTGAAAATCAATGGCTTCCCGCTTCAGGGTTTGATAGCTAAGTGCCCTAATTTATTGACTTCAGAAGAATTTGATCTCGTTATTAGTTTCTTAGTTGATGAACTTGAAGGAAGGCTTGATCCTGAATTAGTTGAGCGCTTACTCTCTGTGGTAGACACATCTATCTTGCTTAGTTTTAATCAGAAGGTGAGATTGCTTCTCCTCCATGGGATACCTAAAGAAAAGATCTCTCATGTATTGAACAAAGTGTACCTAAATAAATTGCTGTATCAGAAATCAGTTGAAGATATTGAGAGATTGATTAGTTTCTTGGAACCTTTTGGTGGAATTGGTATAATTGCTAGGCGGCCAGTGATTCTCAATAGTGACTTGGATAGTCAGTTGATTCCTAGGGTTGATTTCATTAGGAATCTAAGCGGGGAAGACGATTTCGCTACTGGAACGGTGCTACGTAGACTTCCTGCCATATTGAGTTATAGTGTTGAGCATATGAACGGCCAAGTAGAGTTTCTCAAGTCTTTTGCTGGCTTGACGAGTGAGCAAGTGTTTAAGATTGTTCATGTGTTCCCTAATGTTATCAGCACTAGTAAAGAGAGGAAACTGCGCCCGAGGATAGAGTTTCTGAAGGAATGCGGCTTTGATTCCCCCGGCATGTTCAAATTCTTGAGTAAAGCACCATTGATTTTAGCTCTATCCGAAAATAATCTCTCGCACAAACTCGGTTTTCTGGTGAAGATTGGATATAAGCATAGAACAAAGGAACTGGCCTTTGCGATGGGAGCTGTGACCAGAACAAGCTCTGACAATATGCAGAGGGTTATTGGACTGTACTTGAGTTATGGTCTTTCATTCGAAGACATTCTAGCAATGAGCACAAAACATCCTCAAGTCCTGCAGTATAATTATACTTCTTTAGAGGAAAAACTGGAGTATTTGATCGAGTACATGGGTCGTGAAGTCGAAGAACTTCTTGCATTCCCTGCATTTCTTGGATACAAGCTTGATAGCAGGATCAAGCATCGGTATGAAGAAAAGTTGAAGAGCAGAGGTGAGAACATGTCTCTTAACAAGCTTTTGACAGTATCAGCTGAAAGATTCTCTAAGGCGGCTGATAATATCGAAATGATTTGTTTATGA

Protein Analysis

500

Amino Acids

56.35

Weight (kDa)

7.16

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 83 - 332 2.5e-19 mTERF
mTERF PF02536 320 - 488 4.2e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014181)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccI GTMKAC 3 cut(s) 320, 519, 820
AccIII TCCGGA 1 cut(s) 221
AciI CCGC 7 cut(s) 47, 74, 386, 712, 783, 999, 1472
AclWI GGATC 2 cut(s) 479, 1385
AcoI YGGCCR 2 cut(s) 713, 862
AcsI RAATTY 2 cut(s) 434, 1025
AcuI CTGAAG 4 cut(s) 344, 374, 411, 1010
AfaI GTAC 3 cut(s) 617, 1196, 1310
AfeI AGCGCT 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 391, 392, 689
AflIII ACRYGT 1 cut(s) 1422
AgsI TTSAA 7 cut(s) 218, 236, 473, 607, 650, 1024, 1405
AhlI ACTAGT 1 cut(s) 950
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
Alw21I GWGCWC 2 cut(s) 346, 1241
Alw26I GTCTC 5 cut(s) 25, 62, 135, 369, 1431
AlwI GGATC 2 cut(s) 479, 1385
AlwNI CAGNNNCTG 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 973
Aor13HI TCCGGA 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 503
AoxI GGCC 3 cut(s) 713, 862, 1131
ApeKI GCWGC 2 cut(s) 156, 198
ApoI RAATTY 2 cut(s) 434, 1025
Asp700I GAANNNNTTC 2 cut(s) 1224, 1332
AspA2I CCTAGG 1 cut(s) 755
AspLEI GCGC 2 cut(s) 504, 972
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 5 cut(s) 16, 36, 565, 1108, 1427
AsuII TTCGAA 1 cut(s) 1218
AvaI CYCGRG 1 cut(s) 973
AvrII CCTAGG 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 413
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 795, 1227
Bbv12I GWGCWC 2 cut(s) 346, 1241
BbvI GCAGC 2 cut(s) 143, 185
BccI CCATC 1 cut(s) 1135
BceAI ACGGC 1 cut(s) 877
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciVI GTATCC 2 cut(s) 570, 1352
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 5 cut(s) 25, 62, 135, 369, 1431
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 4 cut(s) 708, 756, 951, 1229
BfmI CTRYAG 1 cut(s) 1259
BfoI RGCGCY 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 184
BfuI GTATCC 2 cut(s) 570, 1352
BglII AGATCT 1 cut(s) 591
BisI GCNGC 5 cut(s) 157, 199, 713, 1000, 1473
BlnI CCTAGG 1 cut(s) 755
BlsI GCNGC 5 cut(s) 158, 200, 714, 1001, 1474
Bme1390I CCNGG 1 cut(s) 1014
BmeT110I CYCGRG 1 cut(s) 973
BmiI GGNNCC 2 cut(s) 103, 681
BmrFI CCNGG 1 cut(s) 1014
BmsI GCATC 1 cut(s) 1393
BpiI GAAGAC 2 cut(s) 795, 1227
BpmI CTGGAG 1 cut(s) 1313
Bpu10I CCTNAGC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 1218
BpuEI CTTGAG 4 cut(s) 863, 1051, 1219, 1236
BpuMI CCSGG 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 818
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 5 cut(s) 97, 571, 755, 974, 1012
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 392, 689
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 4 cut(s) 716, 808, 1134, 1296
Bse3DI GCAATG 2 cut(s) 143, 1239
BseAI TCCGGA 1 cut(s) 221
BseDI CCNNGG 5 cut(s) 97, 571, 755, 974, 1012
BseGI GGATG 1 cut(s) 1246
BseLI CCNNNNNNNGG 3 cut(s) 391, 392, 689
BseMI GCAATG 2 cut(s) 143, 1239
BseMII CTCAG 2 cut(s) 146, 276
BseNI ACTGG 4 cut(s) 716, 808, 1134, 1296
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 143, 185
BshFI GGCC 3 cut(s) 715, 864, 1133
BsiHKAI GWGCWC 2 cut(s) 346, 1241
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 4 cut(s) 61, 77, 222, 1014
BslI CCNNNNNNNGG 3 cut(s) 391, 392, 689
BsmAI GTCTC 5 cut(s) 25, 62, 135, 369, 1431
BsmBI CGTCTC 1 cut(s) 25
BsmI GAATGC 2 cut(s) 1001, 1340
BsnI GGCC 3 cut(s) 715, 864, 1133
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 973
Bsp119I TTCGAA 1 cut(s) 1218
Bsp1286I GDGCHC 3 cut(s) 346, 413, 1241
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
Bsp19I CCATGG 2 cut(s) 97, 571
BspACI CCGC 7 cut(s) 47, 74, 386, 712, 783, 999, 1472
BspANI GGCC 3 cut(s) 715, 864, 1133
BspCNI CTCAG 2 cut(s) 145, 277
BspEI TCCGGA 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 103, 681
BspMAI CTGCAG 1 cut(s) 1263
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 479, 1385
BspQI GCTCTTC 1 cut(s) 1400
BspT104I TTCGAA 1 cut(s) 1218
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 143, 1239
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 4 cut(s) 716, 808, 1134, 1296
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 5 cut(s) 97, 571, 755, 974, 1012
BssMI GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 3 cut(s) 97, 571, 755
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 811, 1194, 1447
Bst6I CTCTTC 2 cut(s) 363, 1400
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstBAI YACGTR 1 cut(s) 818
BstBI TTCGAA 1 cut(s) 1218
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 8 cut(s) 132, 203, 285, 405, 457, 536, 779, 1467
BstDSI CCRYGG 2 cut(s) 97, 571
BstF5I GGATG 1 cut(s) 1246
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 2 cut(s) 504, 972
BstKTI GATC 6 cut(s) 9, 442, 487, 594, 1305, 1380
BstMAI GTCTC 5 cut(s) 25, 62, 135, 369, 1431
BstMBI GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 204, 350, 1145, 1346
BstNSI RCATGY 2 cut(s) 1021, 1426
BstSCI CCNGG 1 cut(s) 1012
BstSFI CTRYAG 1 cut(s) 1259
BstSLI GKGCMC 1 cut(s) 413
BstSNI TACGTA 1 cut(s) 818
BstV1I GCAGC 2 cut(s) 143, 185
BstV2I GAAGAC 2 cut(s) 795, 1227
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BsuI GTATCC 2 cut(s) 570, 1352
BsuRI GGCC 3 cut(s) 715, 864, 1133
BtgI CCRYGG 2 cut(s) 97, 571
BtgZI GCGATG 1 cut(s) 1154
BtsCI GGATG 1 cut(s) 1246
BtsIMutI CAGTG 1 cut(s) 723
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 892
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 2 cut(s) 504, 972
Cfr10I RCCGGY 1 cut(s) 76
Csp6I GTAC 3 cut(s) 616, 1195, 1309
CviAII CATG 7 cut(s) 98, 572, 599, 926, 1018, 1312, 1423
CviQI GTAC 3 cut(s) 616, 1195, 1309
DdeI CTNAG 8 cut(s) 132, 203, 285, 405, 457, 536, 779, 1467
DpnI GATC 6 cut(s) 8, 441, 486, 593, 1304, 1379
DpnII GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
EaeI YGGCCR 2 cut(s) 713, 862
Eam1104I CTCTTC 2 cut(s) 363, 1400
EarI CTCTTC 2 cut(s) 363, 1400
Eco105I TACGTA 1 cut(s) 818
Eco130I CCWWGG 3 cut(s) 97, 571, 755
Eco31I GGTCTC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 503
Eco57I CTGAAG 4 cut(s) 344, 374, 411, 1010
Eco88I CYCGRG 1 cut(s) 973
EcoT14I CCWWGG 3 cut(s) 97, 571, 755
ErhI CCWWGG 3 cut(s) 97, 571, 755
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 7 cut(s) 101, 575, 602, 929, 1021, 1315, 1426
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 1320, 1352
FatI CATG 7 cut(s) 97, 571, 598, 925, 1017, 1311, 1422
FauI CCCGC 3 cut(s) 81, 393, 776
FauNDI CATATG 1 cut(s) 855
FblI GTMKAC 3 cut(s) 320, 519, 820
Fnu4HI GCNGC 5 cut(s) 157, 199, 713, 1000, 1473
FokI GGATG 1 cut(s) 1233
Fsp4HI GCNGC 5 cut(s) 157, 199, 713, 1000, 1473
FspBI CTAG 4 cut(s) 708, 756, 951, 1229
GlaI GCGC 2 cut(s) 503, 971
GluI GCNGC 5 cut(s) 157, 199, 713, 1000, 1473
GsuI CTGGAG 1 cut(s) 1313
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 3 cut(s) 715, 864, 1133
HapII CCGG 4 cut(s) 61, 77, 222, 1014
HhaI GCGC 2 cut(s) 504, 972
Hin1II CATG 7 cut(s) 101, 575, 602, 929, 1021, 1315, 1426
Hin6I GCGC 2 cut(s) 502, 970
HinP1I GCGC 2 cut(s) 502, 970
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 2 cut(s) 1364, 1436
HinfI GANTC 7 cut(s) 218, 236, 721, 751, 775, 1007, 1461
HpaII CCGG 4 cut(s) 61, 77, 222, 1014
HphI GGTGA 5 cut(s) 16, 36, 565, 1108, 1427
Hpy166II GTNNAC 4 cut(s) 321, 520, 616, 821
Hpy188III TCNNGA 5 cut(s) 170, 222, 488, 1030, 1319
Hpy8I GTNNAC 4 cut(s) 321, 520, 616, 821
HpyAV CCTTC 6 cut(s) 40, 115, 467, 471, 544, 985
HpyCH4III ACNGT 3 cut(s) 811, 1194, 1447
HpyCH4IV ACGT 1 cut(s) 817
HpyCH4V TGCA 4 cut(s) 1177, 1261, 1340, 1349
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 350, 1145, 1346
HpyF3I CTNAG 8 cut(s) 132, 203, 285, 405, 457, 536, 779, 1467
HpySE526I ACGT 1 cut(s) 817
Hsp92II CATG 7 cut(s) 101, 575, 602, 929, 1021, 1315, 1426
HspAI GCGC 2 cut(s) 502, 970
Kpn2I TCCGGA 1 cut(s) 221
Kzo9I GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
LguI GCTCTTC 1 cut(s) 1400
LmnI GCTCC 2 cut(s) 98, 1145
Lsp1109I GCAGC 2 cut(s) 143, 185
LweI GCATC 1 cut(s) 1393
MaeI CTAG 4 cut(s) 708, 756, 951, 1229
MaeII ACGT 1 cut(s) 817
MaeIII GTNAC 3 cut(s) 79, 731, 1150
MalI GATC 6 cut(s) 8, 441, 486, 593, 1304, 1379
MboI GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 3 cut(s) 346, 413, 1241
MluCI AATT 9 cut(s) 231, 415, 434, 491, 626, 693, 702, 1025, 1267
MnlI CCTC 7 cut(s) 578, 954, 969, 1173, 1260, 1276, 1406
MroI TCCGGA 1 cut(s) 221
MroXI GAANNNNTTC 2 cut(s) 1224, 1332
MseI TTAA 5 cut(s) 161, 182, 543, 915, 1431
MslI CAYNNNNRTG 1 cut(s) 1389
MspA1I CMGCKG 2 cut(s) 156, 1454
MspI CCGG 4 cut(s) 61, 77, 222, 1014
MspR9I CCNGG 1 cut(s) 1014
Mva1269I GAATGC 2 cut(s) 1001, 1340
MwoI GCNNNNNNNGC 4 cut(s) 204, 350, 1145, 1346
NciI CCSGG 1 cut(s) 1014
NcoI CCATGG 2 cut(s) 97, 571
NdeI CATATG 1 cut(s) 855
NdeII GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
NlaIII CATG 7 cut(s) 101, 575, 602, 929, 1021, 1315, 1426
NlaIV GGNNCC 2 cut(s) 103, 681
NmuCI GTSAC 2 cut(s) 731, 1150
NspI RCATGY 2 cut(s) 1021, 1426
NspV TTCGAA 1 cut(s) 1218
PciI ACATGT 1 cut(s) 1422
PciSI GCTCTTC 1 cut(s) 1400
PctI GAATGC 2 cut(s) 1001, 1340
PdmI GAANNNNTTC 2 cut(s) 1224, 1332
PfeI GAWTC 7 cut(s) 218, 236, 721, 751, 775, 1007, 1461
PkrI GCNGC 5 cut(s) 158, 200, 714, 1001, 1474
Ppu21I YACGTR 1 cut(s) 818
PscI ACATGT 1 cut(s) 1422
PspN4I GGNNCC 2 cut(s) 103, 681
PsrI GAACNNNNNNTAC 2 cut(s) 599, 631
PstI CTGCAG 1 cut(s) 1263
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 591
PvuII CAGCTG 2 cut(s) 156, 1454
RsaI GTAC 3 cut(s) 617, 1196, 1310
RsaNI GTAC 3 cut(s) 616, 1195, 1309
RseI CAYNNNNRTG 1 cut(s) 1389
SalI GTCGAC 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 1400
SaqAI TTAA 5 cut(s) 161, 182, 543, 915, 1431
SatI GCNGC 5 cut(s) 157, 199, 713, 1000, 1473
Sau3AI GATC 6 cut(s) 6, 439, 484, 591, 1302, 1377
ScrFI CCNGG 1 cut(s) 1014
SduI GDGCHC 3 cut(s) 346, 413, 1241
SfaNI GCATC 1 cut(s) 1393
SfcI CTRYAG 1 cut(s) 1259
SfuI TTCGAA 1 cut(s) 1218
SmiMI CAYNNNNRTG 1 cut(s) 1389
SmlI CTYRAG 4 cut(s) 878, 1030, 1198, 1251
SmoI CTYRAG 4 cut(s) 878, 1030, 1198, 1251
SnaBI TACGTA 1 cut(s) 818
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 9 cut(s) 231, 415, 434, 491, 626, 693, 702, 1025, 1267
SsiI CCGC 7 cut(s) 47, 74, 386, 712, 783, 999, 1472
SspMI CTAG 4 cut(s) 708, 756, 951, 1229
StyD4I CCNGG 1 cut(s) 1012
StyI CCWWGG 3 cut(s) 97, 571, 755
TaaI ACNGT 3 cut(s) 811, 1194, 1447
TaiI ACGT 1 cut(s) 820
TaqI TCGA 6 cut(s) 169, 320, 1218, 1305, 1326, 1485
TaqII GACCGA 1 cut(s) 117
TasI AATT 9 cut(s) 231, 415, 434, 491, 626, 693, 702, 1025, 1267
TatI WGTACW 2 cut(s) 1194, 1308
TauI GCSGC 3 cut(s) 715, 1002, 1475
TfiI GAWTC 7 cut(s) 218, 236, 721, 751, 775, 1007, 1461
Tru1I TTAA 5 cut(s) 161, 182, 543, 915, 1431
Tru9I TTAA 5 cut(s) 161, 182, 543, 915, 1431
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 2 cut(s) 731, 1150
TseI GCWGC 2 cut(s) 156, 198
Tsp45I GTSAC 2 cut(s) 731, 1150
TspDTI ATGAA 7 cut(s) 56, 480, 757, 872, 914, 1203, 1407
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 723
XapI RAATTY 2 cut(s) 434, 1025
XceI RCATGY 2 cut(s) 1021, 1426
XmaJI CCTAGG 1 cut(s) 755
XmiI GTMKAC 3 cut(s) 320, 519, 820
XmnI GAANNNNTTC 2 cut(s) 1224, 1332
XspI CTAG 4 cut(s) 708, 756, 951, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.