mTERF
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54180 |
| fragaria_vesca | FvH4_7g32910 FvH4_7g32910 |
| prunus_persica | Prupe.2G318700_v2.0.a1 |
| pyrus_communis | pycom07g27130 |
| rosa_chinensis | RchiOBHm_Chr1g0382851 |
| rosa_laevigata | RLG00000026154 |
| rosa_multiflora | Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00277840 |
| rosa_rugosa | Rorug01G0436800 |
| rosa_samantha | Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900 |
| rosa_wichuraiana | Rw1G041000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 561 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1244 |
| AatII | GACGTC | 1 cut(s) | 338 |
| AccII | CGCG | 1 cut(s) | 585 |
| AccIII | TCCGGA | 1 cut(s) | 592 |
| AciI | CCGC | 3 cut(s) | 237, 585, 1265 |
| AclWI | GGATC | 3 cut(s) | 446, 870, 1168 |
| AcsI | RAATTY | 2 cut(s) | 427, 929 |
| AcuI | CTGAAG | 1 cut(s) | 1022 |
| AcyI | GRCGYC | 2 cut(s) | 335, 724 |
| AfaI | GTAC | 3 cut(s) | 882, 1280, 1313 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 182, 246, 325, 952 |
| AgsI | TTSAA | 5 cut(s) | 373, 691, 928, 1079, 1447 |
| AjnI | CCWGG | 1 cut(s) | 1400 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 86, 118, 731, 763 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 561, 593 |
| Alw26I | GTCTC | 4 cut(s) | 10, 508, 653, 746 |
| AlwI | GGATC | 3 cut(s) | 446, 870, 1168 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1273 |
| Aor13HI | TCCGGA | 1 cut(s) | 592 |
| AoxI | GGCC | 2 cut(s) | 874, 1353 |
| ApeKI | GCWGC | 5 cut(s) | 219, 505, 527, 1148, 1151 |
| ApoI | RAATTY | 2 cut(s) | 427, 929 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 805, 837 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 120 |
| AspLEI | GCGC | 1 cut(s) | 1294 |
| AspS9I | GGNCC | 2 cut(s) | 191, 874 |
| AsuC2I | CCSGG | 1 cut(s) | 501 |
| AsuHPI | GGTGA | 5 cut(s) | 226, 406, 637, 1123, 1210 |
| AsuII | TTCGAA | 1 cut(s) | 1022 |
| AvaII | GGWCC | 1 cut(s) | 191 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1262, 1295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1295, 1327 |
| BbsI | GAAGAC | 2 cut(s) | 247, 1086 |
| BbvCI | CCTCAGC | 3 cut(s) | 441, 509, 660 |
| BbvI | GCAGC | 5 cut(s) | 231, 517, 539, 1160, 1163 |
| BccI | CCATC | 4 cut(s) | 88, 383, 736, 1300 |
| BciT130I | CCWGG | 1 cut(s) | 1402 |
| BclI | TGATCA | 3 cut(s) | 411, 1044, 1317 |
| BcnI | CCSGG | 1 cut(s) | 501 |
| BcoDI | GTCTC | 4 cut(s) | 10, 508, 653, 746 |
| BfaI | CTAG | 4 cut(s) | 357, 938, 1064, 1170 |
| BfmI | CTRYAG | 1 cut(s) | 1274 |
| BisI | GCNGC | 5 cut(s) | 220, 506, 528, 1149, 1152 |
| BlsI | GCNGC | 5 cut(s) | 221, 507, 529, 1150, 1153 |
| BmcAI | AGTACT | 1 cut(s) | 1313 |
| Bme1390I | CCNGG | 2 cut(s) | 501, 1402 |
| Bme18I | GGWCC | 1 cut(s) | 191 |
| BmgT120I | GGNCC | 2 cut(s) | 191, 874 |
| BmiI | GGNNCC | 2 cut(s) | 193, 765 |
| BmrFI | CCNGG | 2 cut(s) | 501, 1402 |
| BmrI | ACTGGG | 1 cut(s) | 191 |
| BmsI | GCATC | 1 cut(s) | 1270 |
| BmuI | ACTGGG | 1 cut(s) | 191 |
| BpiI | GAAGAC | 2 cut(s) | 247, 1086 |
| BpmI | CTGGAG | 1 cut(s) | 1316 |
| Bpu10I | CCTNAGC | 3 cut(s) | 441, 509, 660 |
| Bpu14I | TTCGAA | 1 cut(s) | 1022 |
| BpuEI | CTTGAG | 3 cut(s) | 515, 635, 1234 |
| BpuMI | CCSGG | 1 cut(s) | 501 |
| BsaHI | GRCGYC | 2 cut(s) | 335, 724 |
| BsaI | GGTCTC | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 2 cut(s) | 500, 1369 |
| BsaWI | WCCGGW | 2 cut(s) | 229, 592 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 182, 246, 325, 952 |
| Bse1I | ACTGG | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 2 cut(s) | 1086, 1161 |
| BseAI | TCCGGA | 1 cut(s) | 592 |
| BseBI | CCWGG | 1 cut(s) | 1402 |
| BseDI | CCNNGG | 2 cut(s) | 500, 1369 |
| BseGI | GGATG | 2 cut(s) | 728, 1261 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 182, 246, 325, 952 |
| BseMI | GCAATG | 2 cut(s) | 1086, 1161 |
| BseMII | CTCAG | 7 cut(s) | 21, 432, 500, 651, 770, 777, 1461 |
| BseNI | ACTGG | 1 cut(s) | 186 |
| BseRI | GAGGAG | 4 cut(s) | 75, 458, 526, 611 |
| BseXI | GCAGC | 5 cut(s) | 231, 517, 539, 1160, 1163 |
| BseYI | CCCAGC | 1 cut(s) | 319 |
| Bsh1236I | CGCG | 1 cut(s) | 585 |
| BshFI | GGCC | 2 cut(s) | 876, 1355 |
| BsiSI | CCGG | 3 cut(s) | 230, 500, 593 |
| BslFI | GGGAC | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 182, 246, 325, 952 |
| BsmAI | GTCTC | 4 cut(s) | 10, 508, 653, 746 |
| BsmFI | GGGAC | 1 cut(s) | 262 |
| BsmI | GAATGC | 1 cut(s) | 1364 |
| BsnI | GGCC | 2 cut(s) | 876, 1355 |
| Bso31I | GGTCTC | 1 cut(s) | 10 |
| Bsp119I | TTCGAA | 1 cut(s) | 1022 |
| Bsp13I | TCCGGA | 1 cut(s) | 592 |
| Bsp1407I | TGTACA | 1 cut(s) | 880 |
| Bsp143I | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| BspACI | CCGC | 3 cut(s) | 237, 585, 1265 |
| BspANI | GGCC | 2 cut(s) | 876, 1355 |
| BspCNI | CTCAG | 7 cut(s) | 20, 433, 501, 652, 769, 778, 1462 |
| BspEI | TCCGGA | 1 cut(s) | 592 |
| BspFNI | CGCG | 1 cut(s) | 585 |
| BspHI | TCATGA | 2 cut(s) | 475, 1248 |
| BspLI | GGNNCC | 2 cut(s) | 193, 765 |
| BspMAI | CTGCAG | 1 cut(s) | 1278 |
| BspPI | GGATC | 3 cut(s) | 446, 870, 1168 |
| BspT104I | TTCGAA | 1 cut(s) | 1022 |
| BspTNI | GGTCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 2 cut(s) | 1086, 1161 |
| BsrGI | TGTACA | 1 cut(s) | 880 |
| BsrI | ACTGG | 1 cut(s) | 186 |
| BssECI | CCNNGG | 2 cut(s) | 500, 1369 |
| BssMI | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| BssNI | GRCGYC | 2 cut(s) | 335, 724 |
| Bst2UI | CCWGG | 1 cut(s) | 1402 |
| Bst4CI | ACNGT | 7 cut(s) | 204, 253, 695, 859, 885, 1283, 1462 |
| Bst6I | CTCTTC | 3 cut(s) | 26, 1338, 1409 |
| BstACI | GRCGYC | 2 cut(s) | 335, 724 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1273 |
| BstAUI | TGTACA | 1 cut(s) | 880 |
| BstBI | TTCGAA | 1 cut(s) | 1022 |
| BstC8I | GCNNGC | 3 cut(s) | 138, 762, 964 |
| BstDEI | CTNAG | 7 cut(s) | 7, 441, 509, 660, 756, 786, 1470 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstF5I | GGATG | 2 cut(s) | 728, 1261 |
| BstFNI | CGCG | 1 cut(s) | 585 |
| BstHHI | GCGC | 1 cut(s) | 1294 |
| BstKTI | GATC | 7 cut(s) | 414, 454, 865, 1047, 1163, 1320, 1510 |
| BstMAI | GTCTC | 4 cut(s) | 10, 508, 653, 746 |
| BstMBI | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 505, 1273, 1361 |
| BstNI | CCWGG | 1 cut(s) | 1402 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 2 cut(s) | 499, 1400 |
| BstSFI | CTRYAG | 1 cut(s) | 1274 |
| BstUI | CGCG | 1 cut(s) | 585 |
| BstV1I | GCAGC | 5 cut(s) | 231, 517, 539, 1160, 1163 |
| BstV2I | GAAGAC | 2 cut(s) | 247, 1086 |
| BstX2I | RGATCY | 1 cut(s) | 1160 |
| BstYI | RGATCY | 1 cut(s) | 1160 |
| BsuRI | GGCC | 2 cut(s) | 876, 1355 |
| BtsCI | GGATG | 2 cut(s) | 728, 1261 |
| BtsIMutI | CAGTG | 2 cut(s) | 783, 855 |
| Cac8I | GCNNGC | 3 cut(s) | 138, 762, 964 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1273 |
| CciI | TCATGA | 2 cut(s) | 475, 1248 |
| CfoI | GCGC | 1 cut(s) | 1294 |
| Cfr13I | GGNCC | 2 cut(s) | 191, 874 |
| CseI | GACGC | 2 cut(s) | 713, 971 |
| Csp6I | GTAC | 3 cut(s) | 881, 1279, 1312 |
| CviAII | CATG | 4 cut(s) | 113, 476, 878, 1249 |
| CviQI | GTAC | 3 cut(s) | 881, 1279, 1312 |
| DdeI | CTNAG | 7 cut(s) | 7, 441, 509, 660, 756, 786, 1470 |
| DpnI | GATC | 7 cut(s) | 413, 453, 864, 1046, 1162, 1319, 1509 |
| DpnII | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| DraI | TTTAAA | 1 cut(s) | 1480 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1244 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1244 |
| Eam1104I | CTCTTC | 3 cut(s) | 26, 1338, 1409 |
| EarI | CTCTTC | 3 cut(s) | 26, 1338, 1409 |
| Eco31I | GGTCTC | 1 cut(s) | 10 |
| Eco32I | GATATC | 1 cut(s) | 1030 |
| Eco47I | GGWCC | 1 cut(s) | 191 |
| Eco57I | CTGAAG | 1 cut(s) | 1022 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 1400 |
| EcoRV | GATATC | 1 cut(s) | 1030 |
| FaeI | CATG | 4 cut(s) | 116, 479, 881, 1252 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 477, 509 |
| FaqI | GGGAC | 1 cut(s) | 262 |
| FatI | CATG | 4 cut(s) | 112, 475, 877, 1248 |
| FbaI | TGATCA | 3 cut(s) | 411, 1044, 1317 |
| Fnu4HI | GCNGC | 5 cut(s) | 220, 506, 528, 1149, 1152 |
| FokI | GGATG | 2 cut(s) | 715, 1248 |
| Fsp4HI | GCNGC | 5 cut(s) | 220, 506, 528, 1149, 1152 |
| FspBI | CTAG | 4 cut(s) | 357, 938, 1064, 1170 |
| GlaI | GCGC | 1 cut(s) | 1293 |
| GluI | GCNGC | 5 cut(s) | 220, 506, 528, 1149, 1152 |
| GsaI | CCCAGC | 1 cut(s) | 323 |
| GsuI | CTGGAG | 1 cut(s) | 1316 |
| HaeIII | GGCC | 2 cut(s) | 876, 1355 |
| HapII | CCGG | 3 cut(s) | 230, 500, 593 |
| HgaI | GACGC | 2 cut(s) | 713, 971 |
| HhaI | GCGC | 1 cut(s) | 1294 |
| Hin1I | GRCGYC | 2 cut(s) | 335, 724 |
| Hin1II | CATG | 4 cut(s) | 116, 479, 881, 1252 |
| Hin6I | GCGC | 1 cut(s) | 1292 |
| HinP1I | GCGC | 1 cut(s) | 1292 |
| HincII | GTYRAC | 2 cut(s) | 435, 610 |
| HindII | GTYRAC | 2 cut(s) | 435, 610 |
| HindIII | AAGCTT | 2 cut(s) | 833, 1097 |
| HinfI | GANTC | 4 cut(s) | 344, 540, 628, 754 |
| HpaI | GTTAAC | 1 cut(s) | 435 |
| HpaII | CCGG | 3 cut(s) | 230, 500, 593 |
| HphI | GGTGA | 5 cut(s) | 226, 406, 637, 1123, 1210 |
| Hpy166II | GTNNAC | 2 cut(s) | 435, 610 |
| Hpy188I | TCNGA | 8 cut(s) | 426, 569, 768, 987, 1002, 1183, 1471, 1512 |
| Hpy188III | TCNNGA | 7 cut(s) | 476, 593, 688, 1042, 1213, 1249, 1334 |
| Hpy8I | GTNNAC | 2 cut(s) | 435, 610 |
| Hpy99I | CGWCG | 1 cut(s) | 585 |
| HpyAV | CCTTC | 5 cut(s) | 42, 99, 112, 997, 1427 |
| HpyCH4III | ACNGT | 7 cut(s) | 204, 253, 695, 859, 885, 1283, 1462 |
| HpyCH4IV | ACGT | 4 cut(s) | 335, 534, 612, 1515 |
| HpyCH4V | TGCA | 7 cut(s) | 200, 219, 842, 1091, 1192, 1276, 1364 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 505, 1273, 1361 |
| HpyF3I | CTNAG | 7 cut(s) | 7, 441, 509, 660, 756, 786, 1470 |
| HpySE526I | ACGT | 4 cut(s) | 335, 534, 612, 1515 |
| Hsp92I | GRCGYC | 2 cut(s) | 335, 724 |
| Hsp92II | CATG | 4 cut(s) | 116, 479, 881, 1252 |
| HspAI | GCGC | 1 cut(s) | 1292 |
| Kpn2I | TCCGGA | 1 cut(s) | 592 |
| Ksp22I | TGATCA | 3 cut(s) | 411, 1044, 1317 |
| KspAI | GTTAAC | 1 cut(s) | 435 |
| Kzo9I | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| LmnI | GCTCC | 3 cut(s) | 227, 769, 1057 |
| Lsp1109I | GCAGC | 5 cut(s) | 231, 517, 539, 1160, 1163 |
| LweI | GCATC | 1 cut(s) | 1270 |
| MaeI | CTAG | 4 cut(s) | 357, 938, 1064, 1170 |
| MaeII | ACGT | 4 cut(s) | 335, 534, 612, 1515 |
| MaeIII | GTNAC | 4 cut(s) | 171, 232, 348, 1373 |
| MalI | GATC | 7 cut(s) | 413, 453, 864, 1046, 1162, 1319, 1509 |
| MboI | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| MflI | RGATCY | 1 cut(s) | 1160 |
| MlyI | GAGTC | 1 cut(s) | 748 |
| MmeI | TCCRAC | 4 cut(s) | 256, 361, 529, 547 |
| MroI | TCCGGA | 1 cut(s) | 592 |
| MroXI | GAANNNNTTC | 1 cut(s) | 120 |
| MseI | TTAA | 6 cut(s) | 434, 908, 993, 1395, 1457, 1479 |
| MspA1I | CMGCKG | 3 cut(s) | 508, 659, 760 |
| MspI | CCGG | 3 cut(s) | 230, 500, 593 |
| MspR9I | CCNGG | 2 cut(s) | 501, 1402 |
| Mva1269I | GAATGC | 1 cut(s) | 1364 |
| MvaI | CCWGG | 1 cut(s) | 1402 |
| MvnI | CGCG | 1 cut(s) | 585 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 505, 1273, 1361 |
| NciI | CCSGG | 1 cut(s) | 501 |
| NdeII | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| NlaIII | CATG | 4 cut(s) | 116, 479, 881, 1252 |
| NlaIV | GGNNCC | 2 cut(s) | 193, 765 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| NspV | TTCGAA | 1 cut(s) | 1022 |
| PagI | TCATGA | 2 cut(s) | 475, 1248 |
| PctI | GAATGC | 1 cut(s) | 1364 |
| PdmI | GAANNNNTTC | 1 cut(s) | 120 |
| PfeI | GAWTC | 3 cut(s) | 344, 540, 628 |
| PkrI | GCNGC | 5 cut(s) | 221, 507, 529, 1150, 1153 |
| PleI | GAGTC | 1 cut(s) | 748 |
| PpsI | GAGTC | 1 cut(s) | 748 |
| PsiI | TTATAA | 1 cut(s) | 561 |
| Psp6I | CCWGG | 1 cut(s) | 1400 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspFI | CCCAGC | 1 cut(s) | 319 |
| PspGI | CCWGG | 1 cut(s) | 1400 |
| PspN4I | GGNNCC | 2 cut(s) | 193, 765 |
| PspPI | GGNCC | 2 cut(s) | 191, 874 |
| PstI | CTGCAG | 1 cut(s) | 1278 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1273 |
| PsuI | RGATCY | 1 cut(s) | 1160 |
| PvuII | CAGCTG | 3 cut(s) | 508, 659, 760 |
| RsaI | GTAC | 3 cut(s) | 882, 1280, 1313 |
| RsaNI | GTAC | 3 cut(s) | 881, 1279, 1312 |
| SaqAI | TTAA | 6 cut(s) | 434, 908, 993, 1395, 1457, 1479 |
| SatI | GCNGC | 5 cut(s) | 220, 506, 528, 1149, 1152 |
| Sau3AI | GATC | 7 cut(s) | 411, 451, 862, 1044, 1160, 1317, 1507 |
| Sau96I | GGNCC | 2 cut(s) | 191, 874 |
| ScaI | AGTACT | 1 cut(s) | 1313 |
| SchI | GAGTC | 1 cut(s) | 748 |
| ScrFI | CCNGG | 2 cut(s) | 501, 1402 |
| SfaNI | GCATC | 1 cut(s) | 1270 |
| SfcI | CTRYAG | 1 cut(s) | 1274 |
| SfuI | TTCGAA | 1 cut(s) | 1022 |
| SinI | GGWCC | 1 cut(s) | 191 |
| SmlI | CTYRAG | 3 cut(s) | 494, 650, 1213 |
| SmoI | CTYRAG | 3 cut(s) | 494, 650, 1213 |
| SsiI | CCGC | 3 cut(s) | 237, 585, 1265 |
| SspMI | CTAG | 4 cut(s) | 357, 938, 1064, 1170 |
| StyD4I | CCNGG | 2 cut(s) | 499, 1400 |
| TaaI | ACNGT | 7 cut(s) | 204, 253, 695, 859, 885, 1283, 1462 |
| TaiI | ACGT | 4 cut(s) | 338, 537, 615, 1518 |
| TaqI | TCGA | 2 cut(s) | 1022, 1341 |
| TatI | WGTACW | 3 cut(s) | 880, 1278, 1311 |
| TfiI | GAWTC | 3 cut(s) | 344, 540, 628 |
| Tru1I | TTAA | 6 cut(s) | 434, 908, 993, 1395, 1457, 1479 |
| Tru9I | TTAA | 6 cut(s) | 434, 908, 993, 1395, 1457, 1479 |
| TscAI | CASTG | 2 cut(s) | 790, 862 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 5 cut(s) | 219, 505, 527, 1148, 1151 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 6 cut(s) | 60, 129, 819, 930, 1422, 1455 |
| TspGWI | ACGGA | 3 cut(s) | 43, 95, 461 |
| TspRI | CASTG | 2 cut(s) | 790, 862 |
| VpaK11BI | GGWCC | 1 cut(s) | 191 |
| XapI | RAATTY | 2 cut(s) | 427, 929 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 185 |
| XmnI | GAANNNNTTC | 1 cut(s) | 120 |
| XspI | CTAG | 4 cut(s) | 357, 938, 1064, 1170 |
| ZraI | GACGTC | 1 cut(s) | 336 |
| ZrmI | AGTACT | 1 cut(s) | 1313 |