Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304207.1

Orthogroup ID

OG0014181

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 902

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 902 bp

gctcggattgagtgctttaattcagttggacttgatgggcttgtgctttccaatttgatcaccaaatgtccgaatttgttaactgctgaggagattgatccctttttgagttttgtccgtcatgatatggaagccaaaattgagccgggacagctgaggagactttttcgggcagcagacgttagattcttggtgggatttggtcataaggtaggattgcttgttcgtcgcggagttccggaggagaagattgttgatgttctcaacaaggtgaatctatacaaggcattgtgtctcaagtcagctgaggaaattgataggactatcacattcttgaaccgttttggtgggattgacttgattgtgaggcgtccatcgctactgaactatgacttggagactcagctggctccgagagttgagtttctcactgaggttagtggcggagatgaaaatgccacaggggttttgttggggaagcttcctgcaattttgagctacactgtggatcacacaaagggccatgtagggttgttgaggtcatttgctggtttaagtgatgaacagatattcaaattcttgctagttttccccaatgtggttagtgccagcagggagaggaaaatgcgtccgagaattaagtttctgaaggaatgtgggttgagttcgaatgatatctacaagttcttgatcaaagctccattgtttctaggcttgtcgtttgaagacaacattgcatataagcttgtgtttttggtgaagattgggtatagatatagaacaagggacatggcagcagcaatgggatctgccaccagaacaagctctgataatttgcaaagggtgatcgagttgttcttgagttatggtttttcgtgtgccgacattgttgtcatgagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

300

Amino Acids

33.66

Weight (kDa)

9.03

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54180
fragaria_vesca	FvH4_7g32910 FvH4_7g32910
prunus_persica	Prupe.2G318700_v2.0.a1
pyrus_communis	pycom07g27130
rosa_chinensis	RchiOBHm_Chr1g0382851
rosa_laevigata	RLG00000026154
rosa_multiflora	Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009
rosa_roxburghii	Rroxscaffold_4G00277840
rosa_rugosa	Rorug01G0436800
rosa_samantha	Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900
rosa_wichuraiana	Rw1G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	890
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	231, 444
AclWI	GGATC	3 cut(s)	92, 516, 814
AcsI	RAATTY	2 cut(s)	73, 575
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	337, 574, 725
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	8 cut(s)	154, 305, 406, 481, 498, 698, 745, 825
AluI	AGCT	8 cut(s)	154, 305, 406, 481, 498, 698, 745, 825
Alw26I	GTCTC	3 cut(s)	154, 299, 392
AlwI	GGATC	3 cut(s)	92, 516, 814
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	173, 794, 797
ApoI	RAATTY	2 cut(s)	73, 575
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	4 cut(s)	52, 283, 769, 856
AsuII	TTCGAA	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	732
BbvCI	CCTCAGC	3 cut(s)	87, 155, 306
BbvI	GCAGC	3 cut(s)	185, 806, 809
BccI	CCATC	2 cut(s)	29, 382
BclI	TGATCA	2 cut(s)	57, 690
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	154, 299, 392
BfaI	CTAG	2 cut(s)	584, 710
BisI	GCNGC	3 cut(s)	174, 795, 798
BlsI	GCNGC	3 cut(s)	175, 796, 799
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	732
Bpu10I	CCTNAGC	3 cut(s)	87, 155, 306
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	281, 880
BpuMI	CCSGG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse3DI	GCAATG	2 cut(s)	732, 807
BseAI	TCCGGA	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	2 cut(s)	732, 807
BseMII	CTCAG	5 cut(s)	78, 146, 297, 416, 423
BseRI	GAGGAG	3 cut(s)	104, 172, 257
BseXI	GCAGC	3 cut(s)	185, 806, 809
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	146, 239
BslFI	GGGAC	2 cut(s)	162, 800
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	3 cut(s)	154, 299, 392
BsmFI	GGGAC	2 cut(s)	162, 800
BsnI	GGCC	1 cut(s)	522
Bsp119I	TTCGAA	1 cut(s)	668
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
BspACI	CCGC	2 cut(s)	231, 444
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	5 cut(s)	79, 147, 298, 415, 424
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	121, 894
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	92, 516, 814
BspT104I	TTCGAA	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	732, 807
BssMI	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
BssNI	GRCGYC	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	341, 505
BstACI	GRCGYC	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	408, 610
BstDEI	CTNAG	5 cut(s)	87, 155, 306, 402, 432
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	6 cut(s)	60, 100, 511, 693, 809, 849
BstMAI	GTCTC	3 cut(s)	154, 299, 392
BstMBI	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 376
BstSCI	CCNGG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	185, 806, 809
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BsuRI	GGCC	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	429, 501
Cac8I	GCNNGC	2 cut(s)	408, 610
CciI	TCATGA	2 cut(s)	121, 894
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	2 cut(s)	359, 617
CviAII	CATG	4 cut(s)	122, 524, 790, 895
DdeI	CTNAG	5 cut(s)	87, 155, 306, 402, 432
DpnI	GATC	6 cut(s)	59, 99, 510, 692, 808, 848
DpnII	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
DrdI	GACNNNNNNGTC	1 cut(s)	890
DseDI	GACNNNNNNGTC	1 cut(s)	890
EciI	GGCGGA	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	676
FaeI	CATG	4 cut(s)	125, 527, 793, 898
FaqI	GGGAC	2 cut(s)	162, 800
FatI	CATG	4 cut(s)	121, 523, 789, 894
FbaI	TGATCA	2 cut(s)	57, 690
Fnu4HI	GCNGC	3 cut(s)	174, 795, 798
Fsp4HI	GCNGC	3 cut(s)	174, 795, 798
FspBI	CTAG	2 cut(s)	584, 710
GluI	GCNGC	3 cut(s)	174, 795, 798
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	146, 239
HgaI	GACGC	2 cut(s)	359, 617
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	125, 527, 793, 898
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	2 cut(s)	479, 743
HinfI	GANTC	3 cut(s)	186, 274, 400
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	146, 239
HphI	GGTGA	4 cut(s)	52, 283, 769, 856
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	6 cut(s)	6, 72, 414, 633, 648, 829
Hpy188III	TCNNGA	6 cut(s)	122, 239, 334, 688, 859, 895
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	2 cut(s)	341, 505
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	488, 737, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 376
HpyF3I	CTNAG	5 cut(s)	87, 155, 306, 402, 432
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	125, 527, 793, 898
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	2 cut(s)	57, 690
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
LmnI	GCTCC	2 cut(s)	415, 703
LpnPI	CCDG	9 cut(s)	159, 252, 392, 447, 498, 534, 598, 622, 829
Lsp1109I	GCAGC	3 cut(s)	185, 806, 809
MaeI	CTAG	2 cut(s)	584, 710
MaeII	ACGT	1 cut(s)	180
MalI	GATC	6 cut(s)	59, 99, 510, 692, 808, 848
MboI	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
MboII	GAAGA	3 cut(s)	259, 737, 772
MflI	RGATCY	1 cut(s)	806
MluCI	AATT	9 cut(s)	19, 52, 73, 138, 312, 489, 575, 636, 832
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	82, 150, 235, 301, 360, 427, 531, 612
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	4 cut(s)	18, 80, 554, 639
MspA1I	CMGCKG	3 cut(s)	154, 305, 406
MspI	CCGG	2 cut(s)	146, 239
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	151, 376
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
NlaIII	CATG	4 cut(s)	125, 527, 793, 898
NlaIV	GGNNCC	1 cut(s)	411
NspV	TTCGAA	1 cut(s)	668
PagI	TCATGA	2 cut(s)	121, 894
PfeI	GAWTC	2 cut(s)	186, 274
PkrI	GCNGC	3 cut(s)	175, 796, 799
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	806
PvuII	CAGCTG	3 cut(s)	154, 305, 406
SaqAI	TTAA	4 cut(s)	18, 80, 554, 639
SatI	GCNGC	3 cut(s)	174, 795, 798
Sau3AI	GATC	6 cut(s)	57, 97, 508, 690, 806, 846
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	296, 859
SmoI	CTYRAG	2 cut(s)	296, 859
Sse9I	AATT	9 cut(s)	19, 52, 73, 138, 312, 489, 575, 636, 832
SsiI	CCGC	2 cut(s)	231, 444
SspMI	CTAG	2 cut(s)	584, 710
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	341, 505
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	668, 849
TasI	AATT	9 cut(s)	19, 52, 73, 138, 312, 489, 575, 636, 832
TfiI	GAWTC	2 cut(s)	186, 274
Tru1I	TTAA	4 cut(s)	18, 80, 554, 639
Tru9I	TTAA	4 cut(s)	18, 80, 554, 639
TscAI	CASTG	2 cut(s)	436, 508
TseI	GCWGC	3 cut(s)	173, 794, 797
TspDTI	ATGAA	2 cut(s)	465, 576
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	436, 508
XapI	RAATTY	2 cut(s)	73, 575
XspI	CTAG	2 cut(s)	584, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.