mTERF
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54180 |
| fragaria_vesca | FvH4_7g32910 FvH4_7g32910 |
| prunus_persica | Prupe.2G318700_v2.0.a1 |
| pyrus_communis | pycom07g27130 |
| rosa_chinensis | RchiOBHm_Chr1g0382851 |
| rosa_laevigata | RLG00000026154 |
| rosa_multiflora | Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00277840 |
| rosa_rugosa | Rorug01G0436800 |
| rosa_samantha | Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900 |
| rosa_wichuraiana | Rw1G041000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 570 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| AatII | GACGTC | 1 cut(s) | 347 |
| AccII | CGCG | 1 cut(s) | 594 |
| AccIII | TCCGGA | 1 cut(s) | 601 |
| AciI | CCGC | 4 cut(s) | 246, 594, 807, 1274 |
| AclWI | GGATC | 3 cut(s) | 455, 879, 1177 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcsI | RAATTY | 2 cut(s) | 436, 938 |
| AcuI | CTGAAG | 1 cut(s) | 1031 |
| AcyI | GRCGYC | 2 cut(s) | 344, 733 |
| AfaI | GTAC | 2 cut(s) | 1289, 1322 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 191, 255, 961 |
| AgsI | TTSAA | 3 cut(s) | 700, 937, 1088 |
| AjnI | CCWGG | 1 cut(s) | 1409 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 95, 127, 180, 212, 740, 772 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 570, 602 |
| Alw26I | GTCTC | 4 cut(s) | 10, 517, 662, 755 |
| AlwI | GGATC | 3 cut(s) | 455, 879, 1177 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1282 |
| Aor13HI | TCCGGA | 1 cut(s) | 601 |
| AoxI | GGCC | 2 cut(s) | 118, 883 |
| ApeKI | GCWGC | 4 cut(s) | 228, 536, 1157, 1160 |
| ApoI | RAATTY | 2 cut(s) | 436, 938 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 129 |
| AspS9I | GGNCC | 1 cut(s) | 883 |
| AsuC2I | CCSGG | 1 cut(s) | 510 |
| AsuHPI | GGTGA | 5 cut(s) | 235, 415, 646, 1132, 1219 |
| AsuII | TTCGAA | 1 cut(s) | 1031 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1271, 1304 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BanII | GRGCYC | 1 cut(s) | 367 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1304, 1336 |
| BbsI | GAAGAC | 3 cut(s) | 188, 256, 1095 |
| BbvCI | CCTCAGC | 3 cut(s) | 450, 518, 669 |
| BbvI | GCAGC | 4 cut(s) | 240, 548, 1169, 1172 |
| BccI | CCATC | 3 cut(s) | 392, 745, 1309 |
| BciT130I | CCWGG | 1 cut(s) | 1411 |
| BclI | TGATCA | 2 cut(s) | 420, 1053 |
| BcnI | CCSGG | 1 cut(s) | 510 |
| BcoDI | GTCTC | 4 cut(s) | 10, 517, 662, 755 |
| BfaI | CTAG | 2 cut(s) | 947, 1073 |
| BfmI | CTRYAG | 1 cut(s) | 1283 |
| BisI | GCNGC | 4 cut(s) | 229, 537, 1158, 1161 |
| BlsI | GCNGC | 4 cut(s) | 230, 538, 1159, 1162 |
| BmcAI | AGTACT | 1 cut(s) | 1322 |
| Bme1390I | CCNGG | 2 cut(s) | 510, 1411 |
| BmgT120I | GGNCC | 1 cut(s) | 883 |
| BmiI | GGNNCC | 1 cut(s) | 774 |
| BmrFI | CCNGG | 2 cut(s) | 510, 1411 |
| BmrI | ACTGGG | 1 cut(s) | 200 |
| BmsI | GCATC | 1 cut(s) | 1279 |
| BmuI | ACTGGG | 1 cut(s) | 200 |
| BpiI | GAAGAC | 3 cut(s) | 188, 256, 1095 |
| Bpu10I | CCTNAGC | 3 cut(s) | 450, 518, 669 |
| Bpu14I | TTCGAA | 1 cut(s) | 1031 |
| BpuEI | CTTGAG | 2 cut(s) | 644, 1243 |
| BpuMI | CCSGG | 1 cut(s) | 510 |
| BsaHI | GRCGYC | 2 cut(s) | 344, 733 |
| BsaI | GGTCTC | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 2 cut(s) | 115, 1378 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 601 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 191, 255, 961 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 2 cut(s) | 1095, 1170 |
| BseAI | TCCGGA | 1 cut(s) | 601 |
| BseBI | CCWGG | 1 cut(s) | 1411 |
| BseDI | CCNNGG | 2 cut(s) | 115, 1378 |
| BseGI | GGATG | 1 cut(s) | 1270 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 191, 255, 961 |
| BseMI | GCAATG | 2 cut(s) | 1095, 1170 |
| BseMII | CTCAG | 7 cut(s) | 21, 441, 509, 660, 779, 786, 1470 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 4 cut(s) | 84, 467, 535, 620 |
| BseXI | GCAGC | 4 cut(s) | 240, 548, 1169, 1172 |
| Bsh1236I | CGCG | 1 cut(s) | 594 |
| BshFI | GGCC | 2 cut(s) | 120, 885 |
| BsiSI | CCGG | 3 cut(s) | 239, 509, 602 |
| BslFI | GGGAC | 3 cut(s) | 271, 525, 1163 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 191, 255, 961 |
| BsmAI | GTCTC | 4 cut(s) | 10, 517, 662, 755 |
| BsmFI | GGGAC | 3 cut(s) | 271, 525, 1163 |
| BsmI | GAATGC | 1 cut(s) | 1373 |
| BsnI | GGCC | 2 cut(s) | 120, 885 |
| Bso31I | GGTCTC | 1 cut(s) | 10 |
| Bsp119I | TTCGAA | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 1 cut(s) | 367 |
| Bsp13I | TCCGGA | 1 cut(s) | 601 |
| Bsp143I | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| BspACI | CCGC | 4 cut(s) | 246, 594, 807, 1274 |
| BspANI | GGCC | 2 cut(s) | 120, 885 |
| BspCNI | CTCAG | 7 cut(s) | 20, 442, 510, 661, 778, 787, 1471 |
| BspEI | TCCGGA | 1 cut(s) | 601 |
| BspFNI | CGCG | 1 cut(s) | 594 |
| BspHI | TCATGA | 2 cut(s) | 484, 1257 |
| BspLI | GGNNCC | 1 cut(s) | 774 |
| BspMAI | CTGCAG | 1 cut(s) | 1287 |
| BspPI | GGATC | 3 cut(s) | 455, 879, 1177 |
| BspT104I | TTCGAA | 1 cut(s) | 1031 |
| BspTNI | GGTCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 2 cut(s) | 1095, 1170 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssECI | CCNNGG | 2 cut(s) | 115, 1378 |
| BssMI | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| BssNI | GRCGYC | 2 cut(s) | 344, 733 |
| BssT1I | CCWWGG | 1 cut(s) | 1378 |
| Bst2UI | CCWGG | 1 cut(s) | 1411 |
| Bst4CI | ACNGT | 6 cut(s) | 213, 262, 704, 868, 1292, 1471 |
| Bst6I | CTCTTC | 3 cut(s) | 26, 1347, 1418 |
| BstACI | GRCGYC | 2 cut(s) | 344, 733 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1282 |
| BstBI | TTCGAA | 1 cut(s) | 1031 |
| BstC8I | GCNNGC | 3 cut(s) | 147, 771, 973 |
| BstDEI | CTNAG | 7 cut(s) | 7, 450, 518, 669, 765, 795, 1479 |
| BstDSI | CCRYGG | 1 cut(s) | 115 |
| BstEII | GGTNACC | 1 cut(s) | 241 |
| BstF5I | GGATG | 1 cut(s) | 1270 |
| BstFNI | CGCG | 1 cut(s) | 594 |
| BstKTI | GATC | 7 cut(s) | 423, 463, 874, 1056, 1172, 1212, 1519 |
| BstMAI | GTCTC | 4 cut(s) | 10, 517, 662, 755 |
| BstMBI | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 514, 739, 1282, 1370 |
| BstNI | CCWGG | 1 cut(s) | 1411 |
| BstPI | GGTNACC | 1 cut(s) | 241 |
| BstSCI | CCNGG | 2 cut(s) | 508, 1409 |
| BstSFI | CTRYAG | 1 cut(s) | 1283 |
| BstUI | CGCG | 1 cut(s) | 594 |
| BstV1I | GCAGC | 4 cut(s) | 240, 548, 1169, 1172 |
| BstV2I | GAAGAC | 3 cut(s) | 188, 256, 1095 |
| BstX2I | RGATCY | 1 cut(s) | 1169 |
| BstYI | RGATCY | 1 cut(s) | 1169 |
| BsuRI | GGCC | 2 cut(s) | 120, 885 |
| BtgI | CCRYGG | 1 cut(s) | 115 |
| BtgZI | GCGATG | 1 cut(s) | 723 |
| BtsCI | GGATG | 1 cut(s) | 1270 |
| BtsIMutI | CAGTG | 3 cut(s) | 792, 864, 1451 |
| Cac8I | GCNNGC | 3 cut(s) | 147, 771, 973 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1282 |
| CciI | TCATGA | 2 cut(s) | 484, 1257 |
| Cfr13I | GGNCC | 1 cut(s) | 883 |
| CseI | GACGC | 2 cut(s) | 722, 980 |
| Csp6I | GTAC | 2 cut(s) | 1288, 1321 |
| CviAII | CATG | 5 cut(s) | 122, 485, 887, 1153, 1258 |
| CviQI | GTAC | 2 cut(s) | 1288, 1321 |
| DdeI | CTNAG | 7 cut(s) | 7, 450, 518, 669, 765, 795, 1479 |
| DpnI | GATC | 7 cut(s) | 422, 462, 873, 1055, 1171, 1211, 1518 |
| DpnII | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| DraI | TTTAAA | 1 cut(s) | 1489 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 3 cut(s) | 26, 1347, 1418 |
| EarI | CTCTTC | 3 cut(s) | 26, 1347, 1418 |
| EciI | GGCGGA | 1 cut(s) | 822 |
| Eco130I | CCWWGG | 1 cut(s) | 1378 |
| Eco24I | GRGCYC | 1 cut(s) | 367 |
| Eco31I | GGTCTC | 1 cut(s) | 10 |
| Eco32I | GATATC | 1 cut(s) | 1039 |
| Eco57I | CTGAAG | 1 cut(s) | 1031 |
| Eco91I | GGTNACC | 1 cut(s) | 241 |
| EcoO65I | GGTNACC | 1 cut(s) | 241 |
| EcoRII | CCWGG | 1 cut(s) | 1409 |
| EcoRV | GATATC | 1 cut(s) | 1039 |
| EcoT14I | CCWWGG | 1 cut(s) | 1378 |
| EcoT38I | GRGCYC | 1 cut(s) | 367 |
| ErhI | CCWWGG | 1 cut(s) | 1378 |
| FaeI | CATG | 5 cut(s) | 125, 488, 890, 1156, 1261 |
| FaqI | GGGAC | 3 cut(s) | 271, 525, 1163 |
| FatI | CATG | 5 cut(s) | 121, 484, 886, 1152, 1257 |
| FbaI | TGATCA | 2 cut(s) | 420, 1053 |
| Fnu4HI | GCNGC | 4 cut(s) | 229, 537, 1158, 1161 |
| FokI | GGATG | 1 cut(s) | 1257 |
| FriOI | GRGCYC | 1 cut(s) | 367 |
| Fsp4HI | GCNGC | 4 cut(s) | 229, 537, 1158, 1161 |
| FspBI | CTAG | 2 cut(s) | 947, 1073 |
| GluI | GCNGC | 4 cut(s) | 229, 537, 1158, 1161 |
| HaeIII | GGCC | 2 cut(s) | 120, 885 |
| HapII | CCGG | 3 cut(s) | 239, 509, 602 |
| HgaI | GACGC | 2 cut(s) | 722, 980 |
| Hin1I | GRCGYC | 2 cut(s) | 344, 733 |
| Hin1II | CATG | 5 cut(s) | 125, 488, 890, 1156, 1261 |
| HincII | GTYRAC | 1 cut(s) | 444 |
| HindII | GTYRAC | 1 cut(s) | 444 |
| HindIII | AAGCTT | 3 cut(s) | 842, 1106, 1388 |
| HinfI | GANTC | 6 cut(s) | 68, 325, 353, 549, 637, 763 |
| HpaI | GTTAAC | 1 cut(s) | 444 |
| HpaII | CCGG | 3 cut(s) | 239, 509, 602 |
| HphI | GGTGA | 5 cut(s) | 235, 415, 646, 1132, 1219 |
| Hpy166II | GTNNAC | 1 cut(s) | 444 |
| Hpy188I | TCNGA | 8 cut(s) | 369, 435, 777, 996, 1011, 1192, 1480, 1521 |
| Hpy188III | TCNNGA | 8 cut(s) | 485, 602, 697, 1051, 1222, 1258, 1343, 1465 |
| Hpy8I | GTNNAC | 1 cut(s) | 444 |
| Hpy99I | CGWCG | 1 cut(s) | 594 |
| HpyAV | CCTTC | 4 cut(s) | 108, 121, 1006, 1436 |
| HpyCH4III | ACNGT | 6 cut(s) | 213, 262, 704, 868, 1292, 1471 |
| HpyCH4IV | ACGT | 3 cut(s) | 344, 543, 1524 |
| HpyCH4V | TGCA | 7 cut(s) | 209, 228, 851, 1100, 1201, 1285, 1373 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 514, 739, 1282, 1370 |
| HpyF3I | CTNAG | 7 cut(s) | 7, 450, 518, 669, 765, 795, 1479 |
| HpySE526I | ACGT | 3 cut(s) | 344, 543, 1524 |
| Hsp92I | GRCGYC | 2 cut(s) | 344, 733 |
| Hsp92II | CATG | 5 cut(s) | 125, 488, 890, 1156, 1261 |
| Kpn2I | TCCGGA | 1 cut(s) | 601 |
| Ksp22I | TGATCA | 2 cut(s) | 420, 1053 |
| KspAI | GTTAAC | 1 cut(s) | 444 |
| Kzo9I | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| LmnI | GCTCC | 2 cut(s) | 236, 778 |
| Lsp1109I | GCAGC | 4 cut(s) | 240, 548, 1169, 1172 |
| LweI | GCATC | 1 cut(s) | 1279 |
| MaeI | CTAG | 2 cut(s) | 947, 1073 |
| MaeII | ACGT | 3 cut(s) | 344, 543, 1524 |
| MaeIII | GTNAC | 3 cut(s) | 241, 1382, 1449 |
| MalI | GATC | 7 cut(s) | 422, 462, 873, 1055, 1171, 1211, 1518 |
| MboI | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| MflI | RGATCY | 1 cut(s) | 1169 |
| MhlI | GDGCHC | 1 cut(s) | 367 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MlyI | GAGTC | 1 cut(s) | 757 |
| MmeI | TCCRAC | 4 cut(s) | 126, 265, 370, 1284 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| MroI | TCCGGA | 1 cut(s) | 601 |
| MroXI | GAANNNNTTC | 1 cut(s) | 129 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 6 cut(s) | 381, 443, 917, 1002, 1404, 1488 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspA1I | CMGCKG | 3 cut(s) | 517, 668, 769 |
| MspI | CCGG | 3 cut(s) | 239, 509, 602 |
| MspR9I | CCNGG | 2 cut(s) | 510, 1411 |
| Mva1269I | GAATGC | 1 cut(s) | 1373 |
| MvaI | CCWGG | 1 cut(s) | 1411 |
| MvnI | CGCG | 1 cut(s) | 594 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 514, 739, 1282, 1370 |
| NciI | CCSGG | 1 cut(s) | 510 |
| NdeII | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| NlaIII | CATG | 5 cut(s) | 125, 488, 890, 1156, 1261 |
| NlaIV | GGNNCC | 1 cut(s) | 774 |
| NmuCI | GTSAC | 2 cut(s) | 241, 1449 |
| NspV | TTCGAA | 1 cut(s) | 1031 |
| PagI | TCATGA | 2 cut(s) | 484, 1257 |
| PctI | GAATGC | 1 cut(s) | 1373 |
| PdmI | GAANNNNTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 5 cut(s) | 68, 325, 353, 549, 637 |
| PkrI | GCNGC | 4 cut(s) | 230, 538, 1159, 1162 |
| PleI | GAGTC | 1 cut(s) | 757 |
| PpsI | GAGTC | 1 cut(s) | 757 |
| PsiI | TTATAA | 1 cut(s) | 570 |
| Psp6I | CCWGG | 1 cut(s) | 1409 |
| PspEI | GGTNACC | 1 cut(s) | 241 |
| PspGI | CCWGG | 1 cut(s) | 1409 |
| PspN4I | GGNNCC | 1 cut(s) | 774 |
| PspPI | GGNCC | 1 cut(s) | 883 |
| PstI | CTGCAG | 1 cut(s) | 1287 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1282 |
| PsuI | RGATCY | 1 cut(s) | 1169 |
| PvuII | CAGCTG | 3 cut(s) | 517, 668, 769 |
| RsaI | GTAC | 2 cut(s) | 1289, 1322 |
| RsaNI | GTAC | 2 cut(s) | 1288, 1321 |
| SaqAI | TTAA | 6 cut(s) | 381, 443, 917, 1002, 1404, 1488 |
| SatI | GCNGC | 4 cut(s) | 229, 537, 1158, 1161 |
| Sau3AI | GATC | 7 cut(s) | 420, 460, 871, 1053, 1169, 1209, 1516 |
| Sau96I | GGNCC | 1 cut(s) | 883 |
| ScaI | AGTACT | 1 cut(s) | 1322 |
| SchI | GAGTC | 1 cut(s) | 757 |
| ScrFI | CCNGG | 2 cut(s) | 510, 1411 |
| SduI | GDGCHC | 1 cut(s) | 367 |
| SfaNI | GCATC | 1 cut(s) | 1279 |
| SfcI | CTRYAG | 1 cut(s) | 1283 |
| SfuI | TTCGAA | 1 cut(s) | 1031 |
| SmlI | CTYRAG | 2 cut(s) | 659, 1222 |
| SmoI | CTYRAG | 2 cut(s) | 659, 1222 |
| SsiI | CCGC | 4 cut(s) | 246, 594, 807, 1274 |
| SspMI | CTAG | 2 cut(s) | 947, 1073 |
| StyD4I | CCNGG | 2 cut(s) | 508, 1409 |
| StyI | CCWWGG | 1 cut(s) | 1378 |
| TaaI | ACNGT | 6 cut(s) | 213, 262, 704, 868, 1292, 1471 |
| TaiI | ACGT | 3 cut(s) | 347, 546, 1527 |
| TaqI | TCGA | 4 cut(s) | 199, 1031, 1212, 1350 |
| TatI | WGTACW | 2 cut(s) | 1287, 1320 |
| TfiI | GAWTC | 5 cut(s) | 68, 325, 353, 549, 637 |
| Tru1I | TTAA | 6 cut(s) | 381, 443, 917, 1002, 1404, 1488 |
| Tru9I | TTAA | 6 cut(s) | 381, 443, 917, 1002, 1404, 1488 |
| TscAI | CASTG | 3 cut(s) | 799, 871, 1458 |
| TseFI | GTSAC | 2 cut(s) | 241, 1449 |
| TseI | GCWGC | 4 cut(s) | 228, 536, 1157, 1160 |
| Tsp45I | GTSAC | 2 cut(s) | 241, 1449 |
| TspDTI | ATGAA | 6 cut(s) | 69, 138, 345, 828, 1431, 1464 |
| TspGWI | ACGGA | 4 cut(s) | 52, 104, 453, 470 |
| TspRI | CASTG | 3 cut(s) | 799, 871, 1458 |
| XapI | RAATTY | 2 cut(s) | 436, 938 |
| XmnI | GAANNNNTTC | 1 cut(s) | 129 |
| XspI | CTAG | 2 cut(s) | 947, 1073 |
| ZraI | GACGTC | 1 cut(s) | 345 |
| ZrmI | AGTACT | 1 cut(s) | 1322 |