Rh1BG418800
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
53979188 .. 53981966
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG418800.1

Sequence Viewer

Length: 1533 bp
ATGGTCTCAGCCTACGCTCTCTTCACACACCCTTTCCCCACTTCTTCTTCTTCTTCTTCTTCCGTTGATTCTCTCTTTTCATACCCACCCCCTCCTCCTTCCAACGCAACCTTCCGTGGCCATGAATGGTTTCCTCTGCTAAAGCTCGCTAAAACCCCAAGACCTGAACCAAACCCCTTACTACCCCAACTGGGTCTTCGACCCAATGCACAGTTTCTTCTCCAATGCAGCTCCAATCCGGTCACCGCCGATATAGGGACGGTCTTCTCGCTCTTACAAGCAGTTGGAATAGACGAGAAAGAAACAAAAGTGCTTTTGGAGAAGAATCCAGCTCTGGCTTTGACGTCTTTGGATTCATTACGGGCTCGGATTGAGTGCTTTAATTCAGTTGGACTTGATGGGCTTGTGCTTTCCAATTTGATCACCAAATGTCCGAATTTGTTAACTGCTGAGGAGATTGATCCGTTTTTGAGTTTTGTCCGTCATGATATGGAAGCCAAAATTGAGCCGGGACAGCTGAGGAGACTTTTTCGGGCAGCAGACGTTAGATTCTTGGTGGGATTTGGTTATAAGGTAGGATTGCTTGTTCGTCGCGGAGTTCCGGAGGAGAAGATTGTTGATGTTCTCAACAAGGTGAATCTATACAAGGCATTGTGTCTCAAGTCAGCTGAGGAAATTGATAGGACTATCACATTCTTGAACCGTTTTGGTGGGATTGACTTGATTGTGAGGCGTCCATCGCTACTGAACTATGACTTGGAGACTCAGCTGGCTCCGAGAGTTGAGTTTCTCACTGAGGTTAGTGGCGGAGATGAAAATGCCACAGGGGTTTTGTTGGGGAAGCTTCCTGCAATTTTGAGCTACACTGTGGATCACACAAAGGGCCATGTAGAGTTGTTGAGGTCATTTGCTGGTTTAAGTGATGAGCAGATATTCAAATTCTTGCTAGTTTTCCCCAATGTGGTTAGTGCCAGCAGGGAGAGGAAAATGCGTCCGAGAATTAAGTTTCTGAAGGAATGTGGGTTGAGTTCGAATGATATCTACAAGTTCTTGATCAAAGCCCCATTGTTTCTAGGCTTGTCGTTTGAAGACAACATTGCATATAAGCTTGTGTTTTTGGTGAAGATTGGGTATAGATATAGAACAAGGGACATGGCAGCAGCAATGGGATCTGCCACCAGAACAAGCTCTGATAATTTGCAAAGGGTGATCGAGTTGTTCTTGAGTTATGGTTTTTCGTGTGCCGACATTGTTGTCATGAGCAGGAGGCATCCGCAGATACTGCAGTACAGTCATAGTGCGTTGGAGAAGAAGATGGAGTACTTGATAAATGATATGGGTCGTGAAATCGAAGAGTTATTAGCCTTTCCTGCATTCCTTGGTTACAAGCTTGATGACAGAATTAAAGCCAGGTATGAAGTGAAGAGGAAGATTTTGGGGGAAGGAATGTCACTGAATAAGCTCTTGACTGTTTCATCTGAGAGTTTTAAACCAAAAACTCCTGCTTATGTAATTGATCTGAACGTGGAATGA

Protein Analysis

510

Amino Acids

57.23

Weight (kDa)

8.89

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 90 - 338 5e-18 mTERF
mTERF PF02536 329 - 497 6.1e-31 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014181)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
AasI GACNNNNNNGTC 1 cut(s) 1253
AatII GACGTC 1 cut(s) 347
AccII CGCG 1 cut(s) 594
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 4 cut(s) 246, 594, 807, 1274
AclWI GGATC 3 cut(s) 455, 879, 1177
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 2 cut(s) 436, 938
AcuI CTGAAG 1 cut(s) 1031
AcyI GRCGYC 2 cut(s) 344, 733
AfaI GTAC 2 cut(s) 1289, 1322
AfiI CCNNNNNNNGG 3 cut(s) 191, 255, 961
AgsI TTSAA 3 cut(s) 700, 937, 1088
AjnI CCWGG 1 cut(s) 1409
AjuI GAANNNNNNNTTGG 6 cut(s) 95, 127, 180, 212, 740, 772
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
Alw26I GTCTC 4 cut(s) 10, 517, 662, 755
AlwI GGATC 3 cut(s) 455, 879, 1177
AlwNI CAGNNNCTG 1 cut(s) 1282
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 2 cut(s) 118, 883
ApeKI GCWGC 4 cut(s) 228, 536, 1157, 1160
ApoI RAATTY 2 cut(s) 436, 938
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 883
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 5 cut(s) 235, 415, 646, 1132, 1219
AsuII TTCGAA 1 cut(s) 1031
BaeI ACNNNNGTAYC 2 cut(s) 1271, 1304
BalI TGGCCA 1 cut(s) 120
BanII GRGCYC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 1304, 1336
BbsI GAAGAC 3 cut(s) 188, 256, 1095
BbvCI CCTCAGC 3 cut(s) 450, 518, 669
BbvI GCAGC 4 cut(s) 240, 548, 1169, 1172
BccI CCATC 3 cut(s) 392, 745, 1309
BciT130I CCWGG 1 cut(s) 1411
BclI TGATCA 2 cut(s) 420, 1053
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 4 cut(s) 10, 517, 662, 755
BfaI CTAG 2 cut(s) 947, 1073
BfmI CTRYAG 1 cut(s) 1283
BisI GCNGC 4 cut(s) 229, 537, 1158, 1161
BlsI GCNGC 4 cut(s) 230, 538, 1159, 1162
BmcAI AGTACT 1 cut(s) 1322
Bme1390I CCNGG 2 cut(s) 510, 1411
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 2 cut(s) 510, 1411
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 1279
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 3 cut(s) 188, 256, 1095
Bpu10I CCTNAGC 3 cut(s) 450, 518, 669
Bpu14I TTCGAA 1 cut(s) 1031
BpuEI CTTGAG 2 cut(s) 644, 1243
BpuMI CCSGG 1 cut(s) 510
BsaHI GRCGYC 2 cut(s) 344, 733
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 115, 1378
BsaWI WCCGGW 2 cut(s) 238, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 255, 961
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 1095, 1170
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 1 cut(s) 1411
BseDI CCNNGG 2 cut(s) 115, 1378
BseGI GGATG 1 cut(s) 1270
BseLI CCNNNNNNNGG 3 cut(s) 191, 255, 961
BseMI GCAATG 2 cut(s) 1095, 1170
BseMII CTCAG 7 cut(s) 21, 441, 509, 660, 779, 786, 1470
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 4 cut(s) 84, 467, 535, 620
BseXI GCAGC 4 cut(s) 240, 548, 1169, 1172
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 120, 885
BsiSI CCGG 3 cut(s) 239, 509, 602
BslFI GGGAC 3 cut(s) 271, 525, 1163
BslI CCNNNNNNNGG 3 cut(s) 191, 255, 961
BsmAI GTCTC 4 cut(s) 10, 517, 662, 755
BsmFI GGGAC 3 cut(s) 271, 525, 1163
BsmI GAATGC 1 cut(s) 1373
BsnI GGCC 2 cut(s) 120, 885
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 1031
Bsp1286I GDGCHC 1 cut(s) 367
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
BspACI CCGC 4 cut(s) 246, 594, 807, 1274
BspANI GGCC 2 cut(s) 120, 885
BspCNI CTCAG 7 cut(s) 20, 442, 510, 661, 778, 787, 1471
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 1 cut(s) 594
BspHI TCATGA 2 cut(s) 484, 1257
BspLI GGNNCC 1 cut(s) 774
BspMAI CTGCAG 1 cut(s) 1287
BspPI GGATC 3 cut(s) 455, 879, 1177
BspT104I TTCGAA 1 cut(s) 1031
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 1095, 1170
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 115, 1378
BssMI GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
BssNI GRCGYC 2 cut(s) 344, 733
BssT1I CCWWGG 1 cut(s) 1378
Bst2UI CCWGG 1 cut(s) 1411
Bst4CI ACNGT 6 cut(s) 213, 262, 704, 868, 1292, 1471
Bst6I CTCTTC 3 cut(s) 26, 1347, 1418
BstACI GRCGYC 2 cut(s) 344, 733
BstAPI GCANNNNNTGC 1 cut(s) 1282
BstBI TTCGAA 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 147, 771, 973
BstDEI CTNAG 7 cut(s) 7, 450, 518, 669, 765, 795, 1479
BstDSI CCRYGG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 1270
BstFNI CGCG 1 cut(s) 594
BstKTI GATC 7 cut(s) 423, 463, 874, 1056, 1172, 1212, 1519
BstMAI GTCTC 4 cut(s) 10, 517, 662, 755
BstMBI GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
BstMWI GCNNNNNNNGC 4 cut(s) 514, 739, 1282, 1370
BstNI CCWGG 1 cut(s) 1411
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 508, 1409
BstSFI CTRYAG 1 cut(s) 1283
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 4 cut(s) 240, 548, 1169, 1172
BstV2I GAAGAC 3 cut(s) 188, 256, 1095
BstX2I RGATCY 1 cut(s) 1169
BstYI RGATCY 1 cut(s) 1169
BsuRI GGCC 2 cut(s) 120, 885
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 1 cut(s) 1270
BtsIMutI CAGTG 3 cut(s) 792, 864, 1451
Cac8I GCNNGC 3 cut(s) 147, 771, 973
CaiI CAGNNNCTG 1 cut(s) 1282
CciI TCATGA 2 cut(s) 484, 1257
Cfr13I GGNCC 1 cut(s) 883
CseI GACGC 2 cut(s) 722, 980
Csp6I GTAC 2 cut(s) 1288, 1321
CviAII CATG 5 cut(s) 122, 485, 887, 1153, 1258
CviQI GTAC 2 cut(s) 1288, 1321
DdeI CTNAG 7 cut(s) 7, 450, 518, 669, 765, 795, 1479
DpnI GATC 7 cut(s) 422, 462, 873, 1055, 1171, 1211, 1518
DpnII GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
DraI TTTAAA 1 cut(s) 1489
DrdI GACNNNNNNGTC 1 cut(s) 1253
DseDI GACNNNNNNGTC 1 cut(s) 1253
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 3 cut(s) 26, 1347, 1418
EarI CTCTTC 3 cut(s) 26, 1347, 1418
EciI GGCGGA 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 1378
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 1039
Eco57I CTGAAG 1 cut(s) 1031
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 1409
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 1 cut(s) 1378
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 1378
FaeI CATG 5 cut(s) 125, 488, 890, 1156, 1261
FaqI GGGAC 3 cut(s) 271, 525, 1163
FatI CATG 5 cut(s) 121, 484, 886, 1152, 1257
FbaI TGATCA 2 cut(s) 420, 1053
Fnu4HI GCNGC 4 cut(s) 229, 537, 1158, 1161
FokI GGATG 1 cut(s) 1257
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 4 cut(s) 229, 537, 1158, 1161
FspBI CTAG 2 cut(s) 947, 1073
GluI GCNGC 4 cut(s) 229, 537, 1158, 1161
HaeIII GGCC 2 cut(s) 120, 885
HapII CCGG 3 cut(s) 239, 509, 602
HgaI GACGC 2 cut(s) 722, 980
Hin1I GRCGYC 2 cut(s) 344, 733
Hin1II CATG 5 cut(s) 125, 488, 890, 1156, 1261
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 3 cut(s) 842, 1106, 1388
HinfI GANTC 6 cut(s) 68, 325, 353, 549, 637, 763
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 3 cut(s) 239, 509, 602
HphI GGTGA 5 cut(s) 235, 415, 646, 1132, 1219
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 8 cut(s) 369, 435, 777, 996, 1011, 1192, 1480, 1521
Hpy188III TCNNGA 8 cut(s) 485, 602, 697, 1051, 1222, 1258, 1343, 1465
Hpy8I GTNNAC 1 cut(s) 444
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 4 cut(s) 108, 121, 1006, 1436
HpyCH4III ACNGT 6 cut(s) 213, 262, 704, 868, 1292, 1471
HpyCH4IV ACGT 3 cut(s) 344, 543, 1524
HpyCH4V TGCA 7 cut(s) 209, 228, 851, 1100, 1201, 1285, 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 514, 739, 1282, 1370
HpyF3I CTNAG 7 cut(s) 7, 450, 518, 669, 765, 795, 1479
HpySE526I ACGT 3 cut(s) 344, 543, 1524
Hsp92I GRCGYC 2 cut(s) 344, 733
Hsp92II CATG 5 cut(s) 125, 488, 890, 1156, 1261
Kpn2I TCCGGA 1 cut(s) 601
Ksp22I TGATCA 2 cut(s) 420, 1053
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
LmnI GCTCC 2 cut(s) 236, 778
Lsp1109I GCAGC 4 cut(s) 240, 548, 1169, 1172
LweI GCATC 1 cut(s) 1279
MaeI CTAG 2 cut(s) 947, 1073
MaeII ACGT 3 cut(s) 344, 543, 1524
MaeIII GTNAC 3 cut(s) 241, 1382, 1449
MalI GATC 7 cut(s) 422, 462, 873, 1055, 1171, 1211, 1518
MboI GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
MflI RGATCY 1 cut(s) 1169
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 4 cut(s) 126, 265, 370, 1284
Mox20I TGGCCA 1 cut(s) 120
MroI TCCGGA 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 120
MseI TTAA 6 cut(s) 381, 443, 917, 1002, 1404, 1488
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 3 cut(s) 517, 668, 769
MspI CCGG 3 cut(s) 239, 509, 602
MspR9I CCNGG 2 cut(s) 510, 1411
Mva1269I GAATGC 1 cut(s) 1373
MvaI CCWGG 1 cut(s) 1411
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 4 cut(s) 514, 739, 1282, 1370
NciI CCSGG 1 cut(s) 510
NdeII GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
NlaIII CATG 5 cut(s) 125, 488, 890, 1156, 1261
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 2 cut(s) 241, 1449
NspV TTCGAA 1 cut(s) 1031
PagI TCATGA 2 cut(s) 484, 1257
PctI GAATGC 1 cut(s) 1373
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 5 cut(s) 68, 325, 353, 549, 637
PkrI GCNGC 4 cut(s) 230, 538, 1159, 1162
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PsiI TTATAA 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 1409
PspEI GGTNACC 1 cut(s) 241
PspGI CCWGG 1 cut(s) 1409
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 1 cut(s) 883
PstI CTGCAG 1 cut(s) 1287
PstNI CAGNNNCTG 1 cut(s) 1282
PsuI RGATCY 1 cut(s) 1169
PvuII CAGCTG 3 cut(s) 517, 668, 769
RsaI GTAC 2 cut(s) 1289, 1322
RsaNI GTAC 2 cut(s) 1288, 1321
SaqAI TTAA 6 cut(s) 381, 443, 917, 1002, 1404, 1488
SatI GCNGC 4 cut(s) 229, 537, 1158, 1161
Sau3AI GATC 7 cut(s) 420, 460, 871, 1053, 1169, 1209, 1516
Sau96I GGNCC 1 cut(s) 883
ScaI AGTACT 1 cut(s) 1322
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 2 cut(s) 510, 1411
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 1279
SfcI CTRYAG 1 cut(s) 1283
SfuI TTCGAA 1 cut(s) 1031
SmlI CTYRAG 2 cut(s) 659, 1222
SmoI CTYRAG 2 cut(s) 659, 1222
SsiI CCGC 4 cut(s) 246, 594, 807, 1274
SspMI CTAG 2 cut(s) 947, 1073
StyD4I CCNGG 2 cut(s) 508, 1409
StyI CCWWGG 1 cut(s) 1378
TaaI ACNGT 6 cut(s) 213, 262, 704, 868, 1292, 1471
TaiI ACGT 3 cut(s) 347, 546, 1527
TaqI TCGA 4 cut(s) 199, 1031, 1212, 1350
TatI WGTACW 2 cut(s) 1287, 1320
TfiI GAWTC 5 cut(s) 68, 325, 353, 549, 637
Tru1I TTAA 6 cut(s) 381, 443, 917, 1002, 1404, 1488
Tru9I TTAA 6 cut(s) 381, 443, 917, 1002, 1404, 1488
TscAI CASTG 3 cut(s) 799, 871, 1458
TseFI GTSAC 2 cut(s) 241, 1449
TseI GCWGC 4 cut(s) 228, 536, 1157, 1160
Tsp45I GTSAC 2 cut(s) 241, 1449
TspDTI ATGAA 6 cut(s) 69, 138, 345, 828, 1431, 1464
TspGWI ACGGA 4 cut(s) 52, 104, 453, 470
TspRI CASTG 3 cut(s) 799, 871, 1458
XapI RAATTY 2 cut(s) 436, 938
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 947, 1073
ZraI GACGTC 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.