Rw1G041000
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
68050296 .. 68052121
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041000.1

Sequence Viewer

Length: 1485 bp
ATGGTCTCAGCCTACGCTCTCTTCACACACCCTTTCCCCACTTCTTCTTCTTCTTCTTCCGTTGATTCTCTCTTTTCATACCCACCACCTCCTCCTTCCAACGCAACCTTCCGTAGCCATGAATGGTTTCCTCTGCTAAAGCTCGCTAAAACCCCAAGACCTGAACCAAACCCCTTACTACCCCAACTGGGTCTTGGACCCAATGCACAGTTTCTTCTCCAATGCAGCTACAATCCGGTCACCGCCGATATAGAAAGAAACAAAAGTTTTGGAGAAGAATCCAGCTCTGGCTTTGACGTCTTTGGATTCGTTACGAGCTCGATTGAGTGCTTCAATTCAGTTGGACTTGACGGGCTTGTGCTTTCCAATTTGATCACCAAATGTCCGAATTTGTTAACTGCTGAGGAGATTGATCCCTTTTTGAGTTTTGTCCGTCATGATATGGAAGCCAAAATTGAGCCGGGACAGCTGAGGAGACTTTTTCGGGCAGCAGACGTTAGATTCTTGGTGGGATTTGGTCATAAGGTAGGATTGCTTGTTCGTCGCGGAGTTCCGGAGGAGAAGATTGTTGATGTTCTCAACAAGGTGAATCTATACAAGGCATTGTGTCTCAAGTCAGCTGAGGAAATTGATAGGACTATCACATTCTTGAACCGTTTTGGTGGGATTGACTTGATTGTGAGGCGTCCATCGCTACTGAACTATGACTTGGAGACTCAGCTGGCTCCGAGAGTTGAGTTTCTCACTGAGGTTAGTGGTGGAGATGAAAATGCCACAGGGGTTTTGTTGGGGAAGCTTCCTGCAATTTTGAGCTACACTGTGGATCACACGAAGGGCCATGTAGAGTTGTTGAGGTCATTTGCTGGTTTAAGTGATGAACAGATATTCAAATTCTTGCTAGTTTTCCCCAATGTGGTTAGTGCCAGCAGGGAGAGGAAAATGCGTCCGAGAATTAAGTTTCTCAAGGAATGTGGGTTGAGTTCGAATGATATCTACAAGTTCTTGATCAAAGCTCCATTGTTTCTAGGCTTGTCGTTTGAAGACAACATTGCATATAAGCTTGTGTTTTTGGTGAAGATTGGGTATAGATATAGAACAAGGGACATGGCAGCAGCAATGGGATCTGCCACCAGAACAAGCTCTGATAATTTGCAAAGGGTGATCGAGTTGTTCTTGAGTTATGGTTTTTCGTGTGCCGACATTGTTGTCATGAGCAGAAGGCATCCGCAGATACTGCAGTACAGTCATAGTGCGTTGGAGAAGAAGATGGAGTACTTGATAAATGATATGGGTCGTGAAATCGAAGAGTTATTAGCCTTTCCTGCATTCCTTGGTTACAAGCTTGATGACAGAATTAAAGCCAGGTATGAAGTGAAGAGGAAGATTTTGGGGGAAGGAATGTCACTGAATAAGCTCTTAACTGTTTCATCTGAGAGTTTTAAACCAAAAACTCCTGCTTATGTAATTGATCTGAACGTGGAATGA

Protein Analysis

494

Amino Acids

55.52

Weight (kDa)

8.54

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 109 - 322 1.8e-13 mTERF
mTERF PF02536 313 - 481 5.7e-31 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014181)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
AatII GACGTC 1 cut(s) 300
AccII CGCG 1 cut(s) 546
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 3 cut(s) 243, 546, 1226
AclWI GGATC 3 cut(s) 407, 831, 1129
AcsI RAATTY 2 cut(s) 388, 890
AcyI GRCGYC 2 cut(s) 297, 685
AfaI GTAC 2 cut(s) 1241, 1274
AfiI CCNNNNNNNGG 2 cut(s) 188, 913
AgsI TTSAA 4 cut(s) 334, 652, 889, 1040
AjnI CCWGG 1 cut(s) 1361
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 692, 724
AloI GAACNNNNNNTCC 2 cut(s) 522, 554
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 4 cut(s) 10, 469, 614, 707
AlwI GGATC 3 cut(s) 407, 831, 1129
AlwNI CAGNNNCTG 1 cut(s) 1234
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 1 cut(s) 835
ApeKI GCWGC 4 cut(s) 225, 488, 1109, 1112
ApoI RAATTY 2 cut(s) 388, 890
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 197, 835
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 5 cut(s) 232, 367, 598, 1084, 1171
AsuII TTCGAA 1 cut(s) 983
AvaII GGWCC 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 1223, 1256
BanII GRGCYC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 1256, 1288
BbsI GAAGAC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 320
BbvCI CCTCAGC 3 cut(s) 402, 470, 621
BbvI GCAGC 4 cut(s) 237, 500, 1121, 1124
BccI CCATC 2 cut(s) 697, 1261
BciT130I CCWGG 1 cut(s) 1363
BclI TGATCA 2 cut(s) 372, 1005
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 4 cut(s) 10, 469, 614, 707
BfaI CTAG 2 cut(s) 899, 1025
BfmI CTRYAG 1 cut(s) 1235
BisI GCNGC 4 cut(s) 226, 489, 1110, 1113
BlsI GCNGC 4 cut(s) 227, 490, 1111, 1114
BmcAI AGTACT 1 cut(s) 1274
Bme1390I CCNGG 2 cut(s) 462, 1363
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 197, 835
BmiI GGNNCC 2 cut(s) 199, 726
BmrFI CCNGG 2 cut(s) 462, 1363
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 1231
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 1047
Bpu10I CCTNAGC 3 cut(s) 402, 470, 621
Bpu14I TTCGAA 1 cut(s) 983
BpuEI CTTGAG 3 cut(s) 596, 947, 1195
BpuMI CCSGG 1 cut(s) 462
BsaHI GRCGYC 2 cut(s) 297, 685
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 1330
BsaWI WCCGGW 2 cut(s) 235, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 913
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 2 cut(s) 1047, 1122
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 1 cut(s) 1363
BseDI CCNNGG 1 cut(s) 1330
BseGI GGATG 1 cut(s) 1222
BseLI CCNNNNNNNGG 2 cut(s) 188, 913
BseMI GCAATG 2 cut(s) 1047, 1122
BseMII CTCAG 7 cut(s) 21, 393, 461, 612, 731, 738, 1422
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 4 cut(s) 81, 419, 487, 572
BseXI GCAGC 4 cut(s) 237, 500, 1121, 1124
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 3 cut(s) 236, 461, 554
BslFI GGGAC 2 cut(s) 477, 1115
BslI CCNNNNNNNGG 2 cut(s) 188, 913
BsmAI GTCTC 4 cut(s) 10, 469, 614, 707
BsmFI GGGAC 2 cut(s) 477, 1115
BsmI GAATGC 1 cut(s) 1325
BsnI GGCC 1 cut(s) 837
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 983
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
BspACI CCGC 3 cut(s) 243, 546, 1226
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 7 cut(s) 20, 394, 462, 613, 730, 739, 1423
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 2 cut(s) 436, 1209
BspLI GGNNCC 2 cut(s) 199, 726
BspMAI CTGCAG 1 cut(s) 1239
BspPI GGATC 3 cut(s) 407, 831, 1129
BspT104I TTCGAA 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 1047, 1122
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 1330
BssMI GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
BssNI GRCGYC 2 cut(s) 297, 685
BssT1I CCWWGG 1 cut(s) 1330
Bst2UI CCWGG 1 cut(s) 1363
Bst4CI ACNGT 5 cut(s) 210, 656, 820, 1244, 1423
Bst6I CTCTTC 3 cut(s) 26, 1299, 1370
BstACI GRCGYC 2 cut(s) 297, 685
BstAPI GCANNNNNTGC 1 cut(s) 1234
BstBI TTCGAA 1 cut(s) 983
BstC8I GCNNGC 3 cut(s) 144, 723, 925
BstDEI CTNAG 7 cut(s) 7, 402, 470, 621, 717, 747, 1431
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 1222
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 7 cut(s) 375, 415, 826, 1008, 1124, 1164, 1471
BstMAI GTCTC 4 cut(s) 10, 469, 614, 707
BstMBI GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
BstMWI GCNNNNNNNGC 4 cut(s) 466, 691, 1234, 1322
BstNI CCWGG 1 cut(s) 1363
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 460, 1361
BstSFI CTRYAG 1 cut(s) 1235
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 237, 500, 1121, 1124
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BsuRI GGCC 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 1 cut(s) 1222
BtsIMutI CAGTG 3 cut(s) 744, 816, 1403
Cac8I GCNNGC 3 cut(s) 144, 723, 925
CaiI CAGNNNCTG 1 cut(s) 1234
CciI TCATGA 2 cut(s) 436, 1209
Cfr13I GGNCC 2 cut(s) 197, 835
CseI GACGC 2 cut(s) 674, 932
Csp6I GTAC 2 cut(s) 1240, 1273
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviAII CATG 5 cut(s) 119, 437, 839, 1105, 1210
CviQI GTAC 2 cut(s) 1240, 1273
DdeI CTNAG 7 cut(s) 7, 402, 470, 621, 717, 747, 1431
DpnI GATC 7 cut(s) 374, 414, 825, 1007, 1123, 1163, 1470
DpnII GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
DraI TTTAAA 1 cut(s) 1441
DrdI GACNNNNNNGTC 1 cut(s) 1205
DseDI GACNNNNNNGTC 1 cut(s) 1205
Eam1104I CTCTTC 3 cut(s) 26, 1299, 1370
EarI CTCTTC 3 cut(s) 26, 1299, 1370
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 1330
Eco24I GRGCYC 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 991
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 1361
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 1330
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 1330
FaeI CATG 5 cut(s) 122, 440, 842, 1108, 1213
FaqI GGGAC 2 cut(s) 477, 1115
FatI CATG 5 cut(s) 118, 436, 838, 1104, 1209
FbaI TGATCA 2 cut(s) 372, 1005
Fnu4HI GCNGC 4 cut(s) 226, 489, 1110, 1113
FokI GGATG 1 cut(s) 1209
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 4 cut(s) 226, 489, 1110, 1113
FspBI CTAG 2 cut(s) 899, 1025
GluI GCNGC 4 cut(s) 226, 489, 1110, 1113
HaeIII GGCC 1 cut(s) 837
HapII CCGG 3 cut(s) 236, 461, 554
HgaI GACGC 2 cut(s) 674, 932
Hin1I GRCGYC 2 cut(s) 297, 685
Hin1II CATG 5 cut(s) 122, 440, 842, 1108, 1213
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 3 cut(s) 794, 1058, 1340
HinfI GANTC 6 cut(s) 65, 278, 306, 501, 589, 715
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 3 cut(s) 236, 461, 554
HphI GGTGA 5 cut(s) 232, 367, 598, 1084, 1171
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 6 cut(s) 387, 729, 948, 1144, 1432, 1473
Hpy188III TCNNGA 7 cut(s) 437, 554, 649, 1003, 1174, 1210, 1295
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 5 cut(s) 105, 118, 826, 1212, 1388
HpyCH4III ACNGT 5 cut(s) 210, 656, 820, 1244, 1423
HpyCH4IV ACGT 3 cut(s) 297, 495, 1476
HpyCH4V TGCA 7 cut(s) 206, 225, 803, 1052, 1153, 1237, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 691, 1234, 1322
HpyF3I CTNAG 7 cut(s) 7, 402, 470, 621, 717, 747, 1431
HpySE526I ACGT 3 cut(s) 297, 495, 1476
Hsp92I GRCGYC 2 cut(s) 297, 685
Hsp92II CATG 5 cut(s) 122, 440, 842, 1108, 1213
Kpn2I TCCGGA 1 cut(s) 553
Ksp22I TGATCA 2 cut(s) 372, 1005
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
LmnI GCTCC 2 cut(s) 730, 1018
Lsp1109I GCAGC 4 cut(s) 237, 500, 1121, 1124
LweI GCATC 1 cut(s) 1231
MaeI CTAG 2 cut(s) 899, 1025
MaeII ACGT 3 cut(s) 297, 495, 1476
MaeIII GTNAC 4 cut(s) 238, 310, 1334, 1401
MalI GATC 7 cut(s) 374, 414, 825, 1007, 1123, 1163, 1470
MboI GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
MflI RGATCY 1 cut(s) 1121
MhlI GDGCHC 1 cut(s) 320
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 3 cut(s) 123, 322, 1236
MroI TCCGGA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 6 cut(s) 395, 869, 954, 1356, 1418, 1440
MspA1I CMGCKG 3 cut(s) 469, 620, 721
MspI CCGG 3 cut(s) 236, 461, 554
MspR9I CCNGG 2 cut(s) 462, 1363
Mva1269I GAATGC 1 cut(s) 1325
MvaI CCWGG 1 cut(s) 1363
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 466, 691, 1234, 1322
NciI CCSGG 1 cut(s) 462
NdeII GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
NlaIII CATG 5 cut(s) 122, 440, 842, 1108, 1213
NlaIV GGNNCC 2 cut(s) 199, 726
NmuCI GTSAC 2 cut(s) 238, 1401
NspV TTCGAA 1 cut(s) 983
PagI TCATGA 2 cut(s) 436, 1209
PctI GAATGC 1 cut(s) 1325
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 5 cut(s) 65, 278, 306, 501, 589
PkrI GCNGC 4 cut(s) 227, 490, 1111, 1114
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 1361
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 1361
PspN4I GGNNCC 2 cut(s) 199, 726
PspPI GGNCC 2 cut(s) 197, 835
PstI CTGCAG 1 cut(s) 1239
PstNI CAGNNNCTG 1 cut(s) 1234
PsuI RGATCY 1 cut(s) 1121
PvuII CAGCTG 3 cut(s) 469, 620, 721
RsaI GTAC 2 cut(s) 1241, 1274
RsaNI GTAC 2 cut(s) 1240, 1273
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 6 cut(s) 395, 869, 954, 1356, 1418, 1440
SatI GCNGC 4 cut(s) 226, 489, 1110, 1113
Sau3AI GATC 7 cut(s) 372, 412, 823, 1005, 1121, 1161, 1468
Sau96I GGNCC 2 cut(s) 197, 835
ScaI AGTACT 1 cut(s) 1274
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 462, 1363
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 1 cut(s) 1231
SfcI CTRYAG 1 cut(s) 1235
SfuI TTCGAA 1 cut(s) 983
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 611, 962, 1174
SmoI CTYRAG 3 cut(s) 611, 962, 1174
SsiI CCGC 3 cut(s) 243, 546, 1226
SspMI CTAG 2 cut(s) 899, 1025
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 460, 1361
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 5 cut(s) 210, 656, 820, 1244, 1423
TaiI ACGT 3 cut(s) 300, 498, 1479
TaqI TCGA 4 cut(s) 320, 983, 1164, 1302
TatI WGTACW 2 cut(s) 1239, 1272
TfiI GAWTC 5 cut(s) 65, 278, 306, 501, 589
Tru1I TTAA 6 cut(s) 395, 869, 954, 1356, 1418, 1440
Tru9I TTAA 6 cut(s) 395, 869, 954, 1356, 1418, 1440
TscAI CASTG 3 cut(s) 751, 823, 1410
TseFI GTSAC 2 cut(s) 238, 1401
TseI GCWGC 4 cut(s) 225, 488, 1109, 1112
Tsp45I GTSAC 2 cut(s) 238, 1401
TspDTI ATGAA 6 cut(s) 66, 135, 780, 891, 1383, 1416
TspGWI ACGGA 3 cut(s) 49, 101, 422
TspRI CASTG 3 cut(s) 751, 823, 1410
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 388, 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 2 cut(s) 899, 1025
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.