Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014181

Physical Location & Seq

Genomic Coordinates Reverse (-)

1093107 .. 1094799

Gene Structure 1693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTCTCAGCCTACGCTCTCTTCACACACCCTTTCCCCACTTCTTCTTCTTCCGTTGATTATCTCTTTTCATACCCACCACCTCCTCCTTCCAACGCAGCCTTCCGTAGCCATGAATGGTTTCCTCTGCTAAAGCTCGCTAAAACCCCAAGACCTCAACCAAACCCCTTACTACCCCAACTGGGTCTTCGACCCAATGCACAGTTTCTTCTCCAATGCAGCTCCAAGCCGGTCACCGCCGATATAGGGACGGTCTTCTCGCTCTTACAAGCAGTTGGAATAGACGAGAAAGAAACAAAAGTGCTTTTGGAGAAGAATCCAGCTCTGTCTTTGACGTCTTTGGATTCGTTACGAGCTCGGATTGAGTGCTTCAATTCAGTTGGACTTGATGGGCTTCTGGCTCCGAGAGTTGAGTTTCTCACTGAGGTTAGTGGTGGAGATGAAAATGCCACAGGGGTTTTGTTGGGGAAGCTTCCTGCAATTTTGAGCTACACTGTGGATCACACAAAGGGCCATGTAGAGTTGTTGAGGTCATTTGCTGGTTTAAGTGATGAACAGATATTCAAATTCTTGCTAGTTTTCCCCAATGTGGTTAGTGCCAGCAGGGAGAGGAAAATGCGTCCGAGAATTAAGTTTCTGAAGGAATGTGGGTTGAGTTCGAATGATATCTACAAGTTCTTGATCAAAGCTCCATTGTTTCTAGGCTTGTCGTTTGAAGACAACATTGCATATAAGCTTGTGTTTTTGGTGAAGATTGGGTATAGATATAGAACAAGGGACATGGCAGCAGCAATGGGATCTGCCACCAGAACAAGCTCTGATAATTTGCAGAGGGTGATTGAGTTGTTCTTGAGTTATGGTTTTTCGTGTGCCGACATTGTTGTCATGAGCAGGAGGCATCCGCAGATACTGCAGTACAGTCATAGTGCGTTGGAGAAGAAGATGGAGTACTTGATAAATGATATGGGTCGTGAAATCGAGGAGTTATTAGCCTTTCCTGCATTCCTTGGTTACAAACTTGATGACAGAATTAAAGCCAGGTATGAAGTGAAGAGGAAGATTTTGGGGGAAGGAATGTCACTGAATAAGCTCTTAACTGTTTCATCTGAGAGTTTTAAACCAAAAACTCCTGCTTATGTAATTGATCTGAACGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

386

Amino Acids

43.24

Weight (kDa)

9.04

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	82 - 251	9.2e-16	mTERF
mTERF	PF02536	210 - 373	2.8e-30	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54180
fragaria_vesca	FvH4_7g32910 FvH4_7g32910
prunus_persica	Prupe.2G318700_v2.0.a1
pyrus_communis	pycom07g27130
rosa_chinensis	RchiOBHm_Chr1g0382851
rosa_laevigata	RLG00000026154
rosa_multiflora	Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009
rosa_roxburghii	Rroxscaffold_4G00277840
rosa_rugosa	Rorug01G0436800
rosa_samantha	Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900
rosa_wichuraiana	Rw1G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	881
AatII	GACGTC	1 cut(s)	338
AciI	CCGC	2 cut(s)	237, 902
AclWI	GGATC	2 cut(s)	507, 805
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	2 cut(s)	917, 950
AfiI	CCNNNNNNNGG	3 cut(s)	182, 246, 589
AgsI	TTSAA	3 cut(s)	373, 565, 716
AjnI	CCWGG	1 cut(s)	1037
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 171, 203
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	507, 805
AlwNI	CAGNNNCTG	1 cut(s)	910
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	4 cut(s)	98, 219, 785, 788
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	226, 760, 847
AsuII	TTCGAA	1 cut(s)	659
BaeI	ACNNNNGTAYC	2 cut(s)	899, 932
BanII	GRGCYC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	2 cut(s)	932, 964
BbsI	GAAGAC	3 cut(s)	179, 247, 723
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	110, 231, 797, 800
BccI	CCATC	2 cut(s)	383, 937
BciT130I	CCWGG	1 cut(s)	1039
BclI	TGATCA	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	575, 701
BfmI	CTRYAG	1 cut(s)	911
BisI	GCNGC	4 cut(s)	99, 220, 786, 789
BlsI	GCNGC	4 cut(s)	100, 221, 787, 790
BmcAI	AGTACT	1 cut(s)	950
Bme1390I	CCNGG	1 cut(s)	1039
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	1039
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	907
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	3 cut(s)	179, 247, 723
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	871
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	1006
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 246, 589
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	723, 798
BseBI	CCWGG	1 cut(s)	1039
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	1 cut(s)	898
BseLI	CCNNNNNNNGG	3 cut(s)	182, 246, 589
BseMI	GCAATG	2 cut(s)	723, 798
BseMII	CTCAG	3 cut(s)	21, 414, 1098
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	75, 995
BseXI	GCAGC	4 cut(s)	110, 231, 797, 800
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	262, 791
BslI	CCNNNNNNNGG	3 cut(s)	182, 246, 589
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	262, 791
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	1 cut(s)	513
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	499, 681, 797, 1144
BspACI	CCGC	2 cut(s)	237, 902
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	3 cut(s)	20, 415, 1099
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	915
BspPI	GGATC	2 cut(s)	507, 805
BspT104I	TTCGAA	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	723, 798
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	1006
BssMI	GATC	4 cut(s)	499, 681, 797, 1144
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	1006
Bst2UI	CCWGG	1 cut(s)	1039
Bst4CI	ACNGT	5 cut(s)	204, 253, 496, 920, 1099
Bst6I	CTCTTC	2 cut(s)	26, 1046
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	138, 601
BstDEI	CTNAG	3 cut(s)	7, 423, 1107
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	898
BstKTI	GATC	4 cut(s)	502, 684, 800, 1147
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	499, 681, 797, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	910, 998
BstNI	CCWGG	1 cut(s)	1039
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	1037
BstSFI	CTRYAG	1 cut(s)	911
BstV1I	GCAGC	4 cut(s)	110, 231, 797, 800
BstV2I	GAAGAC	3 cut(s)	179, 247, 723
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	898
BtsIMutI	CAGTG	3 cut(s)	420, 492, 1079
Cac8I	GCNNGC	2 cut(s)	138, 601
CaiI	CAGNNNCTG	1 cut(s)	910
CciI	TCATGA	1 cut(s)	885
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	916, 949
CviAII	CATG	4 cut(s)	113, 515, 781, 886
CviQI	GTAC	2 cut(s)	916, 949
DdeI	CTNAG	3 cut(s)	7, 423, 1107
DpnI	GATC	4 cut(s)	501, 683, 799, 1146
DpnII	GATC	4 cut(s)	499, 681, 797, 1144
DraI	TTTAAA	1 cut(s)	1117
DrdI	GACNNNNNNGTC	1 cut(s)	881
DseDI	GACNNNNNNGTC	1 cut(s)	881
Eam1104I	CTCTTC	2 cut(s)	26, 1046
EarI	CTCTTC	2 cut(s)	26, 1046
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	1037
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	1006
FaeI	CATG	4 cut(s)	116, 518, 784, 889
FaqI	GGGAC	2 cut(s)	262, 791
FatI	CATG	4 cut(s)	112, 514, 780, 885
FbaI	TGATCA	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	99, 220, 786, 789
FokI	GGATG	1 cut(s)	885
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	4 cut(s)	99, 220, 786, 789
FspBI	CTAG	2 cut(s)	575, 701
GluI	GCNGC	4 cut(s)	99, 220, 786, 789
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	116, 518, 784, 889
HindIII	AAGCTT	2 cut(s)	470, 734
HinfI	GANTC	2 cut(s)	316, 344
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	226, 760, 847
Hpy188I	TCNGA	7 cut(s)	360, 405, 624, 639, 820, 1108, 1149
Hpy188III	TCNNGA	4 cut(s)	679, 850, 886, 971
HpyAV	CCTTC	4 cut(s)	99, 112, 634, 1064
HpyCH4III	ACNGT	5 cut(s)	204, 253, 496, 920, 1099
HpyCH4IV	ACGT	2 cut(s)	335, 1152
HpyCH4V	TGCA	7 cut(s)	200, 219, 479, 728, 829, 913, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	910, 998
HpyF3I	CTNAG	3 cut(s)	7, 423, 1107
HpySE526I	ACGT	2 cut(s)	335, 1152
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	116, 518, 784, 889
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	499, 681, 797, 1144
LmnI	GCTCC	3 cut(s)	227, 406, 694
Lsp1109I	GCAGC	4 cut(s)	110, 231, 797, 800
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	2 cut(s)	575, 701
MaeII	ACGT	2 cut(s)	335, 1152
MaeIII	GTNAC	4 cut(s)	232, 348, 1010, 1077
MalI	GATC	4 cut(s)	501, 683, 799, 1146
MboI	GATC	4 cut(s)	499, 681, 797, 1144
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	7 cut(s)	373, 480, 566, 627, 823, 1029, 1140
MmeI	TCCRAC	4 cut(s)	117, 256, 361, 912
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	5 cut(s)	545, 630, 1032, 1094, 1116
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	1039
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	1 cut(s)	1039
MwoI	GCNNNNNNNGC	2 cut(s)	910, 998
NdeII	GATC	4 cut(s)	499, 681, 797, 1144
NlaIII	CATG	4 cut(s)	116, 518, 784, 889
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	232, 1077
NspV	TTCGAA	1 cut(s)	659
PagI	TCATGA	1 cut(s)	885
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	316, 344
PkrI	GCNGC	4 cut(s)	100, 221, 787, 790
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	1037
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	1037
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	915
PstNI	CAGNNNCTG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	2 cut(s)	917, 950
RsaNI	GTAC	2 cut(s)	916, 949
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	5 cut(s)	545, 630, 1032, 1094, 1116
SatI	GCNGC	4 cut(s)	99, 220, 786, 789
Sau3AI	GATC	4 cut(s)	499, 681, 797, 1144
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	950
ScrFI	CCNGG	1 cut(s)	1039
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	911
SfuI	TTCGAA	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
Sse9I	AATT	7 cut(s)	373, 480, 566, 627, 823, 1029, 1140
SsiI	CCGC	2 cut(s)	237, 902
SspMI	CTAG	2 cut(s)	575, 701
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	1037
StyI	CCWWGG	1 cut(s)	1006
TaaI	ACNGT	5 cut(s)	204, 253, 496, 920, 1099
TaiI	ACGT	2 cut(s)	338, 1155
TaqI	TCGA	3 cut(s)	190, 659, 978
TasI	AATT	7 cut(s)	373, 480, 566, 627, 823, 1029, 1140
TatI	WGTACW	2 cut(s)	915, 948
TfiI	GAWTC	2 cut(s)	316, 344
Tru1I	TTAA	5 cut(s)	545, 630, 1032, 1094, 1116
Tru9I	TTAA	5 cut(s)	545, 630, 1032, 1094, 1116
TscAI	CASTG	3 cut(s)	427, 499, 1086
TseFI	GTSAC	2 cut(s)	232, 1077
TseI	GCWGC	4 cut(s)	98, 219, 785, 788
Tsp45I	GTSAC	2 cut(s)	232, 1077
TspDTI	ATGAA	6 cut(s)	60, 129, 456, 567, 1059, 1092
TspGWI	ACGGA	2 cut(s)	43, 95
TspRI	CASTG	3 cut(s)	427, 499, 1086
XapI	RAATTY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	575, 701
ZraI	GACGTC	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.