Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014181

Physical Location & Seq

Genomic Coordinates Forward (+)

68865242 .. 68866285

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGCCAAAATTGAGCCGGGACAGCTGAGGAGACTTTTTCGGGCAGCAGACGTTAGATTCTTGGTGAGATTTGATTATAAGGTAGGATTGCTTGTTCGTCGCGGAGTTCCGGAGGAGAAGATTGTTGATGTTCTCAACAAGGTGAATCTATACAAGGCATTGTGTCTCAAGTCAGCTGAGGAAATTGATAGGACTATCACATTCTTGAACCGTTTTGGTGGGATTGACTTGATTGTGAGGCGTCCATCGCTACTGAATTATGATTTGGAGACTCAGCTGGCTCCGAGAGTTGAGTTTCTCACTGAGGTTGGTGGTGGAGATGAAAATGCCACAGGGGTTTTGTTGGGGAAGCTTCCTGCAATTTTGAGCTACACTGTGGATCACACAAAGGGCCATGTAGAGTTGTTGAGGTCATTTGCTGGTTTAAGTGATGAACAGATATTCAAATTCTTGCTAGTTTTCCCCAATGTGGTTAGTGCCAGCAGGGAGAGGAAAATGCGTCCGAGAATTAAGTTTCTGAAGGAATGTGGGTTGAGTTCGAATGATATCTACAAGTTCTTGATCAAAGCTCCATTGTTTCTAGGCTTGTCGTTTGAAGACAACATTGCATATAAGCTTGTGTTTTTGGTGAAGATTGGGTATAGATATAGAACAAGGGACATGGCAGCAGCAATGGGATCTGCCACCAGAACAAGCTCTGATAATTTGCAAAGGGTGATTGAGTTGTTCTTGAGTTATGGTTTTTCGTGTGCCGACATTGTTGTCATGAGCAGGAGGCATCCGCAGATACTGCAGTACAGTCATAGTGCGTTGGAGAAGAAGATGGAGTACTTGATAAATGATATGGGTCGTGAAATCGAAGAGTTATTAGCCTTTCCTGCATTCCTTGGTTACAAGCTTGATGACAGAATTAAAGCCAGGTATGAAGTGAAGAGGAAGATTTTGGGGGAAGGAATGTCACTGAATAAGCTCTTAACTGTTTCATCTGAGAGTTTTAAACCAAAAACTCCTGCTTATGTAATTGATCTGAACGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

347

Amino Acids

39.61

Weight (kDa)

9.33

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	36 - 212	2.8e-18	mTERF
mTERF	PF02536	166 - 334	2.7e-31	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54180
fragaria_vesca	FvH4_7g32910 FvH4_7g32910
prunus_persica	Prupe.2G318700_v2.0.a1
pyrus_communis	pycom07g27130
rosa_chinensis	RchiOBHm_Chr1g0382851
rosa_laevigata	RLG00000026154
rosa_multiflora	Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009
rosa_roxburghii	Rroxscaffold_4G00277840
rosa_rugosa	Rorug01G0436800
rosa_samantha	Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900
rosa_wichuraiana	Rw1G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AasI	GACNNNNNNGTC	1 cut(s)	764
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	2 cut(s)	105, 785
AclWI	GGATC	2 cut(s)	390, 688
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	800, 833
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	3 cut(s)	211, 448, 599
AjnI	CCWGG	1 cut(s)	920
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
Alw26I	GTCTC	3 cut(s)	28, 173, 266
AlwI	GGATC	2 cut(s)	390, 688
AlwNI	CAGNNNCTG	1 cut(s)	793
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	47, 668, 671
ApoI	RAATTY	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	4 cut(s)	79, 157, 643, 730
AsuII	TTCGAA	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BarI	GAAGNNNNNNTAC	2 cut(s)	815, 847
BbsI	GAAGAC	1 cut(s)	606
BbvCI	CCTCAGC	2 cut(s)	29, 180
BbvI	GCAGC	3 cut(s)	59, 680, 683
BccI	CCATC	2 cut(s)	256, 820
BciT130I	CCWGG	1 cut(s)	922
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	28, 173, 266
BfaI	CTAG	2 cut(s)	458, 584
BfmI	CTRYAG	1 cut(s)	794
BisI	GCNGC	3 cut(s)	48, 669, 672
BlsI	GCNGC	3 cut(s)	49, 670, 673
BmcAI	AGTACT	1 cut(s)	833
Bme1390I	CCNGG	2 cut(s)	21, 922
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	21, 922
BmsI	GCATC	1 cut(s)	790
BpiI	GAAGAC	1 cut(s)	606
Bpu10I	CCTNAGC	2 cut(s)	29, 180
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	155, 754
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	889
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse3DI	GCAATG	2 cut(s)	606, 681
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	922
BseDI	CCNNGG	1 cut(s)	889
BseGI	GGATG	1 cut(s)	781
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	2 cut(s)	606, 681
BseMII	CTCAG	5 cut(s)	20, 171, 290, 297, 981
BseRI	GAGGAG	2 cut(s)	46, 131
BseXI	GCAGC	3 cut(s)	59, 680, 683
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	20, 113
BslFI	GGGAC	2 cut(s)	36, 674
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	3 cut(s)	28, 173, 266
BsmFI	GGGAC	2 cut(s)	36, 674
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	382, 564, 680, 1027
BspACI	CCGC	2 cut(s)	105, 785
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	5 cut(s)	21, 172, 289, 298, 982
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	798
BspPI	GGATC	2 cut(s)	390, 688
BspT104I	TTCGAA	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	606, 681
BssECI	CCNNGG	1 cut(s)	889
BssMI	GATC	4 cut(s)	382, 564, 680, 1027
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	4 cut(s)	215, 379, 803, 982
Bst6I	CTCTTC	2 cut(s)	858, 929
BstACI	GRCGYC	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	282, 484
BstDEI	CTNAG	5 cut(s)	29, 180, 276, 306, 990
BstF5I	GGATG	1 cut(s)	781
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	4 cut(s)	385, 567, 683, 1030
BstMAI	GTCTC	3 cut(s)	28, 173, 266
BstMBI	GATC	4 cut(s)	382, 564, 680, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 250, 793, 881
BstNI	CCWGG	1 cut(s)	922
BstSCI	CCNGG	2 cut(s)	19, 920
BstSFI	CTRYAG	1 cut(s)	794
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	59, 680, 683
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	781
BtsIMutI	CAGTG	3 cut(s)	303, 375, 962
Cac8I	GCNNGC	2 cut(s)	282, 484
CaiI	CAGNNNCTG	1 cut(s)	793
CciI	TCATGA	1 cut(s)	768
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	233, 491
Csp6I	GTAC	2 cut(s)	799, 832
CviAII	CATG	3 cut(s)	398, 664, 769
CviQI	GTAC	2 cut(s)	799, 832
DdeI	CTNAG	5 cut(s)	29, 180, 276, 306, 990
DpnI	GATC	4 cut(s)	384, 566, 682, 1029
DpnII	GATC	4 cut(s)	382, 564, 680, 1027
DraI	TTTAAA	1 cut(s)	1000
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
Eam1104I	CTCTTC	2 cut(s)	858, 929
EarI	CTCTTC	2 cut(s)	858, 929
Eco130I	CCWWGG	1 cut(s)	889
Eco32I	GATATC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	920
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	3 cut(s)	401, 667, 772
FaqI	GGGAC	2 cut(s)	36, 674
FatI	CATG	3 cut(s)	397, 663, 768
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	48, 669, 672
FokI	GGATG	1 cut(s)	768
Fsp4HI	GCNGC	3 cut(s)	48, 669, 672
FspBI	CTAG	2 cut(s)	458, 584
GluI	GCNGC	3 cut(s)	48, 669, 672
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	20, 113
HgaI	GACGC	2 cut(s)	233, 491
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	401, 667, 772
HindIII	AAGCTT	3 cut(s)	353, 617, 899
HinfI	GANTC	3 cut(s)	60, 148, 274
HpaII	CCGG	2 cut(s)	20, 113
HphI	GGTGA	4 cut(s)	79, 157, 643, 730
Hpy188I	TCNGA	6 cut(s)	288, 507, 522, 703, 991, 1032
Hpy188III	TCNNGA	6 cut(s)	113, 208, 562, 733, 769, 854
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	517, 947
HpyCH4III	ACNGT	4 cut(s)	215, 379, 803, 982
HpyCH4IV	ACGT	2 cut(s)	54, 1035
HpyCH4V	TGCA	5 cut(s)	362, 611, 712, 796, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 250, 793, 881
HpyF3I	CTNAG	5 cut(s)	29, 180, 276, 306, 990
HpySE526I	ACGT	2 cut(s)	54, 1035
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	401, 667, 772
Kpn2I	TCCGGA	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	382, 564, 680, 1027
LmnI	GCTCC	2 cut(s)	289, 577
Lsp1109I	GCAGC	3 cut(s)	59, 680, 683
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	2 cut(s)	458, 584
MaeII	ACGT	2 cut(s)	54, 1035
MaeIII	GTNAC	2 cut(s)	893, 960
MalI	GATC	4 cut(s)	384, 566, 682, 1029
MboI	GATC	4 cut(s)	382, 564, 680, 1027
MboII	GAAGA	8 cut(s)	133, 611, 646, 832, 835, 875, 946, 952
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	9 cut(s)	12, 186, 259, 363, 449, 510, 706, 912, 1023
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	9 cut(s)	24, 109, 175, 234, 301, 405, 486, 771, 930
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	5 cut(s)	428, 513, 915, 977, 999
MspA1I	CMGCKG	3 cut(s)	28, 179, 280
MspI	CCGG	2 cut(s)	20, 113
MspR9I	CCNGG	2 cut(s)	21, 922
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	922
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	25, 250, 793, 881
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	382, 564, 680, 1027
NlaIII	CATG	3 cut(s)	401, 667, 772
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	960
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	768
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	60, 148
PkrI	GCNGC	3 cut(s)	49, 670, 673
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	920
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	680
PvuII	CAGCTG	3 cut(s)	28, 179, 280
RsaI	GTAC	2 cut(s)	800, 833
RsaNI	GTAC	2 cut(s)	799, 832
SaqAI	TTAA	5 cut(s)	428, 513, 915, 977, 999
SatI	GCNGC	3 cut(s)	48, 669, 672
Sau3AI	GATC	4 cut(s)	382, 564, 680, 1027
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	833
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	21, 922
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	1 cut(s)	794
SfuI	TTCGAA	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	170, 733
SmoI	CTYRAG	2 cut(s)	170, 733
Sse9I	AATT	9 cut(s)	12, 186, 259, 363, 449, 510, 706, 912, 1023
SsiI	CCGC	2 cut(s)	105, 785
SspMI	CTAG	2 cut(s)	458, 584
StyD4I	CCNGG	2 cut(s)	19, 920
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	4 cut(s)	215, 379, 803, 982
TaiI	ACGT	2 cut(s)	57, 1038
TaqI	TCGA	2 cut(s)	542, 861
TasI	AATT	9 cut(s)	12, 186, 259, 363, 449, 510, 706, 912, 1023
TatI	WGTACW	2 cut(s)	798, 831
TfiI	GAWTC	2 cut(s)	60, 148
Tru1I	TTAA	5 cut(s)	428, 513, 915, 977, 999
Tru9I	TTAA	5 cut(s)	428, 513, 915, 977, 999
TscAI	CASTG	3 cut(s)	310, 382, 969
TseFI	GTSAC	1 cut(s)	960
TseI	GCWGC	3 cut(s)	47, 668, 671
Tsp45I	GTSAC	1 cut(s)	960
TspDTI	ATGAA	4 cut(s)	339, 450, 942, 975
TspRI	CASTG	3 cut(s)	310, 382, 969
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	2 cut(s)	458, 584
ZrmI	AGTACT	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.