Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002242.1

Orthogroup ID

OG0014181

Physical Location & Seq

Genomic Coordinates Forward (+)

41102 .. 42693

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002242.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

atggtctcagcctacgctctcttcacacaccctttccccacttcttcttcttccgttgattatctcttttcatacccaccacctcctccttccaacgcaaccttccgtagccatgaatggtttcctctgctaaagctcgctaaaaccccaaaacctgaaccaaaccccttactaccccaactgggtcttggacccaatgcacagtttcttctccaatgcagctccaatccggtcaccgccgatatagggacggtcttctcgctcttacaagcagttggaatagacgagaaagaaacaaaagtgcttttggagaagaatccagctctggctttgacgtctttggattcattacgggctcggattgagtgctttaattcagttggacttgatgggcttgtgctttccaatttgatcaccaaatgtccgaatttgttaactgctgaggagattgatccctttttgagttttgtccgtcatgatatggaagccaaaattgagccgggacagctgaggagactttttcgggcagcagacgttagattcttggtgggatttggtcataaggtaggattgcttgttcgtcgcggagttccggaggagaagattgttgatgttctcaacaaggtgaatctatacaaggcattgtgtctcaagtcagctgaggaaattgataggactatcacattcttgaaccgttttggtgggattgacttgattgtgaggcgtccatcgctactgaactatgacttggagactcagctggctccgagagttgagtttctcactgaggttagtggcggagatgaaaatgccacaggggttttgttggggaagcttcctgcaattttgagctacactgtggatcacacaaagggccatgtagggttgttgaggtcatttgctggtttaagtgatgaacagatattcaaattcttgctagttttccccaatgtggttagtgccagcagggagaggaaaatgcgtccgagaattaagtttctgaaggaatgtgggttgagttcgaatgatatctacaagttcttgatcaaagccccattgtttctaggcttgtcgtttgaagacaacattgcatataagcttgtgtttttggtgaagattgggtatagatatagaacaagggacatggcagcagcaatgggatctgccaccagaacaagctctgataatttgcaaagggtgatcgagttgttcttgagttatggtttttcgtgtgccgacattgttgtcatgagcaggaggcatccgcagatactgcagtacagtcatggtgcgttggagaagaagatggagtacttgataaatgatatgggtcgtgaaatcgaagagttattagcctttcctgcattccttggttacaagcttgatgacagaattaaagccaggtatgaagtgaagaggaagattttgggggaaggaatgtcactgaataagctcttaactgtttcatctgagagttttaaaccaaaaactcctgcttatgtaattgatctgaacgtggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

507

Amino Acids

56.82

Weight (kDa)

8.88

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54180
fragaria_vesca	FvH4_7g32910 FvH4_7g32910
prunus_persica	Prupe.2G318700_v2.0.a1
pyrus_communis	pycom07g27130
rosa_chinensis	RchiOBHm_Chr1g0382851
rosa_laevigata	RLG00000026154
rosa_multiflora	Rmu_co8304207.1_g000001 Rmu_sc0002242.1_g000011 Rmu_sc0010366.1_g000009
rosa_roxburghii	Rroxscaffold_4G00277840
rosa_rugosa	Rorug01G0436800
rosa_samantha	Rh1AG461800 Rh1BG418800 Rh1CG432500 Rh1DG450900
rosa_wichuraiana	Rw1G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1244
AatII	GACGTC	1 cut(s)	338
AccII	CGCG	1 cut(s)	585
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	4 cut(s)	237, 585, 798, 1265
AclWI	GGATC	3 cut(s)	446, 870, 1168
AcsI	RAATTY	2 cut(s)	427, 929
AcuI	CTGAAG	1 cut(s)	1022
AcyI	GRCGYC	2 cut(s)	335, 724
AfaI	GTAC	2 cut(s)	1280, 1313
AfiI	CCNNNNNNNGG	3 cut(s)	182, 246, 952
AgsI	TTSAA	3 cut(s)	691, 928, 1079
AjnI	CCWGG	1 cut(s)	1400
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 731, 763
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
Alw26I	GTCTC	4 cut(s)	10, 508, 653, 746
AlwI	GGATC	3 cut(s)	446, 870, 1168
AlwNI	CAGNNNCTG	1 cut(s)	1273
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	1 cut(s)	874
ApeKI	GCWGC	4 cut(s)	219, 527, 1148, 1151
ApoI	RAATTY	2 cut(s)	427, 929
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	191, 874
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	5 cut(s)	226, 406, 637, 1123, 1210
AsuII	TTCGAA	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	1262, 1295
BanII	GRGCYC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	2 cut(s)	1295, 1327
BbsI	GAAGAC	2 cut(s)	247, 1086
BbvCI	CCTCAGC	3 cut(s)	441, 509, 660
BbvI	GCAGC	4 cut(s)	231, 539, 1160, 1163
BccI	CCATC	3 cut(s)	383, 736, 1300
BciT130I	CCWGG	1 cut(s)	1402
BclI	TGATCA	2 cut(s)	411, 1044
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	4 cut(s)	10, 508, 653, 746
BfaI	CTAG	2 cut(s)	938, 1064
BfmI	CTRYAG	1 cut(s)	1274
BisI	GCNGC	4 cut(s)	220, 528, 1149, 1152
BlsI	GCNGC	4 cut(s)	221, 529, 1150, 1153
BmcAI	AGTACT	1 cut(s)	1313
Bme1390I	CCNGG	2 cut(s)	501, 1402
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 874
BmiI	GGNNCC	2 cut(s)	193, 765
BmrFI	CCNGG	2 cut(s)	501, 1402
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	1270
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	2 cut(s)	247, 1086
Bpu10I	CCTNAGC	3 cut(s)	441, 509, 660
Bpu14I	TTCGAA	1 cut(s)	1022
BpuEI	CTTGAG	2 cut(s)	635, 1234
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	2 cut(s)	335, 724
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	1369
BsaWI	WCCGGW	2 cut(s)	229, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 246, 952
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	1086, 1161
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	1402
BseDI	CCNNGG	1 cut(s)	1369
BseGI	GGATG	1 cut(s)	1261
BseLI	CCNNNNNNNGG	3 cut(s)	182, 246, 952
BseMI	GCAATG	2 cut(s)	1086, 1161
BseMII	CTCAG	7 cut(s)	21, 432, 500, 651, 770, 777, 1461
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	4 cut(s)	75, 458, 526, 611
BseXI	GCAGC	4 cut(s)	231, 539, 1160, 1163
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	876
BsiSI	CCGG	3 cut(s)	230, 500, 593
BslFI	GGGAC	3 cut(s)	262, 516, 1154
BslI	CCNNNNNNNGG	3 cut(s)	182, 246, 952
BsmAI	GTCTC	4 cut(s)	10, 508, 653, 746
BsmFI	GGGAC	3 cut(s)	262, 516, 1154
BsmI	GAATGC	1 cut(s)	1364
BsnI	GGCC	1 cut(s)	876
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	1022
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
BspACI	CCGC	4 cut(s)	237, 585, 798, 1265
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	7 cut(s)	20, 433, 501, 652, 769, 778, 1462
BspEI	TCCGGA	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	475, 1248
BspLI	GGNNCC	2 cut(s)	193, 765
BspMAI	CTGCAG	1 cut(s)	1278
BspPI	GGATC	3 cut(s)	446, 870, 1168
BspT104I	TTCGAA	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	1086, 1161
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	1369
BssMI	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
BssNI	GRCGYC	2 cut(s)	335, 724
BssT1I	CCWWGG	1 cut(s)	1369
Bst2UI	CCWGG	1 cut(s)	1402
Bst4CI	ACNGT	6 cut(s)	204, 253, 695, 859, 1283, 1462
Bst6I	CTCTTC	3 cut(s)	26, 1338, 1409
BstACI	GRCGYC	2 cut(s)	335, 724
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstBI	TTCGAA	1 cut(s)	1022
BstC8I	GCNNGC	3 cut(s)	138, 762, 964
BstDEI	CTNAG	7 cut(s)	7, 441, 509, 660, 756, 786, 1470
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	1261
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	7 cut(s)	414, 454, 865, 1047, 1163, 1203, 1510
BstMAI	GTCTC	4 cut(s)	10, 508, 653, 746
BstMBI	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
BstMWI	GCNNNNNNNGC	4 cut(s)	505, 730, 1273, 1361
BstNI	CCWGG	1 cut(s)	1402
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	499, 1400
BstSFI	CTRYAG	1 cut(s)	1274
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	231, 539, 1160, 1163
BstV2I	GAAGAC	2 cut(s)	247, 1086
BstX2I	RGATCY	1 cut(s)	1160
BstYI	RGATCY	1 cut(s)	1160
BsuRI	GGCC	1 cut(s)	876
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	1 cut(s)	1261
BtsIMutI	CAGTG	3 cut(s)	783, 855, 1442
Cac8I	GCNNGC	3 cut(s)	138, 762, 964
CaiI	CAGNNNCTG	1 cut(s)	1273
CciI	TCATGA	2 cut(s)	475, 1248
Cfr13I	GGNCC	2 cut(s)	191, 874
CseI	GACGC	2 cut(s)	713, 971
Csp6I	GTAC	2 cut(s)	1279, 1312
CviAII	CATG	6 cut(s)	113, 476, 878, 1144, 1249, 1286
CviQI	GTAC	2 cut(s)	1279, 1312
DdeI	CTNAG	7 cut(s)	7, 441, 509, 660, 756, 786, 1470
DpnI	GATC	7 cut(s)	413, 453, 864, 1046, 1162, 1202, 1509
DpnII	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
DraI	TTTAAA	1 cut(s)	1480
DrdI	GACNNNNNNGTC	1 cut(s)	1244
DseDI	GACNNNNNNGTC	1 cut(s)	1244
Eam1104I	CTCTTC	3 cut(s)	26, 1338, 1409
EarI	CTCTTC	3 cut(s)	26, 1338, 1409
EciI	GGCGGA	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	1369
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	1022
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	1400
EcoRV	GATATC	1 cut(s)	1030
EcoT14I	CCWWGG	1 cut(s)	1369
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	1369
FaeI	CATG	6 cut(s)	116, 479, 881, 1147, 1252, 1289
FaqI	GGGAC	3 cut(s)	262, 516, 1154
FatI	CATG	6 cut(s)	112, 475, 877, 1143, 1248, 1285
FbaI	TGATCA	2 cut(s)	411, 1044
Fnu4HI	GCNGC	4 cut(s)	220, 528, 1149, 1152
FokI	GGATG	1 cut(s)	1248
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	4 cut(s)	220, 528, 1149, 1152
FspBI	CTAG	2 cut(s)	938, 1064
GluI	GCNGC	4 cut(s)	220, 528, 1149, 1152
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	3 cut(s)	230, 500, 593
HgaI	GACGC	2 cut(s)	713, 971
Hin1I	GRCGYC	2 cut(s)	335, 724
Hin1II	CATG	6 cut(s)	116, 479, 881, 1147, 1252, 1289
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	3 cut(s)	833, 1097, 1379
HinfI	GANTC	5 cut(s)	316, 344, 540, 628, 754
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	3 cut(s)	230, 500, 593
HphI	GGTGA	5 cut(s)	226, 406, 637, 1123, 1210
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	8 cut(s)	360, 426, 768, 987, 1002, 1183, 1471, 1512
Hpy188III	TCNNGA	7 cut(s)	476, 593, 688, 1042, 1213, 1249, 1334
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	4 cut(s)	99, 112, 997, 1427
HpyCH4III	ACNGT	6 cut(s)	204, 253, 695, 859, 1283, 1462
HpyCH4IV	ACGT	3 cut(s)	335, 534, 1515
HpyCH4V	TGCA	7 cut(s)	200, 219, 842, 1091, 1192, 1276, 1364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	505, 730, 1273, 1361
HpyF3I	CTNAG	7 cut(s)	7, 441, 509, 660, 756, 786, 1470
HpySE526I	ACGT	3 cut(s)	335, 534, 1515
Hsp92I	GRCGYC	2 cut(s)	335, 724
Hsp92II	CATG	6 cut(s)	116, 479, 881, 1147, 1252, 1289
Kpn2I	TCCGGA	1 cut(s)	592
Ksp22I	TGATCA	2 cut(s)	411, 1044
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
LmnI	GCTCC	2 cut(s)	227, 769
Lsp1109I	GCAGC	4 cut(s)	231, 539, 1160, 1163
LweI	GCATC	1 cut(s)	1270
MaeI	CTAG	2 cut(s)	938, 1064
MaeII	ACGT	3 cut(s)	335, 534, 1515
MaeIII	GTNAC	3 cut(s)	232, 1373, 1440
MalI	GATC	7 cut(s)	413, 453, 864, 1046, 1162, 1202, 1509
MboI	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
MflI	RGATCY	1 cut(s)	1160
MhlI	GDGCHC	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	4 cut(s)	117, 256, 361, 1275
MroI	TCCGGA	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	7 cut(s)	372, 434, 908, 993, 1395, 1457, 1479
MspA1I	CMGCKG	3 cut(s)	508, 659, 760
MspI	CCGG	3 cut(s)	230, 500, 593
MspR9I	CCNGG	2 cut(s)	501, 1402
Mva1269I	GAATGC	1 cut(s)	1364
MvaI	CCWGG	1 cut(s)	1402
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	505, 730, 1273, 1361
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
NlaIII	CATG	6 cut(s)	116, 479, 881, 1147, 1252, 1289
NlaIV	GGNNCC	2 cut(s)	193, 765
NmuCI	GTSAC	2 cut(s)	232, 1440
NspV	TTCGAA	1 cut(s)	1022
PagI	TCATGA	2 cut(s)	475, 1248
PctI	GAATGC	1 cut(s)	1364
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	316, 344, 540, 628
PkrI	GCNGC	4 cut(s)	221, 529, 1150, 1153
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
Psp6I	CCWGG	1 cut(s)	1400
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	1400
PspN4I	GGNNCC	2 cut(s)	193, 765
PspPI	GGNCC	2 cut(s)	191, 874
PstI	CTGCAG	1 cut(s)	1278
PstNI	CAGNNNCTG	1 cut(s)	1273
PsuI	RGATCY	1 cut(s)	1160
PvuII	CAGCTG	3 cut(s)	508, 659, 760
RsaI	GTAC	2 cut(s)	1280, 1313
RsaNI	GTAC	2 cut(s)	1279, 1312
SaqAI	TTAA	7 cut(s)	372, 434, 908, 993, 1395, 1457, 1479
SatI	GCNGC	4 cut(s)	220, 528, 1149, 1152
Sau3AI	GATC	7 cut(s)	411, 451, 862, 1044, 1160, 1200, 1507
Sau96I	GGNCC	2 cut(s)	191, 874
ScaI	AGTACT	1 cut(s)	1313
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	501, 1402
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	1270
SfcI	CTRYAG	1 cut(s)	1274
SfuI	TTCGAA	1 cut(s)	1022
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	650, 1213
SmoI	CTYRAG	2 cut(s)	650, 1213
SsiI	CCGC	4 cut(s)	237, 585, 798, 1265
SspMI	CTAG	2 cut(s)	938, 1064
StyD4I	CCNGG	2 cut(s)	499, 1400
StyI	CCWWGG	1 cut(s)	1369
TaaI	ACNGT	6 cut(s)	204, 253, 695, 859, 1283, 1462
TaiI	ACGT	3 cut(s)	338, 537, 1518
TaqI	TCGA	3 cut(s)	1022, 1203, 1341
TatI	WGTACW	2 cut(s)	1278, 1311
TfiI	GAWTC	4 cut(s)	316, 344, 540, 628
Tru1I	TTAA	7 cut(s)	372, 434, 908, 993, 1395, 1457, 1479
Tru9I	TTAA	7 cut(s)	372, 434, 908, 993, 1395, 1457, 1479
TscAI	CASTG	3 cut(s)	790, 862, 1449
TseFI	GTSAC	2 cut(s)	232, 1440
TseI	GCWGC	4 cut(s)	219, 527, 1148, 1151
Tsp45I	GTSAC	2 cut(s)	232, 1440
TspDTI	ATGAA	7 cut(s)	60, 129, 336, 819, 930, 1422, 1455
TspGWI	ACGGA	3 cut(s)	43, 95, 461
TspRI	CASTG	3 cut(s)	790, 862, 1449
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	427, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	938, 1064
ZraI	GACGTC	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.