AT5G54310

ADP-ribosylation factor GTPase-activating protein AGD5

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
22056986 .. 22061270
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54310.1

Sequence Viewer

Length: 1452 bp
ATGAACGAGAAAGCCAACGTCTCTAAGGAGCTTAATGCCCGCCATAGAAAGATTCTTGAAGGGCTTCTTAAACATCCAGAGAACAGAGAATGTGCTGACTGCAAAACAAAAGGTCCAAGATGGGCTAGTGTTAATTTAGGTATCTTTATCTGCATGCAATGTTCTGGGATTCACAGGAGTCTCGGGGTACACATATCGAAGGTTCGATCTGCCACTCTGGACACATGGCTCCCCGAGCAGGTTGCATTTATACAGTCAATGGGAAATGATAAAGCAAATAGTTACTGGGAAGCAGAGCTACCCCCAAACTATGATAGAGTTGGAATTGAGAATTTTATACGTGCAAAGTATGAAGAGAAGAGATGGGTTTCTAGAGGGGAAAAGGCTAGATCACCTCCTAGAGTCGAGCAGGAACGGCGGAAATCTGTGGAGAGAAGTGGGCCGGGATATGAGCATGGACATAGTAGTAGTCCTGTAAATTTGTTTGAGGAGAGGAAAACTATTCCAGCATCTAGAACAAGAAATAATGTTGCTGCAACGAGAATAAATCTTCCCGTGCCTCCCCAAGGACCCAGTCAGGTTATAAAGCCACAGCAGAAAATGGAGTCTGCAGCTACTCCAGTAGAGAGGGAGAAACAAGCAGTAAATGTTGCACCAGCATCAGATCCTCCAAAGGTGGATTTTGCTACTGATCTGTTTAACATGCTATCAATGGATGATTCGACTACAAATACCTCAGAGGCAACTCCTGGCGATACTCCTGCCGATGATAACTCATGGGCTGGCTTTCAGTCTGCTGGAAGTGGTCAAACGGCAGAGAAAATTGTCACAGCCAAGCCTGCTGAGAGCAGTTCTCCTCCAGCTTCATCTTCTGACTTTGAGGATTTGTTTAAGGACACACCTAATTTAACAACTCAACAAGCACCAAAAGATGTGAAAGGCGATATCATGAGCCTGTTTGAGAAGACGAATATAGTATCGCCTTTTGCCATGCATCAGCAACAGGTTGCTATGCTCGCTCAGCAGCAAGCCCTTTACATGGCTGCAGCGAAAGCTGCTGGAGGCACTCCAAACGGCGTGAATCAACAAGCTATTGCTAATGCTCTTAACGTAGCTTCTGCAAATTGGTCAAACCCCGGCGGCTACCAGATCCCCGGAATGACTAACCCCGTAGGTGGTCAAGCTGATCTCCAGAAACTTATGCAAAACATGAATATGAACGCAAACATGAACACGAGACCCGCACAACCGCAAGAGAACACTCTACAATACCCATCATCCAGTTTCTACACAATGGGTCAAGCTAATCAAGTGAACGGTATGACCCCAAACTCAACCGGTAAACCTCAGTCATCATCCGCAACCCAACCAACAAGCACCACACCATCTTCACAATCAGGCAAAGACTTTGATTTCTCTTCCTTGATGGATGGAATGTTCACAAAACATTGA

Protein Analysis

483

Amino Acids

52.59

Weight (kDa)

7.68

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 17 - 124 3.3e-42 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 229
AciI CCGC 6 cut(s) 40, 418, 1140, 1242, 1250, 1359
AclWI GGATC 2 cut(s) 659, 1144
AcsI RAATTY 2 cut(s) 331, 478
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 238, 566, 1039, 1175
AgeI ACCGGT 1 cut(s) 1337
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 748
AloI GAACNNNNNNTCC 1 cut(s) 1421
AluBI AGCT 9 cut(s) 31, 298, 614, 863, 1055, 1091, 1115, 1184, 1304
AluI AGCT 9 cut(s) 31, 298, 614, 863, 1055, 1091, 1115, 1184, 1304
Alw26I GTCTC 3 cut(s) 25, 185, 1231
AlwI GGATC 2 cut(s) 659, 1144
Ama87I CYCGRG 2 cut(s) 182, 233
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 6 cut(s) 533, 611, 1024, 1043, 1046, 1055
ApoI RAATTY 2 cut(s) 331, 478
AsiGI ACCGGT 1 cut(s) 1337
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 3 cut(s) 113, 440, 569
AsuC2I CCSGG 3 cut(s) 444, 1137, 1155
AsuHPI GGTGA 1 cut(s) 384
AvaI CYCGRG 2 cut(s) 182, 233
AvaII GGWCC 2 cut(s) 113, 569
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BauI CACGAG 1 cut(s) 1234
BbsI GAAGAC 1 cut(s) 971
BbvI GCAGC 6 cut(s) 520, 623, 1030, 1036, 1042, 1058
BccI CCATC 6 cut(s) 114, 357, 1282, 1393, 1420, 1424
BceAI ACGGC 3 cut(s) 431, 828, 1090
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 743, 777
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 3 cut(s) 444, 1137, 1155
BcoDI GTCTC 3 cut(s) 25, 185, 1231
BfaI CTAG 5 cut(s) 126, 372, 387, 399, 513
BfmI CTRYAG 2 cut(s) 609, 1044
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 7 cut(s) 534, 612, 1025, 1044, 1047, 1056, 1141
BlpI GCTNAGC 1 cut(s) 1020
BlsI GCNGC 7 cut(s) 535, 613, 1026, 1045, 1048, 1057, 1142
Bme1390I CCNGG 4 cut(s) 444, 750, 1137, 1155
Bme18I GGWCC 2 cut(s) 113, 569
BmeT110I CYCGRG 2 cut(s) 182, 233
BmgT120I GGNCC 3 cut(s) 113, 440, 569
BmiI GGNNCC 2 cut(s) 230, 571
BmrFI CCNGG 4 cut(s) 444, 750, 1137, 1155
BmrI ACTGGG 2 cut(s) 295, 567
BmsI GCATC 3 cut(s) 518, 668, 1003
BmuI ACTGGG 2 cut(s) 295, 567
BpiI GAAGAC 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 838, 870
BpmI CTGGAG 4 cut(s) 603, 843, 1080, 1175
Bpu1102I GCTNAGC 1 cut(s) 1020
BpuMI CCSGG 3 cut(s) 444, 1137, 1155
BsaAI YACGTR 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 1231
BsaJI CCNNGG 3 cut(s) 565, 1135, 1153
BsaWI WCCGGW 1 cut(s) 1337
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 566, 1039, 1175
Bse118I RCCGGY 1 cut(s) 1337
Bse1I ACTGG 4 cut(s) 290, 573, 620, 1281
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 565, 1135, 1153
BseGI GGATG 5 cut(s) 73, 721, 1277, 1355, 1435
BseLI CCNNNNNNNGG 4 cut(s) 238, 566, 1039, 1175
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 4 cut(s) 750, 834, 1034, 1361
BseNI ACTGG 4 cut(s) 290, 573, 620, 1281
BseRI GAGGAG 2 cut(s) 503, 846
BseXI GCAGC 6 cut(s) 520, 623, 1030, 1036, 1042, 1058
BshFI GGCC 1 cut(s) 442
BshTI ACCGGT 1 cut(s) 1337
BsiHKCI CYCGRG 2 cut(s) 182, 233
BsiSI CCGG 4 cut(s) 443, 1137, 1155, 1338
BslI CCNNNNNNNGG 4 cut(s) 238, 566, 1039, 1175
BsmAI GTCTC 3 cut(s) 25, 185, 1231
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 1231
BsoBI CYCGRG 2 cut(s) 182, 233
Bsp143I GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
Bsp1720I GCTNAGC 1 cut(s) 1020
BspACI CCGC 6 cut(s) 40, 418, 1140, 1242, 1250, 1359
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 4 cut(s) 749, 835, 1033, 1360
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 2 cut(s) 230, 571
BspMAI CTGCAG 2 cut(s) 613, 1048
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 2 cut(s) 659, 1144
BspTNI GGTCTC 1 cut(s) 1231
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 1337
BsrI ACTGG 4 cut(s) 290, 573, 620, 1281
BssAI RCCGGY 1 cut(s) 1337
BssECI CCNNGG 3 cut(s) 565, 1135, 1153
BssMI GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
BssSI CACGAG 1 cut(s) 1234
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 1234
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 255, 1319
Bst6I CTCTTC 3 cut(s) 348, 353, 1423
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 6 cut(s) 40, 155, 784, 840, 1017, 1029
BstDEI CTNAG 5 cut(s) 24, 736, 843, 1020, 1347
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 5 cut(s) 73, 721, 1277, 1355, 1435
BstKTI GATC 6 cut(s) 209, 392, 667, 694, 1152, 1189
BstMAI GTCTC 3 cut(s) 25, 185, 1231
BstMBI GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
BstMWI GCNNNNNNNGC 7 cut(s) 235, 415, 839, 1016, 1021, 1052, 1055
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 2 cut(s) 157, 706
BstSCI CCNGG 4 cut(s) 442, 748, 1135, 1153
BstSFI CTRYAG 2 cut(s) 609, 1044
BstV1I GCAGC 6 cut(s) 520, 623, 1030, 1036, 1042, 1058
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 2 cut(s) 664, 1149
BstYI RGATCY 2 cut(s) 664, 1149
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 5 cut(s) 73, 721, 1277, 1355, 1435
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 6 cut(s) 40, 155, 784, 840, 1017, 1029
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 1337
Cfr13I GGNCC 3 cut(s) 113, 440, 569
Csp6I GTAC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 1337
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 5 cut(s) 24, 736, 843, 1020, 1347
DpnI GATC 6 cut(s) 208, 391, 666, 693, 1151, 1188
DpnII GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
Eam1104I CTCTTC 3 cut(s) 348, 353, 1423
EarI CTCTTC 3 cut(s) 348, 353, 1423
EciI GGCGGA 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 1231
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 2 cut(s) 113, 569
Eco88I CYCGRG 2 cut(s) 182, 233
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 25
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FauI CCCGC 2 cut(s) 47, 1249
Fnu4HI GCNGC 7 cut(s) 534, 612, 1025, 1044, 1047, 1056, 1141
FokI GGATG 5 cut(s) 60, 728, 1264, 1342, 1442
Fsp4HI GCNGC 7 cut(s) 534, 612, 1025, 1044, 1047, 1056, 1141
FspBI CTAG 5 cut(s) 126, 372, 387, 399, 513
GluI GCNGC 7 cut(s) 534, 612, 1025, 1044, 1047, 1056, 1141
GsuI CTGGAG 4 cut(s) 603, 843, 1080, 1175
HaeIII GGCC 1 cut(s) 442
HapII CCGG 4 cut(s) 443, 1137, 1155, 1338
HinfI GANTC 7 cut(s) 52, 169, 178, 402, 605, 719, 1081
HpaII CCGG 4 cut(s) 443, 1137, 1155, 1338
HphI GGTGA 1 cut(s) 384
Hpy166II GTNNAC 4 cut(s) 190, 1315, 1343, 1440
Hpy188I TCNGA 3 cut(s) 664, 739, 874
Hpy188III TCNNGA 7 cut(s) 56, 77, 218, 372, 513, 949, 1192
Hpy8I GTNNAC 4 cut(s) 190, 1315, 1343, 1440
HpyAV CCTTC 2 cut(s) 53, 193
HpyCH4III ACNGT 2 cut(s) 255, 1319
HpyCH4IV ACGT 3 cut(s) 18, 340, 1110
HpyF10VI GCNNNNNNNGC 7 cut(s) 235, 415, 839, 1016, 1021, 1052, 1055
HpyF3I CTNAG 5 cut(s) 24, 736, 843, 1020, 1347
HpySE526I ACGT 3 cut(s) 18, 340, 1110
Kzo9I GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
LmnI GCTCC 2 cut(s) 28, 234
Lsp1109I GCAGC 6 cut(s) 520, 623, 1030, 1036, 1042, 1058
LweI GCATC 3 cut(s) 518, 668, 1003
MaeI CTAG 5 cut(s) 126, 372, 387, 399, 513
MaeII ACGT 3 cut(s) 18, 340, 1110
MaeIII GTNAC 2 cut(s) 281, 826
MalI GATC 6 cut(s) 208, 391, 666, 693, 1151, 1188
MboI GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
MboII GAAGA 7 cut(s) 365, 370, 542, 861, 976, 1380, 1410
MflI RGATCY 2 cut(s) 664, 1149
MluCI AATT 7 cut(s) 133, 324, 331, 478, 822, 904, 1123
MlyI GAGTC 3 cut(s) 187, 411, 614
MmeI TCCRAC 1 cut(s) 301
Mph1103I ATGCAT 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 7 cut(s) 33, 69, 132, 699, 891, 908, 1107
MslI CAYNNNNRTG 1 cut(s) 1214
MspI CCGG 4 cut(s) 443, 1137, 1155, 1338
MspR9I CCNGG 4 cut(s) 444, 750, 1137, 1155
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 7 cut(s) 235, 415, 839, 1016, 1021, 1052, 1055
NciI CCSGG 3 cut(s) 444, 1137, 1155
NdeII GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
NlaIV GGNNCC 2 cut(s) 230, 571
NmuCI GTSAC 1 cut(s) 826
NsiI ATGCAT 1 cut(s) 996
NspI RCATGY 2 cut(s) 157, 706
PaeI GCATGC 1 cut(s) 157
PagI TCATGA 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 4 cut(s) 52, 169, 719, 1081
PflFI GACNNNGTC 1 cut(s) 573
PinAI ACCGGT 1 cut(s) 1337
PkrI GCNGC 7 cut(s) 535, 613, 1026, 1045, 1048, 1057, 1142
PleI GAGTC 3 cut(s) 186, 410, 613
PpsI GAGTC 3 cut(s) 186, 410, 613
Ppu21I YACGTR 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 569
PsiI TTATAA 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 230, 571
PspPI GGNCC 3 cut(s) 113, 440, 569
PspPPI RGGWCCY 1 cut(s) 569
PstI CTGCAG 2 cut(s) 613, 1048
PsuI RGATCY 2 cut(s) 664, 1149
PsyI GACNNNGTC 1 cut(s) 573
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 1214
SaqAI TTAA 7 cut(s) 33, 69, 132, 699, 891, 908, 1107
SatI GCNGC 7 cut(s) 534, 612, 1025, 1044, 1047, 1056, 1141
Sau3AI GATC 6 cut(s) 206, 389, 664, 691, 1149, 1186
Sau96I GGNCC 3 cut(s) 113, 440, 569
SchI GAGTC 3 cut(s) 187, 411, 614
ScrFI CCNGG 4 cut(s) 444, 750, 1137, 1155
SfaNI GCATC 3 cut(s) 518, 668, 1003
SfcI CTRYAG 2 cut(s) 609, 1044
SinI GGWCC 2 cut(s) 113, 569
SmiMI CAYNNNNRTG 1 cut(s) 1214
SphI GCATGC 1 cut(s) 157
Sse9I AATT 7 cut(s) 133, 324, 331, 478, 822, 904, 1123
SsiI CCGC 6 cut(s) 40, 418, 1140, 1242, 1250, 1359
SspMI CTAG 5 cut(s) 126, 372, 387, 399, 513
StyD4I CCNGG 4 cut(s) 442, 748, 1135, 1153
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 2 cut(s) 255, 1319
TaiI ACGT 3 cut(s) 21, 343, 1113
TaqI TCGA 4 cut(s) 197, 205, 405, 722
TasI AATT 7 cut(s) 133, 324, 331, 478, 822, 904, 1123
TauI GCSGC 1 cut(s) 1143
TfiI GAWTC 4 cut(s) 52, 169, 719, 1081
Tru1I TTAA 7 cut(s) 33, 69, 132, 699, 891, 908, 1107
Tru9I TTAA 7 cut(s) 33, 69, 132, 699, 891, 908, 1107
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 6 cut(s) 533, 611, 1024, 1043, 1046, 1055
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 6 cut(s) 17, 366, 855, 1226, 1232, 1244
Tth111I GACNNNGTC 1 cut(s) 573
VpaK11BI GGWCC 2 cut(s) 113, 569
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 2 cut(s) 331, 478
XbaI TCTAGA 2 cut(s) 371, 512
XceI RCATGY 2 cut(s) 157, 706
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 5 cut(s) 126, 372, 387, 399, 513
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.