Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

18054951 .. 18056824

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTTTCAGTGGATGGTCCAAGTGAGAATGGGTCGGATGCAGCATCAGCTGAGGATAATGATTGGGCTGGTTTTCAGTCTGCTGAAAAGGCATCGACAGCTGAGAAAACTGGTCCATCAAAGGCAGCAGAGAACAATGTCAAATCTTCATCAGGAATTGAGGATCTATTTAAAGATGCACCTTTGTTAACACCTGTTTCAGAGAAACCTCAGAAAGACTTAAAAAATGATATTATGAGTCTTTTTGAGAAGTCGAACATGGTGTCACCCTTCTCTATGCATCAGCAGCAACTAGCAATGCTGGCTCAGCAACAGTCTCTTCTCATGTCCGCGGCAGCTAAATCTGGCGTGGATCAAAAGTTTCCTGGTATTATTCAACAACCCGTGTCGAGTGGAAGCAATTTACCCTCCCAAAGTTGGCCAAACGTTGGCTACCAGTTTCCTGGATTGGTGATGCCTGTAGATGGGCAGGCTGATCTACAGAATGTTTCACAGAGTCAGACAAAGACCATGGGACAAGCACATCCACTGGGGACCTCTGTTCCGTATTCAGCATCTAGCTTTTACAGTATGGCTCAAGTTAGCCCAGTTAATGGCGTGACAAACGATGGGGCGAACAAGACTCAATCACCATCTCCCGTATCATCTTCAACTTCAGCGCAGTCAGGAAAAGATTATGATTTCTCATCTTTAACACAATTGATGTTCGCAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

240

Amino Acids

25.18

Weight (kDa)

4.74

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	428, 593
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	330, 332
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	2 cut(s)	171, 360
AcoI	YGGCCR	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	4 cut(s)	417, 428, 464, 593
AgsI	TTSAA	2 cut(s)	377, 651
AjnI	CCWGG	2 cut(s)	364, 442
AluBI	AGCT	4 cut(s)	50, 101, 338, 561
AluI	AGCT	4 cut(s)	50, 101, 338, 561
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	171, 360
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	4 cut(s)	41, 125, 286, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	3 cut(s)	17, 113, 534
AsuHPI	GGTGA	3 cut(s)	258, 463, 621
AvaII	GGWCC	3 cut(s)	17, 113, 534
BalI	TGGCCA	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	53, 137, 298, 347
BccI	CCATC	5 cut(s)	8, 124, 458, 602, 640
BciT130I	CCWGG	2 cut(s)	366, 444
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	293, 558
BfmI	CTRYAG	2 cut(s)	459, 479
BisI	GCNGC	5 cut(s)	42, 126, 287, 333, 336
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	5 cut(s)	43, 127, 288, 334, 337
Bme1390I	CCNGG	2 cut(s)	366, 444
Bme18I	GGWCC	3 cut(s)	17, 113, 534
BmgT120I	GGNCC	3 cut(s)	17, 113, 534
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	2 cut(s)	366, 444
BmrI	ACTGGG	2 cut(s)	539, 581
BmsI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 444, 563
BmuI	ACTGGG	2 cut(s)	539, 581
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	330, 510
Bsc4I	CCNNNNNNNGG	4 cut(s)	417, 428, 464, 593
Bse1I	ACTGG	4 cut(s)	115, 436, 534, 587
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	366, 444
BseDI	CCNNGG	2 cut(s)	330, 510
BseGI	GGATG	3 cut(s)	19, 43, 523
BseLI	CCNNNNNNNGG	4 cut(s)	417, 428, 464, 593
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	4 cut(s)	42, 93, 224, 320
BseNI	ACTGG	4 cut(s)	115, 436, 534, 587
BseXI	GCAGC	4 cut(s)	53, 137, 298, 347
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	528, 547
BslI	CCNNNNNNNGG	4 cut(s)	417, 428, 464, 593
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	528, 547
BsnI	GGCC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	163, 352, 475
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	2 cut(s)	330, 332
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	4 cut(s)	43, 94, 223, 319
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	171, 360
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	4 cut(s)	115, 436, 534, 587
BssECI	CCNNGG	2 cut(s)	330, 510
BssMI	GATC	3 cut(s)	163, 352, 475
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	366, 444
Bst4CI	ACNGT	3 cut(s)	315, 569, 717
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	303, 471
BstDEI	CTNAG	4 cut(s)	51, 102, 210, 306
BstDSI	CCRYGG	2 cut(s)	330, 510
BstF5I	GGATG	3 cut(s)	19, 43, 523
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	3 cut(s)	166, 355, 478
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	163, 352, 475
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
BstNI	CCWGG	2 cut(s)	366, 444
BstSCI	CCNGG	2 cut(s)	364, 442
BstSFI	CTRYAG	2 cut(s)	459, 479
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	53, 137, 298, 347
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	421
BtgI	CCRYGG	2 cut(s)	330, 510
BtsCI	GGATG	3 cut(s)	19, 43, 523
BtsIMutI	CAGTG	2 cut(s)	15, 527
Cac8I	GCNNGC	2 cut(s)	303, 471
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	3 cut(s)	17, 113, 534
Cfr42I	CCGCGG	1 cut(s)	333
CviAII	CATG	3 cut(s)	259, 325, 511
DdeI	CTNAG	4 cut(s)	51, 102, 210, 306
DpnI	GATC	3 cut(s)	165, 354, 477
DpnII	GATC	3 cut(s)	163, 352, 475
DraI	TTTAAA	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	510
Eco47I	GGWCC	3 cut(s)	17, 113, 534
Eco57I	CTGAAG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	364, 442
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	3 cut(s)	262, 328, 514
FaiI	YATR	7 cut(s)	236, 260, 278, 326, 512, 572, 678
FaqI	GGGAC	2 cut(s)	528, 547
FatI	CATG	3 cut(s)	258, 324, 510
Fnu4HI	GCNGC	5 cut(s)	42, 126, 287, 333, 336
FokI	GGATG	3 cut(s)	26, 50, 510
Fsp4HI	GCNGC	5 cut(s)	42, 126, 287, 333, 336
FspBI	CTAG	2 cut(s)	293, 558
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	5 cut(s)	42, 126, 287, 333, 336
HaeIII	GGCC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	3 cut(s)	262, 328, 514
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	238, 496, 622
HpaI	GTTAAC	1 cut(s)	189
HphI	GGTGA	3 cut(s)	258, 463, 621
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	4 cut(s)	37, 202, 213, 501
Hpy188III	TCNNGA	2 cut(s)	153, 666
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	3 cut(s)	315, 569, 717
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	41, 179, 280
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
HpyF3I	CTNAG	4 cut(s)	51, 102, 210, 306
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	262, 328, 514
HspAI	GCGC	1 cut(s)	659
KspAI	GTTAAC	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	163, 352, 475
Lsp1109I	GCAGC	4 cut(s)	53, 137, 298, 347
LweI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 444, 563
MaeI	CTAG	2 cut(s)	293, 558
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	264, 598
MalI	GATC	3 cut(s)	165, 354, 477
MboI	GATC	3 cut(s)	163, 352, 475
MboII	GAAGA	3 cut(s)	138, 311, 639
MfeI	CAATTG	1 cut(s)	698
MflI	RGATCY	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	3 cut(s)	156, 400, 698
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	3 cut(s)	247, 505, 616
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	46, 154, 219, 418, 547
Mox20I	TGGCCA	1 cut(s)	421
Mph1103I	ATGCAT	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	5 cut(s)	171, 188, 221, 591, 692
Msp20I	TGGCCA	1 cut(s)	421
MspA1I	CMGCKG	3 cut(s)	50, 101, 332
MspR9I	CCNGG	2 cut(s)	366, 444
MunI	CAATTG	1 cut(s)	698
MvaI	CCWGG	2 cut(s)	366, 444
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	163, 352, 475
NlaIII	CATG	3 cut(s)	262, 328, 514
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	264, 598
NsiI	ATGCAT	1 cut(s)	282
PflMI	CCANNNNNTGG	2 cut(s)	428, 593
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	43, 127, 288, 334, 337
PleI	GAGTC	3 cut(s)	246, 504, 616
PpsI	GAGTC	3 cut(s)	246, 504, 616
PpuMI	RGGWCCY	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	364, 442
PspGI	CCWGG	2 cut(s)	364, 442
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	3 cut(s)	17, 113, 534
PspPPI	RGGWCCY	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	50, 101
SacII	CCGCGG	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	171, 188, 221, 591, 692
SatI	GCNGC	5 cut(s)	42, 126, 287, 333, 336
Sau3AI	GATC	3 cut(s)	163, 352, 475
Sau96I	GGNCC	3 cut(s)	17, 113, 534
SchI	GAGTC	3 cut(s)	247, 505, 616
ScrFI	CCNGG	2 cut(s)	366, 444
SetI	ASST	9 cut(s)	52, 103, 184, 196, 211, 340, 429, 539, 563
SfaNI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 444, 563
SfcI	CTRYAG	2 cut(s)	459, 479
Sfr303I	CCGCGG	1 cut(s)	333
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	3 cut(s)	17, 113, 534
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	156, 400, 698
SsiI	CCGC	2 cut(s)	330, 332
SspMI	CTAG	2 cut(s)	293, 558
StyD4I	CCNGG	2 cut(s)	364, 442
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	315, 569, 717
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	95, 254, 389
TasI	AATT	3 cut(s)	156, 400, 698
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	5 cut(s)	171, 188, 221, 591, 692
Tru9I	TTAA	5 cut(s)	171, 188, 221, 591, 692
TscAI	CASTG	2 cut(s)	15, 534
TseFI	GTSAC	2 cut(s)	264, 598
TseI	GCWGC	4 cut(s)	41, 125, 286, 335
Tsp45I	GTSAC	2 cut(s)	264, 598
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	15, 534
Van91I	CCANNNNNTGG	2 cut(s)	428, 593
VpaK11BI	GGWCC	3 cut(s)	17, 113, 534
XspI	CTAG	2 cut(s)	293, 558
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.