Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

45876275 .. 45877087

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTCTTTTCGACAAGTACTCCAATATGGTGTCACCATTCGCTATGCATCAACAGCAACTCGCAATATTGGCTCAGCAGCAGTCTCATAATTTCACGGATGCAGCTAAATCTGCTCAGCAACCTGTGTCAAATGGAAGCAGTTTACCCGCCCATAGTTGGCCAAACATTGGCTACCAAATTCCTGGAATATTGATGATGCCTGGAGATGGACAGGGTGGTATAAAGAATGTTGCACAGGCAAGGACAGCAGGACCGGCAAATATTCCAACAGGAAGCTCTGTTCCATATCCAACGTCTAGCTTTTATTCTATGCCCCAAGCTGATAGCCCAGTTGATGGCCTTACAACTGCTGGAGTGAACACAACTCGGTCACCGGCCGGCTGCAACTTCTTCTACCTCAACACAAATGGGAAAAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

141

Amino Acids

14.92

Weight (kDa)

8.85

Isoelectric Point (pI)

71.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	170, 338
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	161, 378
AcsI	RAATTY	1 cut(s)	180
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	4 cut(s)	159, 170, 209, 338
AjnI	CCWGG	2 cut(s)	184, 202
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	4 cut(s)	107, 279, 303, 323
AluI	AGCT	4 cut(s)	107, 279, 303, 323
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	161, 340, 378
ApeKI	GCWGC	3 cut(s)	79, 104, 384
ApoI	RAATTY	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	27, 366
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	91, 116, 371
BccI	CCATC	2 cut(s)	203, 332
BciT130I	CCWGG	2 cut(s)	186, 204
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	3 cut(s)	80, 105, 385
BlpI	GCTNAGC	2 cut(s)	75, 117
BlsI	GCNGC	3 cut(s)	81, 106, 386
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	186, 204
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmrFI	CCNGG	2 cut(s)	186, 204
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	58, 91, 189
BmuI	ACTGGG	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	225, 375
Bpu1102I	GCTNAGC	2 cut(s)	75, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 170, 209, 338
Bse118I	RCCGGY	3 cut(s)	256, 376, 380
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	186, 204
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	4 cut(s)	159, 170, 209, 338
BseMII	CTCAG	2 cut(s)	89, 131
BseNI	ACTGG	1 cut(s)	332
BseX3I	CGGCCG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	91, 116, 371
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	163, 342, 380
BsiEI	CGRYCG	1 cut(s)	381
BsiSI	CCGG	3 cut(s)	257, 377, 381
BslI	CCNNNNNNNGG	4 cut(s)	159, 170, 209, 338
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	163, 342, 380
Bsp1720I	GCTNAGC	2 cut(s)	75, 117
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	163, 342, 380
BspCNI	CTCAG	2 cut(s)	88, 130
BsrFI	RCCGGY	3 cut(s)	256, 376, 380
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	3 cut(s)	256, 376, 380
Bst2UI	CCWGG	2 cut(s)	186, 204
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	75, 117
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 71, 113, 248, 257
BstNI	CCWGG	2 cut(s)	186, 204
BstPI	GGTNACC	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	184, 202
BstV1I	GCAGC	3 cut(s)	91, 116, 371
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstZI	CGGCCG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	163, 342, 380
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	382
Cfr10I	RCCGGY	3 cut(s)	256, 376, 380
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	19
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	75, 117
EaeI	YGGCCR	2 cut(s)	161, 378
EagI	CGGCCG	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	372
EcoO65I	GGTNACC	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	184, 202
EcoT22I	ATGCAT	1 cut(s)	51
FaiI	YATR	8 cut(s)	29, 47, 90, 156, 224, 289, 314, 424
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	80, 105, 385
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	80, 105, 385
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	3 cut(s)	80, 105, 385
GsuI	CTGGAG	2 cut(s)	225, 375
HaeIII	GGCC	3 cut(s)	163, 342, 380
HapII	CCGG	3 cut(s)	257, 377, 381
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	257, 377, 381
HphI	GGTGA	2 cut(s)	27, 366
Hpy166II	GTNNAC	2 cut(s)	146, 361
Hpy8I	GTNNAC	2 cut(s)	146, 361
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	49, 104, 236, 387
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 71, 113, 248, 257
HpyF3I	CTNAG	2 cut(s)	75, 117
HpySE526I	ACGT	1 cut(s)	296
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Lsp1109I	GCAGC	3 cut(s)	91, 116, 371
LweI	GCATC	3 cut(s)	58, 91, 189
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	33, 372
MboII	GAAGA	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	2 cut(s)	91, 180
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	293, 317
MnlI	CCTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	51
MroNI	GCCGGC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	163
Msp20I	TGGCCA	1 cut(s)	163
MspI	CCGG	3 cut(s)	257, 377, 381
MspR9I	CCNGG	2 cut(s)	186, 204
MvaI	CCWGG	2 cut(s)	186, 204
MwoI	GCNNNNNNNGC	5 cut(s)	55, 71, 113, 248, 257
NaeI	GCCGGC	1 cut(s)	382
NgoMIV	GCCGGC	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	33, 372
NsiI	ATGCAT	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	170, 338
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	81, 106, 386
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	184, 202
PspEI	GGTNACC	1 cut(s)	372
PspGI	CCWGG	2 cut(s)	184, 202
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	3 cut(s)	80, 105, 385
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	186, 204
SetI	ASST	7 cut(s)	109, 127, 281, 299, 305, 325, 402
SfaNI	GCATC	3 cut(s)	58, 91, 189
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	2 cut(s)	91, 180
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	3 cut(s)	69, 192, 265
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	184, 202
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	91, 180
TatI	WGTACW	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	33, 372
TseI	GCWGC	3 cut(s)	79, 104, 384
Tsp45I	GTSAC	2 cut(s)	33, 372
TspGWI	ACGGA	1 cut(s)	113
Van91I	CCANNNNNTGG	2 cut(s)	170, 338
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	180
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.