Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

59504762 .. 59505160

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTGTCACCATTCGCTATGCATCAACAGCAACTCGCAATATTGGCTCAGCAGCAGTCTCATAATTTCACGGATGCAGCTAAATCTGCTCAGCAACCTGTGTCAAATGGAAGCAGTTTACCCGCCCATAGTTGGCCAAACATTGGCTACCAAATTCCTGGAATATTGATGATGCCTGGAGATGGACAGGGTGGTATAAAGAATGTTGCACAGGCAAGGACAGCAGGACCGGCAAATATTCCAACAGGAAGCTCTGTTCCATATCCAACGTCTAGCTTTTATTCTATGCCCCAAGCTGATAGCCCAGTTGATGGCCTTACAACTGCTGGAGTGAACACAACTCGGTCACCGGCCGGCTGCAACTTCTTCTACCTCAACACAAATGGGAAAAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

132

Amino Acids

13.84

Weight (kDa)

8.93

Isoelectric Point (pI)

72.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	143, 311
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	134, 351
AcsI	RAATTY	1 cut(s)	153
AfiI	CCNNNNNNNGG	4 cut(s)	132, 143, 182, 311
AjnI	CCWGG	2 cut(s)	157, 175
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	4 cut(s)	80, 252, 276, 296
AluI	AGCT	4 cut(s)	80, 252, 276, 296
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	134, 313, 351
ApeKI	GCWGC	3 cut(s)	52, 77, 357
ApoI	RAATTY	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	64, 89, 344
BccI	CCATC	2 cut(s)	176, 305
BciT130I	CCWGG	2 cut(s)	159, 177
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	3 cut(s)	53, 78, 358
BlpI	GCTNAGC	2 cut(s)	48, 90
BlsI	GCNGC	3 cut(s)	54, 79, 359
Bme1390I	CCNGG	2 cut(s)	159, 177
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	159, 177
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	3 cut(s)	31, 64, 162
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	2 cut(s)	198, 348
Bpu1102I	GCTNAGC	2 cut(s)	48, 90
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 143, 182, 311
Bse118I	RCCGGY	3 cut(s)	229, 349, 353
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	159, 177
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	4 cut(s)	132, 143, 182, 311
BseMII	CTCAG	2 cut(s)	62, 104
BseNI	ACTGG	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	64, 89, 344
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	3 cut(s)	136, 315, 353
BsiEI	CGRYCG	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	230, 350, 354
BslI	CCNNNNNNNGG	4 cut(s)	132, 143, 182, 311
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	136, 315, 353
Bsp1720I	GCTNAGC	2 cut(s)	48, 90
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	3 cut(s)	136, 315, 353
BspCNI	CTCAG	2 cut(s)	61, 103
BsrFI	RCCGGY	3 cut(s)	229, 349, 353
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	3 cut(s)	229, 349, 353
Bst2UI	CCWGG	2 cut(s)	159, 177
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	48, 90
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	63
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 221, 230
BstNI	CCWGG	2 cut(s)	159, 177
BstPI	GGTNACC	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	157, 175
BstV1I	GCAGC	3 cut(s)	64, 89, 344
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	136, 315, 353
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	355
Cfr10I	RCCGGY	3 cut(s)	229, 349, 353
Cfr13I	GGNCC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	48, 90
EaeI	YGGCCR	2 cut(s)	134, 351
EagI	CGGCCG	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	345
EcoO65I	GGTNACC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	157, 175
EcoT22I	ATGCAT	1 cut(s)	24
FaiI	YATR	7 cut(s)	20, 63, 129, 197, 262, 287, 397
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	53, 78, 358
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	53, 78, 358
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	53, 78, 358
GsuI	CTGGAG	2 cut(s)	198, 348
HaeIII	GGCC	3 cut(s)	136, 315, 353
HapII	CCGG	3 cut(s)	230, 350, 354
HpaII	CCGG	3 cut(s)	230, 350, 354
HphI	GGTGA	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	119, 334
Hpy8I	GTNNAC	2 cut(s)	119, 334
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	22, 77, 209, 360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 221, 230
HpyF3I	CTNAG	2 cut(s)	48, 90
HpySE526I	ACGT	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	64, 89, 344
LweI	GCATC	3 cut(s)	31, 64, 162
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	6, 345
MboII	GAAGA	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	2 cut(s)	64, 153
MluNI	TGGCCA	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	266, 290
MnlI	CCTC	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	136
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	3 cut(s)	230, 350, 354
MspR9I	CCNGG	2 cut(s)	159, 177
MvaI	CCWGG	2 cut(s)	159, 177
MwoI	GCNNNNNNNGC	5 cut(s)	28, 44, 86, 221, 230
NaeI	GCCGGC	1 cut(s)	355
NgoMIV	GCCGGC	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	6, 345
NsiI	ATGCAT	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	355
PflMI	CCANNNNNTGG	2 cut(s)	143, 311
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	54, 79, 359
Psp6I	CCWGG	2 cut(s)	157, 175
PspEI	GGTNACC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	157, 175
PspPI	GGNCC	1 cut(s)	227
SatI	GCNGC	3 cut(s)	53, 78, 358
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	159, 177
SetI	ASST	7 cut(s)	82, 100, 254, 272, 278, 298, 375
SfaNI	GCATC	3 cut(s)	31, 64, 162
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	2 cut(s)	64, 153
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	3 cut(s)	42, 165, 238
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	157, 175
TaiI	ACGT	1 cut(s)	272
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	64, 153
TseFI	GTSAC	2 cut(s)	6, 345
TseI	GCWGC	3 cut(s)	52, 77, 357
Tsp45I	GTSAC	2 cut(s)	6, 345
TspGWI	ACGGA	1 cut(s)	86
Van91I	CCANNNNNTGG	2 cut(s)	143, 311
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.