Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

13982640 .. 13985979

Gene Structure 3340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0151300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTAGGGGAAAGATACATATTTCAAGGATAGAGAACCGAACCACCAGGCAAGTGACTTTTGCGAAACGCAGAGCTGGGCTTCTGAAGAAGACTCATGAGCTTTCTGTGCTGTGTGATGTCCAGATCGGCCTTGTCATCTTCTCAAGCACTGGGAAGATGTTTCAGTACTGCAGTGACTCAACAAGCATGGAGGAAATTATAAGAAGGTACCAGTATGCTTCAGGGACACGTATACCACAACACAGTGACACGGACTTTTTGAATGCTGAGATAAGAAAGATCAGGAAAGAAACTCAGGACCTCCATTTGAGCTTGCAACGCTACACCGGTGAGGATCTGAGTTGTGTGCGATTTGAGGATTTGGAGGAGCTCGAAAATCGGCTAGAGGAGTCTGTCAACAGGGTTAGAGCTAGGAAGTTTGAGATCTTGCAACAAGAGGTTCATAATCTTCGCTTAAGTACCAAACAGAGGGAGGAACAGAATGATGAACTATGCCATCTGGCTGCAGTCTTTGCTCATCAGCACCATTATCAGCAGCAAATGGAAATGGAACCGAAATCTGAGGAGCATCGACAGCTAATGGAACAATTCCCATTCTGTGGTGAAGAACAGCCTTTGCTTCAGCTTGCAACTACATCCATGCAGCCTCAGTTTGCCTACCAGGCTAGTACTAGTTCTCTCCCGCCTAATCCACCACAGCTTCACGATTTCAGTCTGAACACCCCCATCTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

246

Amino Acids

28.84

Weight (kDa)

6.14

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 167	5.3e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	107, 207, 608
AfaI	GTAC	4 cut(s)	170, 212, 463, 673
AfiI	CCNNNNNNNGG	2 cut(s)	471, 602
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	27, 265
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	47, 663
AluBI	AGCT	8 cut(s)	77, 103, 315, 373, 413, 580, 628, 703
AluI	AGCT	8 cut(s)	77, 103, 315, 373, 413, 580, 628, 703
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	506, 538, 646
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	344, 617
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	493, 550, 658
BccI	CCATC	2 cut(s)	507, 737
BciT130I	CCWGG	2 cut(s)	49, 665
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	4 cut(s)	386, 414, 669, 675
BfmI	CTRYAG	2 cut(s)	172, 507
BfrI	CTTAAG	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	665
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	3 cut(s)	507, 539, 647
BlsI	GCNGC	3 cut(s)	508, 540, 648
BmcAI	AGTACT	2 cut(s)	170, 673
Bme1390I	CCNGG	2 cut(s)	49, 665
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	212, 555
BmrFI	CCNGG	2 cut(s)	49, 665
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 602
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	157, 214
BseBI	CCWGG	2 cut(s)	49, 665
BseGI	GGATG	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	471, 602
BseMII	CTCAG	5 cut(s)	261, 311, 332, 555, 665
BseNI	ACTGG	2 cut(s)	157, 214
BseRI	GAGGAG	3 cut(s)	383, 404, 581
BseXI	GCAGC	3 cut(s)	493, 550, 658
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	471, 602
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	126, 282, 337, 426
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	262, 310, 333, 556, 664
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	212, 555
BspMAI	CTGCAG	2 cut(s)	176, 511
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	157, 214
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	4 cut(s)	126, 282, 337, 426
BssNAI	GTATAC	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	49, 665
Bst4CI	ACNGT	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	317, 630
BstDEI	CTNAG	5 cut(s)	270, 297, 341, 564, 651
BstF5I	GGATG	1 cut(s)	638
BstKTI	GATC	4 cut(s)	129, 285, 340, 429
BstMBI	GATC	4 cut(s)	126, 282, 337, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 321, 515, 577, 665
BstNI	CCWGG	2 cut(s)	49, 665
BstSCI	CCNGG	2 cut(s)	47, 663
BstSFI	CTRYAG	2 cut(s)	172, 507
BstV1I	GCAGC	3 cut(s)	493, 550, 658
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	337, 426
BstYI	RGATCY	2 cut(s)	337, 426
BstZ17I	GTATAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	638
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	150, 181, 253
Cac8I	GCNNGC	2 cut(s)	317, 630
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	4 cut(s)	169, 211, 462, 672
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	98, 190, 643
CviQI	GTAC	4 cut(s)	169, 211, 462, 672
DdeI	CTNAG	5 cut(s)	270, 297, 341, 564, 651
DpnI	GATC	4 cut(s)	128, 284, 339, 428
DpnII	GATC	4 cut(s)	126, 282, 337, 426
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	107, 207, 608
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	47, 663
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	101, 193, 646
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	3 cut(s)	97, 189, 642
FauI	CCCGC	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	507, 539, 647
FokI	GGATG	1 cut(s)	625
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	507, 539, 647
FspBI	CTAG	4 cut(s)	386, 414, 669, 675
GluI	GCNGC	3 cut(s)	507, 539, 647
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	3 cut(s)	101, 193, 646
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	94, 179, 392
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	344, 617
Hpy166II	GTNNAC	2 cut(s)	236, 400
Hpy188I	TCNGA	4 cut(s)	87, 342, 565, 720
Hpy188III	TCNNGA	5 cut(s)	98, 124, 286, 299, 707
Hpy8I	GTNNAC	2 cut(s)	236, 400
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	6 cut(s)	174, 319, 433, 509, 632, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 321, 515, 577, 665
HpyF3I	CTNAG	5 cut(s)	270, 297, 341, 564, 651
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	101, 193, 646
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	126, 282, 337, 426
LmnI	GCTCC	2 cut(s)	370, 568
Lsp1109I	GCAGC	3 cut(s)	493, 550, 658
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	386, 414, 669, 675
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	55, 176, 248
MalI	GATC	4 cut(s)	128, 284, 339, 428
MboI	GATC	4 cut(s)	126, 282, 337, 426
MboII	GAAGA	6 cut(s)	100, 103, 133, 169, 443, 620
MflI	RGATCY	2 cut(s)	337, 426
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	198, 590
MlyI	GAGTC	3 cut(s)	88, 173, 401
MseI	TTAA	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	49, 665
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	49, 665
MwoI	GCNNNNNNNGC	5 cut(s)	109, 321, 515, 577, 665
NdeII	GATC	4 cut(s)	126, 282, 337, 426
NlaIII	CATG	3 cut(s)	101, 193, 646
NlaIV	GGNNCC	2 cut(s)	212, 555
NmuCI	GTSAC	3 cut(s)	55, 176, 248
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	602
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	508, 540, 648
PleI	GAGTC	3 cut(s)	88, 173, 400
PpsI	GAGTC	3 cut(s)	88, 173, 400
Ppu21I	YACGTR	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	47, 663
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	47, 663
PspN4I	GGNNCC	2 cut(s)	212, 555
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	176, 511
PsuI	RGATCY	2 cut(s)	337, 426
RsaI	GTAC	4 cut(s)	170, 212, 463, 673
RsaNI	GTAC	4 cut(s)	169, 211, 462, 672
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	507, 539, 647
Sau3AI	GATC	4 cut(s)	126, 282, 337, 426
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	2 cut(s)	170, 673
SchI	GAGTC	3 cut(s)	88, 173, 401
ScrFI	CCNGG	2 cut(s)	49, 665
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	2 cut(s)	172, 507
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	145, 457
SmoI	CTYRAG	2 cut(s)	145, 457
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	2 cut(s)	198, 590
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	4 cut(s)	386, 414, 669, 675
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	47, 663
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	375, 574
TasI	AATT	2 cut(s)	198, 590
TatI	WGTACW	2 cut(s)	168, 671
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	3 cut(s)	157, 181, 253
TseFI	GTSAC	3 cut(s)	55, 176, 248
TseI	GCWGC	3 cut(s)	506, 538, 646
Tsp45I	GTSAC	3 cut(s)	55, 176, 248
TspDTI	ATGAA	2 cut(s)	434, 504
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	157, 181, 253
Van91I	CCANNNNNTGG	1 cut(s)	602
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	4 cut(s)	386, 414, 669, 675
ZrmI	AGTACT	2 cut(s)	170, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.