Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

51545852 .. 51561580

Gene Structure 15729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAAAAGACAAATAGTTACTGGGAAGCAGAACTACCTCCAAACTACGACAGAGTTGGCATTGAAAGTTTTATTCGTGCAAAGTATGAAGATAAGAGATGGGTCGCTAAAGATGGAAAACCAAAATCACCTTGTAGAGGACGCGAGCAAACTGCTTGCAAACATTGGCAGAGACCTGCAAAAAGTCCTTTTCCGAAAGGCAAGAAAAGAACCCGTGACGAGGTTGGTGCTCTCTCCTCGTCCACGGCGCTGAAGAAGAAGTCGGGTCACGGGACTACCCCAACGATCGCACCCCGCGGTTGGTGCTCTCCTCGTCCACGGCGCTTGAAGAAGAAGTCAGGTCACGGGACTACCCCAACGACGACGCACCCCGCGGTGCTGGCACGCCTGCGCAACTACTCGCTCAAAAGAGACTGTTTGCACACCAGCTGGTTTTGGAGCCAAACAAGACCTGTGGAAAGCAGTGGGCATGGGTATATAGGAAACTCTGAAAAGAAATTTGAGGAAAGGAAGAACATACAGACAGCCAGTAGAAGAGAAACTGTTCCTGCTGGAAGAATCAGTCTTTCTGTTCCTACTGAACATAAACCAGAAAATGTTCGGAAAATAGAACCAGCAGTTCCACAGGCTGAAGCAATAAAGCCAGCTGCTGAACTTGCCCCTCCAAAGATTGATTTTGCTACTAACCTTTTCGGCATGCCCTCAGTCGTAGATAGTCCTAGTGAGAATAGCTCATCAGATGCAGCACCAGCTGACGATAATGATTGGGCAGGTTTCCAGTCGGCTAACGAAGCATCAAAGATTGAGAAAACCAGTCCACCAAAAGCAGCAGAAAGCAGTAGCAAGCCTGTTGCAGAGAAACCCAAGAAAGATCAACTGGCAATATTGGCTCAGCAGCAGTCTCATAATTTCACGGATGCAGCTAAATCTGCTCAGCAACCTGTGTCAAATGGAAGCAGTTTACCCTCCCATAGTTGGCCAAACATTGGCTACCAAATTCCTGGAATGATGATGCCTGGAGATGGACAGGGTGGTATAAAGAATGTTGCACAGGCAAGGACAGCAGGACCGGCAAATCCAACAGGAAGCTCTGTTCCATATCCAACGTCTAGCTTTTATTCTATGCCCCAAGCTGATAGCCCAGTTAAGTGGCGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

386

Amino Acids

42.2

Weight (kDa)

9.85

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	2 cut(s)	184, 761
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccII	CGCG	3 cut(s)	144, 297, 374
AciI	CCGC	5 cut(s)	295, 297, 372, 374, 1153
AcoI	YGGCCR	1 cut(s)	977
AcsI	RAATTY	2 cut(s)	497, 996
AcuI	CTGAAG	2 cut(s)	272, 651
AfiI	CCNNNNNNNGG	6 cut(s)	137, 220, 300, 975, 986, 1022
AgsI	TTSAA	2 cut(s)	65, 328
AjnI	CCWGG	2 cut(s)	1000, 1015
AloI	GAACNNNNNNTCC	2 cut(s)	1077, 1109
AluBI	AGCT	8 cut(s)	429, 647, 732, 752, 923, 1089, 1113, 1133
AluI	AGCT	8 cut(s)	429, 647, 732, 752, 923, 1089, 1113, 1133
Alw21I	GWGCWC	2 cut(s)	232, 308
Alw26I	GTCTC	3 cut(s)	166, 405, 906
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	977
ApeKI	GCWGC	5 cut(s)	647, 743, 827, 895, 920
ApoI	RAATTY	2 cut(s)	497, 996
Asp700I	GAANNNNTTC	2 cut(s)	543, 597
AspLEI	GCGC	3 cut(s)	250, 324, 393
AspS9I	GGNCC	1 cut(s)	1067
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	1067
BalI	TGGCCA	1 cut(s)	979
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
Bbv12I	GWGCWC	2 cut(s)	232, 308
BbvI	GCAGC	5 cut(s)	634, 755, 839, 907, 932
BccI	CCATC	3 cut(s)	93, 107, 1016
BceAI	ACGGC	2 cut(s)	261, 335
BcgI	CGANNNNNNTGC	4 cut(s)	134, 168, 209, 243
BciT130I	CCWGG	2 cut(s)	1002, 1017
BcoDI	GTCTC	3 cut(s)	166, 405, 906
BfaI	CTAG	2 cut(s)	720, 1110
BfoI	RGCGCY	2 cut(s)	251, 325
BfuAI	ACCTGC	2 cut(s)	184, 761
BisI	GCNGC	5 cut(s)	648, 744, 828, 896, 921
BlpI	GCTNAGC	2 cut(s)	891, 933
BlsI	GCNGC	5 cut(s)	649, 745, 829, 897, 922
Bme1390I	CCNGG	2 cut(s)	1002, 1017
Bme18I	GGWCC	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	1002, 1017
BmrI	ACTGGG	2 cut(s)	31, 1136
BmsI	GCATC	4 cut(s)	730, 803, 907, 1002
BmuI	ACTGGG	2 cut(s)	31, 1136
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	1038
Bpu1102I	GCTNAGC	2 cut(s)	891, 933
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	4 cut(s)	243, 295, 317, 372
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 220, 300, 975, 986, 1022
Bse118I	RCCGGY	1 cut(s)	1069
Bse1I	ACTGG	6 cut(s)	26, 528, 778, 813, 882, 1142
BseBI	CCWGG	2 cut(s)	1002, 1017
BseDI	CCNNGG	4 cut(s)	243, 295, 317, 372
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	6 cut(s)	137, 220, 300, 975, 986, 1022
BseMII	CTCAG	3 cut(s)	717, 905, 947
BseNI	ACTGG	6 cut(s)	26, 528, 778, 813, 882, 1142
BseRI	GAGGAG	2 cut(s)	226, 300
BseXI	GCAGC	5 cut(s)	634, 755, 839, 907, 932
Bsh1236I	CGCG	3 cut(s)	144, 297, 374
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	979
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	232, 308
BsiSI	CCGG	1 cut(s)	1070
BslFI	GGGAC	2 cut(s)	286, 361
BslI	CCNNNNNNNGG	6 cut(s)	137, 220, 300, 975, 986, 1022
BsmAI	GTCTC	3 cut(s)	166, 405, 906
BsmFI	GGGAC	2 cut(s)	286, 361
BsnI	GGCC	1 cut(s)	979
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	232, 308
Bsp143I	GATC	2 cut(s)	285, 871
Bsp1720I	GCTNAGC	2 cut(s)	891, 933
BspACI	CCGC	5 cut(s)	295, 297, 372, 374, 1153
BspANI	GGCC	1 cut(s)	979
BspCNI	CTCAG	3 cut(s)	716, 904, 946
BspFNI	CGCG	3 cut(s)	144, 297, 374
BspLI	GGNNCC	1 cut(s)	440
BspMI	ACCTGC	2 cut(s)	184, 761
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	1069
BsrI	ACTGG	6 cut(s)	26, 528, 778, 813, 882, 1142
BssAI	RCCGGY	1 cut(s)	1069
BssECI	CCNNGG	4 cut(s)	243, 295, 317, 372
BssMI	GATC	2 cut(s)	285, 871
Bst2UI	CCWGG	2 cut(s)	1002, 1017
Bst4CI	ACNGT	2 cut(s)	416, 544
Bst6I	CTCTTC	1 cut(s)	529
BstC8I	GCNNGC	8 cut(s)	146, 157, 381, 385, 389, 645, 698, 845
BstDEI	CTNAG	3 cut(s)	703, 891, 933
BstDSI	CCRYGG	4 cut(s)	243, 295, 317, 372
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	922
BstFNI	CGCG	3 cut(s)	144, 297, 374
BstH2I	RGCGCY	2 cut(s)	251, 325
BstHHI	GCGC	3 cut(s)	250, 324, 393
BstKTI	GATC	2 cut(s)	288, 874
BstMAI	GTCTC	3 cut(s)	166, 405, 906
BstMBI	GATC	2 cut(s)	285, 871
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	9 cut(s)	303, 380, 656, 749, 791, 887, 929, 1061, 1070
BstNI	CCWGG	2 cut(s)	1002, 1017
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	1000, 1015
BstUI	CGCG	3 cut(s)	144, 297, 374
BstV1I	GCAGC	5 cut(s)	634, 755, 839, 907, 932
BstXI	CCANNNNNNTGG	2 cut(s)	1001, 1149
BsuRI	GGCC	1 cut(s)	979
BtgI	CCRYGG	4 cut(s)	243, 295, 317, 372
BtsCI	GGATG	1 cut(s)	922
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	2 cut(s)	184, 761
Cac8I	GCNNGC	8 cut(s)	146, 157, 381, 385, 389, 645, 698, 845
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	3 cut(s)	250, 324, 393
Cfr10I	RCCGGY	1 cut(s)	1069
Cfr13I	GGNCC	1 cut(s)	1067
Cfr42I	CCGCGG	2 cut(s)	298, 375
CseI	GACGC	2 cut(s)	150, 373
CspCI	CAANNNNNGTGG	4 cut(s)	306, 341, 435, 470
CviAII	CATG	2 cut(s)	470, 697
DdeI	CTNAG	3 cut(s)	703, 891, 933
DpnI	GATC	2 cut(s)	287, 873
DpnII	GATC	2 cut(s)	285, 871
EaeI	YGGCCR	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	272, 651
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	1000, 1015
FaeI	CATG	2 cut(s)	473, 700
FaqI	GGGAC	2 cut(s)	286, 361
FatI	CATG	2 cut(s)	469, 696
FauI	CCCGC	2 cut(s)	302, 379
Fnu4HI	GCNGC	5 cut(s)	648, 744, 828, 896, 921
FokI	GGATG	1 cut(s)	929
Fsp4HI	GCNGC	5 cut(s)	648, 744, 828, 896, 921
FspBI	CTAG	2 cut(s)	720, 1110
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	3 cut(s)	249, 323, 392
GluI	GCNGC	5 cut(s)	648, 744, 828, 896, 921
GsuI	CTGGAG	1 cut(s)	1038
HaeII	RGCGCY	2 cut(s)	251, 325
HaeIII	GGCC	1 cut(s)	979
HapII	CCGG	1 cut(s)	1070
HgaI	GACGC	2 cut(s)	150, 373
HhaI	GCGC	3 cut(s)	250, 324, 393
Hin1II	CATG	2 cut(s)	473, 700
Hin6I	GCGC	3 cut(s)	248, 322, 391
HinP1I	GCGC	3 cut(s)	248, 322, 391
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	1 cut(s)	1070
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	4 cut(s)	243, 317, 818, 962
Hpy188I	TCNGA	4 cut(s)	195, 490, 603, 739
Hpy8I	GTNNAC	4 cut(s)	243, 317, 818, 962
Hpy99I	CGWCG	2 cut(s)	364, 367
HpyCH4III	ACNGT	2 cut(s)	416, 544
HpyCH4IV	ACGT	1 cut(s)	1106
HpyCH4V	TGCA	8 cut(s)	80, 159, 179, 421, 743, 854, 920, 1049
HpyF10VI	GCNNNNNNNGC	9 cut(s)	303, 380, 656, 749, 791, 887, 929, 1061, 1070
HpyF3I	CTNAG	3 cut(s)	703, 891, 933
HpySE526I	ACGT	1 cut(s)	1106
Hsp92II	CATG	2 cut(s)	473, 700
HspAI	GCGC	3 cut(s)	248, 322, 391
KspI	CCGCGG	2 cut(s)	298, 375
Kzo9I	GATC	2 cut(s)	285, 871
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	5 cut(s)	634, 755, 839, 907, 932
LweI	GCATC	4 cut(s)	730, 803, 907, 1002
MaeI	CTAG	2 cut(s)	720, 1110
MaeII	ACGT	1 cut(s)	1106
MaeIII	GTNAC	4 cut(s)	17, 215, 266, 341
MalI	GATC	2 cut(s)	287, 873
MboI	GATC	2 cut(s)	285, 871
MboII	GAAGA	8 cut(s)	101, 265, 268, 340, 343, 523, 546, 567
MhlI	GDGCHC	2 cut(s)	232, 308
MlsI	TGGCCA	1 cut(s)	979
MluCI	AATT	4 cut(s)	497, 907, 996, 1156
MluNI	TGGCCA	1 cut(s)	979
MmeI	TCCRAC	2 cut(s)	1103, 1127
MnlI	CCTC	9 cut(s)	48, 131, 214, 247, 321, 496, 672, 712, 976
Mox20I	TGGCCA	1 cut(s)	979
MroXI	GAANNNNTTC	2 cut(s)	543, 597
MscI	TGGCCA	1 cut(s)	979
MseI	TTAA	1 cut(s)	1146
Msp20I	TGGCCA	1 cut(s)	979
MspA1I	CMGCKG	5 cut(s)	297, 374, 429, 647, 752
MspI	CCGG	1 cut(s)	1070
MspR9I	CCNGG	2 cut(s)	1002, 1017
MvaI	CCWGG	2 cut(s)	1002, 1017
MvnI	CGCG	3 cut(s)	144, 297, 374
MwoI	GCNNNNNNNGC	9 cut(s)	303, 380, 656, 749, 791, 887, 929, 1061, 1070
NdeII	GATC	2 cut(s)	285, 871
NlaIII	CATG	2 cut(s)	473, 700
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	3 cut(s)	215, 266, 341
NsbI	TGCGCA	1 cut(s)	392
NspI	RCATGY	1 cut(s)	700
PaeI	GCATGC	1 cut(s)	700
PdmI	GAANNNNTTC	2 cut(s)	543, 597
PfeI	GAWTC	1 cut(s)	558
PflMI	CCANNNNNTGG	1 cut(s)	986
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	5 cut(s)	649, 745, 829, 897, 922
Ple19I	CGATCG	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	1000, 1015
PspGI	CCWGG	2 cut(s)	1000, 1015
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	1067
PstNI	CAGNNNCTG	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	288
PvuII	CAGCTG	3 cut(s)	429, 647, 752
SacII	CCGCGG	2 cut(s)	298, 375
SaqAI	TTAA	1 cut(s)	1146
SatI	GCNGC	5 cut(s)	648, 744, 828, 896, 921
Sau3AI	GATC	2 cut(s)	285, 871
Sau96I	GGNCC	1 cut(s)	1067
ScrFI	CCNGG	2 cut(s)	1002, 1017
SduI	GDGCHC	2 cut(s)	232, 308
SfaNI	GCATC	4 cut(s)	730, 803, 907, 1002
Sfr303I	CCGCGG	2 cut(s)	298, 375
SgrBI	CCGCGG	2 cut(s)	298, 375
SinI	GGWCC	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	4 cut(s)	497, 907, 996, 1156
SsiI	CCGC	5 cut(s)	295, 297, 372, 374, 1153
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	2 cut(s)	720, 1110
StyD4I	CCNGG	2 cut(s)	1000, 1015
TaaI	ACNGT	2 cut(s)	416, 544
TaiI	ACGT	1 cut(s)	1109
TasI	AATT	4 cut(s)	497, 907, 996, 1156
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	1 cut(s)	1146
Tru9I	TTAA	1 cut(s)	1146
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	3 cut(s)	215, 266, 341
TseI	GCWGC	5 cut(s)	647, 743, 827, 895, 920
Tsp45I	GTSAC	3 cut(s)	215, 266, 341
TspDTI	ATGAA	2 cut(s)	17, 102
TspGWI	ACGGA	1 cut(s)	929
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	1 cut(s)	1067
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	2 cut(s)	497, 996
XceI	RCATGY	1 cut(s)	700
XmnI	GAANNNNTTC	2 cut(s)	543, 597
XspI	CTAG	2 cut(s)	720, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.