Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Reverse (-)

22096920 .. 22099851

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54430.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATCCAGCAGATTCCGATCATCCACAGCTTCCAAACATCAAGATCCATCACCCTCCATCTCCACGTCACTCTCACCATCACCACTCCTCATCTACTCCCTCCTCCGCCGCAACTCCAACACCAACCGCCGGAGCTCGTCGTAAAATCGGAGTCGCAGTTGATCTCTCCGAAGAAAGCTCTTTCGCCGTTCGTTGGGCTGTAGATCACTACATCCGTCCCGGAGACGCCGTTGTTCTTCTCCACGTTTCTCCAACCTCCGTCCTCTTCGGTGCCGATTGGGGACCTCTCCCTCTGAAAACTCAAATTGAAGATCCAAACGCTCAACCTCAACCTAGTCAAGAGGATTTTGATGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAACCGTTGAAGGAGTTAGGGTTTCCTTATAAGATCCATATAGTGAAAGATCATGATATGAGAGAGAGATTATGTCTTGAGATTGAGAGGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTTTTGGTGCTGAGAAAAAAAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTGTTCATCACTGTGTTTGTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTGTGCCTATTGTTACTGTCAAGTCTGGTGGAGATGATGATGGAGATGTTGTTGCTGCTTCTGCTTCTGCTCATCATGAACACATCAAAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

242

Amino Acids

26.2

Weight (kDa)

6.07

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	47 - 203	1.2e-23	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	4 cut(s)	108, 111, 129, 377
AclWI	GGATC	4 cut(s)	40, 308, 387, 415
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	131, 195
AgsI	TTSAA	3 cut(s)	311, 366, 397
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	5 cut(s)	31, 137, 180, 386, 550
AluI	AGCT	5 cut(s)	31, 137, 180, 386, 550
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	4 cut(s)	40, 308, 387, 415
ApeKI	GCWGC	1 cut(s)	686
AspS9I	GGNCC	2 cut(s)	284, 629
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	44, 68, 74
AvaII	GGWCC	2 cut(s)	284, 629
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	6 cut(s)	57, 67, 87, 536, 620, 665
BceAI	ACGGC	2 cut(s)	173, 215
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	336, 383
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	111, 687
BlsI	GCNGC	2 cut(s)	112, 688
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	2 cut(s)	284, 629
BmgBI	CACGTC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	284, 629
BmiI	GGNNCC	2 cut(s)	274, 285
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	8 cut(s)	144, 174, 216, 246, 392, 422, 666, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 195
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	2 cut(s)	22, 213
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	131, 195
BseMII	CTCAG	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	79, 94
BseXI	GCAGC	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	132, 222
BslFI	GGGAC	2 cut(s)	204, 297
BslI	CCNNNNNNNGG	2 cut(s)	131, 195
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	204, 297
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
BspACI	CCGC	4 cut(s)	108, 111, 129, 377
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	439, 706
BspLI	GGNNCC	2 cut(s)	274, 285
BspPI	GGATC	4 cut(s)	40, 308, 387, 415
BspT107I	GGYRCC	1 cut(s)	272
BssMI	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	393, 572, 584, 649
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	2 cut(s)	485, 522
BstF5I	GGATG	2 cut(s)	22, 213
BstKTI	GATC	9 cut(s)	22, 48, 166, 208, 316, 382, 423, 439, 622
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 552, 692
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	673
BstX2I	RGATCY	4 cut(s)	45, 313, 379, 420
BstYI	RGATCY	4 cut(s)	45, 313, 379, 420
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	22, 213
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	2 cut(s)	439, 706
Cfr13I	GGNCC	2 cut(s)	284, 629
CseI	GACGC	1 cut(s)	236
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	2 cut(s)	440, 707
CviJI	RGCY	8 cut(s)	31, 137, 180, 200, 386, 478, 550, 555
CviKI_1	RGCY	8 cut(s)	31, 137, 180, 200, 386, 478, 550, 555
DdeI	CTNAG	2 cut(s)	485, 522
DpnI	GATC	9 cut(s)	21, 47, 165, 207, 315, 381, 422, 438, 621
DpnII	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	284, 629
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	443, 710
FaiI	YATR	8 cut(s)	417, 426, 428, 441, 446, 460, 500, 708
FaqI	GGGAC	2 cut(s)	204, 297
FatI	CATG	2 cut(s)	439, 706
Fnu4HI	GCNGC	2 cut(s)	111, 687
FokI	GGATG	2 cut(s)	9, 200
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	111, 687
FspBI	CTAG	2 cut(s)	336, 383
GluI	GCNGC	2 cut(s)	111, 687
HapII	CCGG	2 cut(s)	132, 222
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	443, 710
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	3 cut(s)	4, 14, 153
HpaII	CCGG	2 cut(s)	132, 222
HphI	GGTGA	3 cut(s)	44, 68, 74
Hpy188I	TCNGA	4 cut(s)	19, 152, 172, 297
Hpy188III	TCNNGA	7 cut(s)	43, 341, 440, 464, 614, 623, 707
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	4 cut(s)	393, 572, 584, 649
HpyCH4IV	ACGT	2 cut(s)	67, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 552, 692
HpyF3I	CTNAG	2 cut(s)	485, 522
HpySE526I	ACGT	2 cut(s)	67, 246
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	443, 710
Kzo9I	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	7 cut(s)	21, 145, 235, 606, 627, 642, 645
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	2 cut(s)	336, 383
MaeII	ACGT	2 cut(s)	67, 246
MaeIII	GTNAC	2 cut(s)	68, 643
MalI	GATC	9 cut(s)	21, 47, 165, 207, 315, 381, 422, 438, 621
MboI	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
MboII	GAAGA	4 cut(s)	185, 230, 259, 323
MflI	RGATCY	4 cut(s)	45, 313, 379, 420
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	143, 278
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	2 cut(s)	132, 222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	383, 552, 692
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
NlaIII	CATG	2 cut(s)	443, 710
NlaIV	GGNNCC	2 cut(s)	274, 285
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	2 cut(s)	439, 706
PfeI	GAWTC	2 cut(s)	4, 14
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	112, 688
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	274, 285
PspPI	GGNCC	2 cut(s)	284, 629
PspPPI	RGGWCCY	1 cut(s)	284
PsuI	RGATCY	4 cut(s)	45, 313, 379, 420
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	139
SatI	GCNGC	2 cut(s)	111, 687
Sau3AI	GATC	9 cut(s)	19, 45, 163, 205, 313, 379, 420, 436, 619
Sau96I	GGNCC	2 cut(s)	284, 629
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	284, 629
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	108, 111, 129, 377
SspMI	CTAG	2 cut(s)	336, 383
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	4 cut(s)	393, 572, 584, 649
TaiI	ACGT	2 cut(s)	70, 249
TasI	AATT	1 cut(s)	306
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	4, 14
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	17, 566, 723
TspGWI	ACGGA	2 cut(s)	206, 250
TspRI	CASTG	1 cut(s)	587
VpaK11BI	GGWCC	2 cut(s)	284, 629
XspI	CTAG	2 cut(s)	336, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.