Rorug05G0154700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006464
Physical Location & Seq
Reverse (-)
14392857 .. 14395404
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0154700.1

Sequence Viewer

Length: 2382 bp
ATGTTTTTGGCATCGTCATGCCTGAACACGAGCAGCATTGTGAAATCATGCATGGAGGAAGAGAGACAAGTGCTTCTCAACTTTAAACAAGATCTCACTGATCCGTCTGGTAGGCTTTCTTCCTGGGTGGGTCATCAATGTTGTCGATGGAGAGGCATTTCATGCAACAACTGCACTGGTCATGTTGCAATCATTGACCTCCGAAATCCATATCCATACATTGAGTATAACGATCTGTGGACCTCCGCAGGTTACTTAGACTTGAGCAACAATTACTTCAAAGGGATTCACATTCCCAACTTCATTGGCCAGCTTACAAGTTTGAGGTATCTCAATCTCTCGCACAATTCATTTTGGGGAGAGATTCCCCCATCTCTTTGTAACCTCTCAAACTTGAACTATCTTGACCTCAGTTCTATTTATCCTTCTTCCAAAAACTTGAATTGGCTTTCTCATCTCTCTTCCCTAAAGTACCTCAATCTTAGAGGTGTGGACCTTAGCAGCACAGGAGTAAGTTGGCTACATGATGTCAACATGCTTCCTTCACTCTTGGAGTTGCATTTGTCTTCTTGCCAAATTAGTGGAAACCAGCTTCCACTCTCGCTGCCCACAATTAACTTCACATCACTTTTGGTCCTCGATATGTCATTTAACGATATTAATTCTTCGTTTCCTAAATGGATGTTTAATCTTACTAGTCTTACAAAACTTGATCTTGGGGGTAATCCTTTCATTCGCCCCTCTCTTGATGAATTTGTAAGACTAAAATCTCTAGAACACCTTGACTTATCGAGTATTGGACTCAAAGGTCAATTATTTCCCAAATTCTTTGGAAATTTGTGCAAGCTAAAGTCATTAGATCTTCCAGCCAACGACTTTGATGGGGGGATTGAAGAGTTTTTGAGTGGTTTTTCAAATTGTTCATTTAATAGAATGGAGTCACTAGATTTATCTAGCTGTGGGCTGGTAGGCAAATTCCCTAGTTTGATGCAAATGTTGAAAAGCCTGCAATATCTCTCACTCAGTGACAATTCCTTGAATGGGTCCATACCCGAAAGTTTGGGAAAACTCACTCAGCTGGTTAGCCTTAATCTGTTTAATAATTTATGGGAAGACAGTTTAACGGAAGCCCATCTCATAAATCTCACAAGATTAAAGTCTTTTAGTGTAAGCACTGATCGACTTGTGCCCATCATTTTCAATTTGACTGATTATGAATGGGTTCCTCCTTTCAAGCTCTGTGATATTTACATGGACAATTGCCGAGTAGGTGCTGGCTTCCCTCTATGGCTTCAATCTCAAACTGAGCTCGTTCATGTCTTACTTACGAATGCTGGAATCTCGGGTCCAATACCAGAGGAATGGCTCTTTAAGATATCTTCCCAAATCGAATTTTTGGATTTATCTTACAATCAAATAAGTGGAAAGCTTCCGTTCCGATTCAACTCTTTTCCAATTCTGCATACCATAGATTTGAGCCATAATCAATATTATGACACTATTCCATCATCTATTTGTAGCATTCAATCTCTATATTACCTTGCTCTGAATAACAACCAGTTATCCGGAGAATTCCCTAAAGAATGGAGTTTGTGGAGCGGCATATACACTCTGGATGTCTCAAACAACAATATGTCTGGTAATATTCCAAGCTCAATGGGCATTCCAAGTTCTCTTTATATACTGAAGACAGACAACAATCAATTTAGCGGAGAAATTCCTTCTGCCTTGCAAAATTGCTCTGGTTTGGAGAGACTTTATCTTGGAGGCAACAAATTTACTGGAAGCATACCTTCTTGGATAGGATCAAAAGTGGACACATTCGCAATCCTAGACCTTAGTCACAACAGATTTTCAGGGACTATTCCCAAGTGTTTGAATAATTTGACTTCCTTAGCCTATCGTAATTATAGTGGCTGGAGCGGCGGTAGTGAGTCTGAGGTAACAACTGTGACTATAAAAGGAAGAGCAAGTGAATACTTCTTATCCAATGCAGAACTTCTAACCATTATTGATTTTTCAAGTAATGATTTAGAAGGTGAAATTCCTGAAGAAATCAACAGTCTTGTTGGATTAGGCACATTAAACCTGTCCATAAATCAATTAAGTGGAAATATCCCCTCAAAAATTGGAAACTTGAAGTTGCTCGAAACACTTGACCTCTCTCAGAACCAACTTTCAGGACAGATTCCAAAAAGTCTCGCTTCTCTGACCTTCTTATCTCACTTGAACTTGTCACGCAACAACTTGACCGGAAGAATTCCTTCAGGCAACCAACTTCAGACGCTCGATGATTCATCTATTTATGAGGGCAATCCTTCACTCTGTGGATTTCCTCTTTCAAAATGCCCAGAAGACGGAGACAAGATGCATGAGCTGTAA

Protein Analysis

793

Amino Acids

88.23

Weight (kDa)

5.13

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 19 - 56 6.7e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 85 - 189 4.2e-07 Leucine-rich repeat region
LRR_14 PF23598 145 - 287 8.9e-07 Leucine-rich repeat region
LRR_14 PF23598 249 - 435 1.3e-09 Leucine-rich repeat region
LRR_8 PF13855 311 - 368 8.5e-07 Leucine rich repeat
LRR_14 PF23598 662 - 766 1.4e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 239
AccBSI CCGCTC 2 cut(s) 1599, 1923
AccIII TCCGGA 1 cut(s) 1565
AciI CCGC 5 cut(s) 246, 1599, 1710, 1923, 1926
AclWI GGATC 2 cut(s) 95, 1813
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 4 cut(s) 1706, 2070, 2250, 2264
AdeI CACNNNGTG 2 cut(s) 1025, 2327
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 1041, 2357
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 1311
Alw26I GTCTC 5 cut(s) 58, 1624, 1747, 2204, 2355
AlwI GGATC 2 cut(s) 95, 1813
Ama87I CYCGRG 1 cut(s) 1342
Aor13HI TCCGGA 1 cut(s) 1565
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 33, 501, 604
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 2 cut(s) 1221, 2263
AspS9I GGNCC 5 cut(s) 240, 493, 634, 1044, 1346
AsuHPI GGTGA 1 cut(s) 2051
AvaI CYCGRG 1 cut(s) 1342
AvaII GGWCC 5 cut(s) 240, 493, 634, 1044, 1346
BaeGI GKGCMC 1 cut(s) 1191
BalI TGGCCA 1 cut(s) 309
BanII GRGCYC 1 cut(s) 1311
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 4 cut(s) 558, 1119, 1694, 2361
Bbv12I GWGCWC 1 cut(s) 1311
BbvI GCAGC 3 cut(s) 45, 513, 591
BccI CCATC 6 cut(s) 141, 379, 875, 1140, 1199, 1513
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 5 cut(s) 58, 1624, 1747, 2204, 2355
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 6 cut(s) 696, 773, 944, 954, 981, 1832
BfuAI ACCTGC 1 cut(s) 239
BglII AGATCT 2 cut(s) 91, 859
BisI GCNGC 5 cut(s) 34, 502, 605, 1600, 1924
BlsI GCNGC 5 cut(s) 35, 503, 606, 1601, 1925
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 5 cut(s) 240, 493, 634, 1044, 1346
BmeT110I CYCGRG 1 cut(s) 1342
BmgT120I GGNCC 5 cut(s) 240, 493, 634, 1044, 1346
BmiI GGNNCC 3 cut(s) 1045, 1224, 1347
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 3 cut(s) 20, 978, 2358
BoxI GACNNNNGTC 1 cut(s) 1839
BpiI GAAGAC 4 cut(s) 558, 1119, 1694, 2361
BpmI CTGGAG 1 cut(s) 1939
Bpu10I CCTNAGC 2 cut(s) 497, 1894
BpuEI CTTGAG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 1565, 2252
BsaXI ACNNNNNCTCC 2 cut(s) 1912, 1942
Bsc4I CCNNNNNNNGG 2 cut(s) 1041, 2357
Bse1I ACTGG 3 cut(s) 181, 1558, 1786
BseAI TCCGGA 1 cut(s) 1565
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 687, 1621
BseLI CCNNNNNNNGG 2 cut(s) 1041, 2357
BseMII CTCAG 6 cut(s) 424, 1036, 1088, 1296, 1929, 2180
BseNI ACTGG 3 cut(s) 181, 1558, 1786
BseSI GKGCMC 1 cut(s) 1191
BseXI GCAGC 3 cut(s) 45, 513, 591
BsgI GTGCAG 1 cut(s) 157
BshFI GGCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 1311
BsiHKCI CYCGRG 1 cut(s) 1342
BsiSI CCGG 2 cut(s) 1566, 2253
BslFI GGGAC 1 cut(s) 1873
BslI CCNNNNNNNGG 2 cut(s) 1041, 2357
BsmAI GTCTC 5 cut(s) 58, 1624, 1747, 2204, 2355
BsmFI GGGAC 1 cut(s) 1873
BsmI GAATGC 3 cut(s) 1336, 1521, 1662
BsnI GGCC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 1342
Bsp1286I GDGCHC 2 cut(s) 1191, 1311
Bsp13I TCCGGA 1 cut(s) 1565
Bsp143I GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
BspACI CCGC 5 cut(s) 246, 1599, 1710, 1923, 1926
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 6 cut(s) 423, 1035, 1087, 1297, 1930, 2179
BspEI TCCGGA 1 cut(s) 1565
BspLI GGNNCC 3 cut(s) 1045, 1224, 1347
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 2 cut(s) 95, 1813
BspQI GCTCTTC 1 cut(s) 1960
BsrBI CCGCTC 2 cut(s) 1599, 1923
BsrI ACTGG 3 cut(s) 181, 1558, 1786
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 1118, 1951, 2063
Bst6I CTCTTC 4 cut(s) 54, 466, 888, 1960
BstAPI GCANNNNNTGC 2 cut(s) 162, 171
BstC8I GCNNGC 4 cut(s) 311, 845, 1007, 1276
BstF5I GGATG 2 cut(s) 687, 1621
BstKTI GATC 7 cut(s) 94, 103, 235, 715, 862, 1180, 1808
BstMAI GTCTC 5 cut(s) 58, 1624, 1747, 2204, 2355
BstMBI GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
BstMWI GCNNNNNNNGC 4 cut(s) 162, 171, 1659, 1923
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 538
BstPAI GACNNNNGTC 1 cut(s) 1839
BstSCI CCNGG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 1191
BstV1I GCAGC 3 cut(s) 45, 513, 591
BstV2I GAAGAC 4 cut(s) 558, 1119, 1694, 2361
BstX2I RGATCY 2 cut(s) 91, 859
BstXI CCANNNNNNTGG 2 cut(s) 581, 1362
BstYI RGATCY 2 cut(s) 91, 859
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 687, 1621
BtsIMutI CAGTG 4 cut(s) 96, 174, 1030, 1173
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 4 cut(s) 311, 845, 1007, 1276
Cfr13I GGNCC 5 cut(s) 240, 493, 634, 1044, 1346
CseI GACGC 1 cut(s) 2293
Csp6I GTAC 1 cut(s) 472
CviQI GTAC 1 cut(s) 472
DpnI GATC 7 cut(s) 93, 102, 234, 714, 861, 1179, 1807
DpnII GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 2 cut(s) 1025, 2327
DrdI GACNNNNNNGTC 1 cut(s) 807
DseDI GACNNNNNNGTC 1 cut(s) 807
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 4 cut(s) 54, 466, 888, 1960
EarI CTCTTC 4 cut(s) 54, 466, 888, 1960
Ecl136II GAGCTC 1 cut(s) 1309
Eco24I GRGCYC 1 cut(s) 1311
Eco32I GATATC 1 cut(s) 1377
Eco47I GGWCC 5 cut(s) 240, 493, 634, 1044, 1346
Eco53kI GAGCTC 1 cut(s) 1309
Eco57I CTGAAG 4 cut(s) 1706, 2070, 2250, 2264
Eco88I CYCGRG 1 cut(s) 1342
EcoICRI GAGCTC 1 cut(s) 1309
EcoRI GAATTC 2 cut(s) 1571, 2259
EcoRII CCWGG 1 cut(s) 122
EcoRV GATATC 1 cut(s) 1377
EcoT22I ATGCAT 2 cut(s) 53, 2373
EcoT38I GRGCYC 1 cut(s) 1311
FalI AAGNNNNNCTT 6 cut(s) 1777, 1809, 2188, 2220, 2248, 2280
FaqI GGGAC 1 cut(s) 1873
Fnu4HI GCNGC 5 cut(s) 34, 502, 605, 1600, 1924
FokI GGATG 2 cut(s) 694, 1628
FriOI GRGCYC 1 cut(s) 1311
Fsp4HI GCNGC 5 cut(s) 34, 502, 605, 1600, 1924
FspBI CTAG 6 cut(s) 696, 773, 944, 954, 981, 1832
GluI GCNGC 5 cut(s) 34, 502, 605, 1600, 1924
GsuI CTGGAG 1 cut(s) 1939
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 1566, 2253
HgaI GACGC 1 cut(s) 2293
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 1427
HinfI GANTC 9 cut(s) 286, 364, 801, 938, 1338, 1440, 1934, 2188, 2294
HpaII CCGG 2 cut(s) 1566, 2253
HphI GGTGA 1 cut(s) 2051
Hpy166II GTNNAC 4 cut(s) 240, 493, 532, 1816
Hpy188I TCNGA 7 cut(s) 203, 1439, 1548, 1939, 2169, 2211, 2283
Hpy188III TCNNGA 7 cut(s) 404, 746, 773, 1566, 1613, 2048, 2181
Hpy8I GTNNAC 4 cut(s) 240, 493, 532, 1816
HpyAV CCTTC 8 cut(s) 435, 552, 1731, 1803, 2030, 2224, 2274, 2328
HpyCH4III ACNGT 3 cut(s) 1118, 1951, 2063
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 171, 1659, 1923
Kpn2I TCCGGA 1 cut(s) 1565
Kzo9I GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
LguI GCTCTTC 1 cut(s) 1960
LmnI GCTCC 2 cut(s) 1596, 1920
Lsp1109I GCAGC 3 cut(s) 45, 513, 591
LweI GCATC 3 cut(s) 20, 978, 2358
MaeI CTAG 6 cut(s) 696, 773, 944, 954, 981, 1832
MaeIII GTNAC 8 cut(s) 251, 380, 939, 1025, 1841, 1942, 1951, 2235
MalI GATC 7 cut(s) 93, 102, 234, 714, 861, 1179, 1807
MbiI CCGCTC 2 cut(s) 1599, 1923
MboI GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
MfeI CAATTG 1 cut(s) 1258
MflI RGATCY 2 cut(s) 91, 859
MhlI GDGCHC 2 cut(s) 1191, 1311
MlsI TGGCCA 1 cut(s) 309
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 3 cut(s) 795, 947, 1943
MmeI TCCRAC 1 cut(s) 2050
Mox20I TGGCCA 1 cut(s) 309
Mph1103I ATGCAT 2 cut(s) 53, 2373
MroI TCCGGA 1 cut(s) 1565
MroXI GAANNNNTTC 2 cut(s) 1221, 2263
MscI TGGCCA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 1078
MspI CCGG 2 cut(s) 1566, 2253
MspR9I CCNGG 1 cut(s) 124
MunI CAATTG 1 cut(s) 1258
Mva1269I GAATGC 3 cut(s) 1336, 1521, 1662
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 4 cut(s) 162, 171, 1659, 1923
NdeII GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
NlaIV GGNNCC 3 cut(s) 1045, 1224, 1347
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 5 cut(s) 939, 1025, 1841, 1951, 2235
NsiI ATGCAT 2 cut(s) 53, 2373
NspI RCATGY 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 1960
PctI GAATGC 3 cut(s) 1336, 1521, 1662
PdmI GAANNNNTTC 2 cut(s) 1221, 2263
PfeI GAWTC 6 cut(s) 286, 364, 1338, 1440, 2188, 2294
PkrI GCNGC 5 cut(s) 35, 503, 606, 1601, 1925
PleI GAGTC 3 cut(s) 795, 946, 1942
PpsI GAGTC 3 cut(s) 795, 946, 1942
PshAI GACNNNNGTC 1 cut(s) 1839
PshBI ATTAAT 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 1311
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 1045, 1224, 1347
PspPI GGNCC 5 cut(s) 240, 493, 634, 1044, 1346
PsuI RGATCY 2 cut(s) 91, 859
PvuII CAGCTG 1 cut(s) 1078
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 16
SacI GAGCTC 1 cut(s) 1311
SapI GCTCTTC 1 cut(s) 1960
SatI GCNGC 5 cut(s) 34, 502, 605, 1600, 1924
Sau3AI GATC 7 cut(s) 91, 100, 232, 712, 859, 1177, 1805
Sau96I GGNCC 5 cut(s) 240, 493, 634, 1044, 1346
SchI GAGTC 3 cut(s) 795, 947, 1943
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 1191, 1311
SfaNI GCATC 3 cut(s) 20, 978, 2358
SinI GGWCC 5 cut(s) 240, 493, 634, 1044, 1346
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 695
SsiI CCGC 5 cut(s) 246, 1599, 1710, 1923, 1926
SspI AATATT 2 cut(s) 1490, 1645
SspMI CTAG 6 cut(s) 696, 773, 944, 954, 981, 1832
SstI GAGCTC 1 cut(s) 1311
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 1118, 1951, 2063
TaqI TCGA 7 cut(s) 145, 639, 791, 1180, 1389, 2148, 2289
TauI GCSGC 2 cut(s) 1602, 1926
TfiI GAWTC 6 cut(s) 286, 364, 1338, 1440, 2188, 2294
TscAI CASTG 4 cut(s) 103, 181, 1030, 1180
TseFI GTSAC 5 cut(s) 939, 1025, 1841, 1951, 2235
TseI GCWGC 3 cut(s) 33, 501, 604
Tsp45I GTSAC 5 cut(s) 939, 1025, 1841, 1951, 2235
TspDTI ATGAA 9 cut(s) 150, 292, 339, 721, 765, 912, 1230, 1304, 2286
TspGWI ACGGA 4 cut(s) 93, 1139, 1422, 2373
TspRI CASTG 4 cut(s) 103, 181, 1030, 1180
VpaK11BI GGWCC 5 cut(s) 240, 493, 634, 1044, 1346
VspI ATTAAT 1 cut(s) 660
XbaI TCTAGA 1 cut(s) 772
XceI RCATGY 1 cut(s) 538
XmnI GAANNNNTTC 2 cut(s) 1221, 2263
XspI CTAG 6 cut(s) 696, 773, 944, 954, 981, 1832
Zsp2I ATGCAT 2 cut(s) 53, 2373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.