Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Reverse (-)

72066751 .. 72068232

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATGCAATATGCAACATCAGCCCGAGACGCTCAATCAAAAACCTCTTTCTTTCTTTCTCTTCTATTCTCAACCCTCACCATTTCTTCCGTCAACTCTCAAAGTCTCTGAACCAAAAACCCTCCACAAATGAATCACCCAACTCCCCCAAATCAGAATCCCCAACCCTAACTCTCCCCGCCACCACTCCTCCCCCTCCGGCCCCACCCCTACCCCCACTGCAAGCTCGGCGTTGCCGTCGACCTCTTCGACGAGAGCGCCTACTCCGTCCCCTAGGTCATCGATTACTACATCCACCCCGGCATGATTTCAATGCCTCCACCACCGCCAGGGCTGGCGATCTCCTTCGCCCTTTGAAGGAGGGTCAGATTTCCTACAAGATCCACATCATCAAGGACCACGATATGAAGGAACGGCTCTACCTCGAGGTCGAGAGGTCAGGGCTCAGTGCCGTCATCATGGGAAGCCGAGGCTTTGGGACGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

164

Amino Acids

18.52

Weight (kDa)

10.86

Isoelectric Point (pI)

70.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	241
AciI	CCGC	2 cut(s)	180, 327
AclWI	GGATC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	330, 358
AgsI	TTSAA	2 cut(s)	313, 358
AjiI	CACGTC	1 cut(s)	483
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	22, 111
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	2 cut(s)	25, 425
AoxI	GGCC	1 cut(s)	201
AspA2I	CCTAGG	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	202, 397
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	71, 129
AvaI	CYCGRG	2 cut(s)	25, 425
AvaII	GGWCC	1 cut(s)	397
AvrII	CCTAGG	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	447
BceAI	ACGGC	3 cut(s)	222, 431, 437
BciT130I	CCWGG	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	22, 111
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	262
BlnI	CCTAGG	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	301, 331
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	2 cut(s)	25, 425
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	202, 397
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	2 cut(s)	301, 331
BpuMI	CCSGG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	274, 299, 330, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 358
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	283
BseDI	CCNNGG	4 cut(s)	274, 299, 330, 469
BseGI	GGATG	2 cut(s)	10, 292
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	2 cut(s)	330, 358
BseMII	CTCAG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	283
BsiHKCI	CYCGRG	2 cut(s)	25, 425
BsiSI	CCGG	2 cut(s)	200, 301
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	330, 358
BsmAI	GTCTC	2 cut(s)	22, 111
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	2 cut(s)	25, 425
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	340, 381
BspACI	CCGC	2 cut(s)	180, 327
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	459
BspDI	ATCGAT	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	274, 299, 330, 469
BssMI	GATC	2 cut(s)	340, 381
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	331
Bst6I	CTCTTC	2 cut(s)	67, 252
BstC8I	GCNNGC	2 cut(s)	225, 337
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	10, 292
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	343, 384
BstMAI	GTCTC	2 cut(s)	22, 111
BstMBI	GATC	2 cut(s)	340, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 30, 229
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	299, 329
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	10, 292
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	218, 454
Cac8I	GCNNGC	2 cut(s)	225, 337
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	202, 397
ClaI	ATCGAT	1 cut(s)	283
CseI	GACGC	1 cut(s)	39
CviAII	CATG	2 cut(s)	305, 460
CviJI	RGCY	8 cut(s)	24, 203, 227, 335, 418, 445, 468, 474
CviKI_1	RGCY	8 cut(s)	24, 203, 227, 335, 418, 445, 468, 474
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	342, 383
DpnII	GATC	2 cut(s)	340, 381
Eam1104I	CTCTTC	2 cut(s)	67, 252
EarI	CTCTTC	2 cut(s)	67, 252
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	25, 425
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	308, 463
FaiI	YATR	4 cut(s)	13, 306, 407, 461
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	304, 459
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	241
FokI	GGATG	2 cut(s)	17, 279
FriOI	GRGCYC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	200, 301
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	308, 463
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	2 cut(s)	95, 242
HindII	GTYRAC	2 cut(s)	95, 242
HinfI	GANTC	2 cut(s)	134, 158
HpaII	CCGG	2 cut(s)	200, 301
HphI	GGTGA	2 cut(s)	71, 129
Hpy166II	GTNNAC	2 cut(s)	95, 242
Hpy188I	TCNGA	3 cut(s)	111, 157, 369
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	2 cut(s)	95, 242
Hpy99I	CGWCG	2 cut(s)	243, 255
HpyAV	CCTTC	3 cut(s)	352, 356, 403
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	3 cut(s)	8, 15, 223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 30, 229
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	2 cut(s)	308, 463
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	340, 381
LpnPI	CCDG	6 cut(s)	213, 314, 316, 321, 343, 426
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	482
MalI	GATC	2 cut(s)	342, 383
MboI	GATC	2 cut(s)	340, 381
MboII	GAAGA	3 cut(s)	54, 79, 239
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	447
MspI	CCGG	2 cut(s)	200, 301
MspR9I	CCNGG	2 cut(s)	301, 331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	21, 30, 229
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	2 cut(s)	340, 381
NlaIII	CATG	2 cut(s)	308, 463
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	235, 247
PfeI	GAWTC	2 cut(s)	134, 158
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	202, 397
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	340, 381
Sau96I	GGNCC	2 cut(s)	202, 397
ScrFI	CCNGG	2 cut(s)	301, 331
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	8 cut(s)	48, 229, 247, 280, 426, 432, 440, 485
Sfr274I	CTCGAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SsiI	CCGC	2 cut(s)	180, 327
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	299, 329
StyI	CCWWGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	5 cut(s)	241, 250, 283, 426, 432
TfiI	GAWTC	2 cut(s)	134, 158
TscAI	CASTG	2 cut(s)	225, 454
TspDTI	ATGAA	2 cut(s)	147, 422
TspGWI	ACGGA	2 cut(s)	80, 257
TspRI	CASTG	2 cut(s)	225, 454
VpaK11BI	GGWCC	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	425
XmaJI	CCTAGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.