Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Forward (+)

14220515 .. 14223607

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21220.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATCACCCACAACCCCAAGACCACGCCGACCCCCAGCTCCCCCAAATCAGAATCCACCACCCCAACTCCCCCCGCCACCACTCCTCCCCTGCCGGCGCCACCCCCACCCCCACCGCCGGCGCCCGCCGCAAGCTCGGCGTCGCCGTCGACCTCTCCGACGAGAGCGCCTACGCCGTCCGCTGGGCCGTCGACCACTACATCCGCCCTGGCGACGCCGTCATCCTCCTCCACGTCAGCCCTACCTCCGTCCTTTTCGGCGCCGACTGGGGCTCCACCGACCTCTCCCTCGCCGCCAACGACGACCTCCTCCTCAACACCTCCTCCCCCAACCACGCCTCCAAGCAGAATCTCGAGCACGATTTCGACGCCTTCACCGCCGCCAAGGCCGGCGATCTCGCCCGCCCCTTGAAGGAGGCTCAGATTCCCTACAAGATCCACATCGTCAAGGACCACGATATGAAGGAGCGGCTCTGCTTGGAGGTCGAGAGGTTAGGGCTCAGCGCGGTCATCATGGGCAGCCGTGGCTTTGGTGCTGTCAAGCGCGGCAGTGATGGTAGGCTTGGCAGTGTCAGCGATTACTGCGTGCATCACTGTGTCTGTCCTGTTGTGGTTGTGCGTTATCCTGAGGATAAGGATGATGACAATGCCGCCGGAGCTAGCGCCGCTCCTGCTGCTGTGGTTGCTGTTAAGGAGGATGAGGAGGAAGAGGCTGTAATCAAGCCTGTCCCTGCCGAGAAACCGCATCTTAAAGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

254

Amino Acids

27.23

Weight (kDa)

5.79

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	44 - 207	1.2e-23	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	98, 122, 260
AccBSI	CCGCTC	2 cut(s)	469, 668
AccI	GTMKAC	2 cut(s)	150, 192
AccII	CGCG	2 cut(s)	506, 546
AclWI	GGATC	1 cut(s)	430
AcyI	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
AfiI	CCNNNNNNNGG	3 cut(s)	119, 183, 412
AgsI	TTSAA	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	40, 136, 659
AluI	AGCT	3 cut(s)	40, 136, 659
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	186, 387
ApeKI	GCWGC	2 cut(s)	519, 674
AspLEI	GCGC	7 cut(s)	101, 125, 170, 263, 506, 546, 665
AspS9I	GGNCC	2 cut(s)	186, 451
AsuHPI	GGTGA	1 cut(s)	367
AsuNHI	GCTAGC	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	627
BanI	GGYRCC	3 cut(s)	98, 122, 260
BanII	GRGCYC	2 cut(s)	275, 501
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	531, 661
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	5 cut(s)	131, 161, 173, 203, 507
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	1 cut(s)	660
BfoI	RGCGCY	5 cut(s)	102, 126, 171, 264, 666
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	9 cut(s)	130, 294, 381, 470, 520, 547, 651, 666, 675
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	9 cut(s)	131, 295, 382, 471, 521, 548, 652, 667, 676
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	186, 451
BmiI	GGNNCC	4 cut(s)	100, 124, 262, 274
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	598, 745, 754
BmtI	GCTAGC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
BsaJI	CCNNGG	3 cut(s)	208, 384, 523
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 183, 412
Bse118I	RCCGGY	3 cut(s)	95, 119, 389
Bse1I	ACTGG	1 cut(s)	272
Bse21I	CCTNAGG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	208, 384, 523
BseGI	GGATG	4 cut(s)	201, 222, 643, 703
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	119, 183, 412
BseMII	CTCAG	3 cut(s)	434, 514, 618
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	6 cut(s)	76, 218, 299, 302, 313, 716
BseXI	GCAGC	2 cut(s)	531, 661
BseYI	CCCAGC	2 cut(s)	36, 183
Bsh1236I	CGCG	2 cut(s)	506, 546
BshFI	GGCC	2 cut(s)	188, 389
BshNI	GGYRCC	3 cut(s)	98, 122, 260
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	96, 120, 390, 654
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	119, 183, 412
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	188, 389
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	275, 360, 501
Bsp143I	GATC	2 cut(s)	394, 435
Bsp1720I	GCTNAGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	188, 389
BspCNI	CTCAG	3 cut(s)	433, 513, 619
BspFNI	CGCG	2 cut(s)	506, 546
BspLI	GGNNCC	4 cut(s)	100, 124, 262, 274
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	3 cut(s)	98, 122, 260
BsrBI	CCGCTC	2 cut(s)	469, 668
BsrFI	RCCGGY	3 cut(s)	95, 119, 389
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	3 cut(s)	95, 119, 389
BssECI	CCNNGG	3 cut(s)	208, 384, 523
BssMI	GATC	2 cut(s)	394, 435
BssNI	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	702
BstACI	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
BstC8I	GCNNGC	8 cut(s)	97, 121, 127, 134, 391, 403, 587, 661
BstDEI	CTNAG	4 cut(s)	420, 500, 627, 759
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	4 cut(s)	201, 222, 643, 703
BstFNI	CGCG	2 cut(s)	506, 546
BstH2I	RGCGCY	5 cut(s)	102, 126, 171, 264, 666
BstHHI	GCGC	7 cut(s)	101, 125, 170, 263, 506, 546, 665
BstKTI	GATC	2 cut(s)	397, 438
BstMBI	GATC	2 cut(s)	394, 435
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	2 cut(s)	506, 546
BstV1I	GCAGC	2 cut(s)	531, 661
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	188, 389
BtgI	CCRYGG	1 cut(s)	523
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	4 cut(s)	201, 222, 643, 703
BtsI	GCAGTG	2 cut(s)	556, 574
BtsIMutI	CAGTG	3 cut(s)	556, 574, 592
Cac8I	GCNNGC	8 cut(s)	97, 121, 127, 134, 391, 403, 587, 661
CfoI	GCGC	7 cut(s)	101, 125, 170, 263, 506, 546, 665
Cfr10I	RCCGGY	3 cut(s)	95, 119, 389
Cfr13I	GGNCC	2 cut(s)	186, 451
CseI	GACGC	3 cut(s)	130, 224, 377
CviAII	CATG	1 cut(s)	514
DdeI	CTNAG	4 cut(s)	420, 500, 627, 759
DinI	GGCGCC	3 cut(s)	100, 124, 262
DpnI	GATC	2 cut(s)	396, 437
DpnII	GATC	2 cut(s)	394, 435
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	275, 501
Eco47I	GGWCC	1 cut(s)	451
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	2 cut(s)	275, 501
EgeI	GGCGCC	3 cut(s)	100, 124, 262
EheI	GGCGCC	3 cut(s)	100, 124, 262
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	517
FaiI	YATR	2 cut(s)	461, 515
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	1 cut(s)	513
FauI	CCCGC	3 cut(s)	83, 134, 410
FblI	GTMKAC	2 cut(s)	150, 192
Fnu4HI	GCNGC	9 cut(s)	130, 294, 381, 470, 520, 547, 651, 666, 675
FokI	GGATG	4 cut(s)	188, 209, 650, 710
FriOI	GRGCYC	2 cut(s)	275, 501
Fsp4HI	GCNGC	9 cut(s)	130, 294, 381, 470, 520, 547, 651, 666, 675
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	7 cut(s)	100, 124, 169, 262, 505, 545, 664
GluI	GCNGC	9 cut(s)	130, 294, 381, 470, 520, 547, 651, 666, 675
GsaI	CCCAGC	2 cut(s)	40, 187
HaeII	RGCGCY	5 cut(s)	102, 126, 171, 264, 666
HaeIII	GGCC	2 cut(s)	188, 389
HapII	CCGG	4 cut(s)	96, 120, 390, 654
HgaI	GACGC	3 cut(s)	130, 224, 377
HhaI	GCGC	7 cut(s)	101, 125, 170, 263, 506, 546, 665
Hin1I	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	7 cut(s)	99, 123, 168, 261, 504, 544, 663
HinP1I	GCGC	7 cut(s)	99, 123, 168, 261, 504, 544, 663
HincII	GTYRAC	2 cut(s)	151, 193
HindII	GTYRAC	2 cut(s)	151, 193
HinfI	GANTC	4 cut(s)	4, 54, 349, 424
HpaII	CCGG	4 cut(s)	96, 120, 390, 654
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	151, 193
Hpy188I	TCNGA	3 cut(s)	53, 160, 423
Hpy188III	TCNNGA	3 cut(s)	353, 487, 626
Hpy8I	GTNNAC	2 cut(s)	151, 193
Hpy99I	CGWCG	7 cut(s)	146, 152, 164, 194, 218, 305, 371
HpyAV	CCTTC	3 cut(s)	382, 406, 457
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	589
HpyF3I	CTNAG	4 cut(s)	420, 500, 627, 759
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	6 cut(s)	99, 123, 141, 216, 261, 369
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	7 cut(s)	99, 123, 168, 261, 504, 544, 663
KasI	GGCGCC	3 cut(s)	98, 122, 260
KroI	GCCGGC	3 cut(s)	95, 119, 389
KroNI	GCCGGC	3 cut(s)	97, 121, 391
Kzo9I	GATC	2 cut(s)	394, 435
LmnI	GCTCC	5 cut(s)	45, 278, 466, 656, 673
Lsp1109I	GCAGC	2 cut(s)	531, 661
LweI	GCATC	3 cut(s)	598, 745, 754
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	234
MalI	GATC	2 cut(s)	396, 437
MbiI	CCGCTC	2 cut(s)	469, 668
MboI	GATC	2 cut(s)	394, 435
MboII	GAAGA	1 cut(s)	719
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	3 cut(s)	275, 360, 501
Mly113I	GGCGCC	3 cut(s)	99, 123, 261
MmeI	TCCRAC	1 cut(s)	183
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	3 cut(s)	95, 119, 389
MseI	TTAA	2 cut(s)	690, 750
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	4 cut(s)	96, 120, 390, 654
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	506, 546
NaeI	GCCGGC	3 cut(s)	97, 121, 391
NarI	GGCGCC	3 cut(s)	99, 123, 261
NdeII	GATC	2 cut(s)	394, 435
NgoMIV	GCCGGC	3 cut(s)	95, 119, 389
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	4 cut(s)	100, 124, 262, 274
NmeAIII	GCCGAG	2 cut(s)	117, 760
PaeR7I	CTCGAG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 156, 297
PdiI	GCCGGC	3 cut(s)	97, 121, 391
PfeI	GAWTC	4 cut(s)	4, 54, 349, 424
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	9 cut(s)	131, 295, 382, 471, 521, 548, 652, 667, 676
PluTI	GGCGCC	3 cut(s)	102, 126, 264
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	36, 183
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	100, 124, 262, 274
PspPI	GGNCC	2 cut(s)	186, 451
PsuI	RGATCY	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	594
SalI	GTCGAC	2 cut(s)	149, 191
SaqAI	TTAA	2 cut(s)	690, 750
SatI	GCNGC	9 cut(s)	130, 294, 381, 470, 520, 547, 651, 666, 675
Sau3AI	GATC	2 cut(s)	394, 435
Sau96I	GGNCC	2 cut(s)	186, 451
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	3 cut(s)	275, 360, 501
SfaNI	GCATC	3 cut(s)	598, 745, 754
SfoI	GGCGCC	3 cut(s)	100, 124, 262
Sfr274I	CTCGAG	1 cut(s)	353
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SspDI	GGCGCC	3 cut(s)	98, 122, 260
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	596
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	5 cut(s)	150, 192, 354, 366, 486
TauI	GCSGC	7 cut(s)	132, 296, 383, 472, 549, 653, 668
TfiI	GAWTC	4 cut(s)	4, 54, 349, 424
Tru1I	TTAA	2 cut(s)	690, 750
Tru9I	TTAA	2 cut(s)	690, 750
TscAI	CASTG	3 cut(s)	556, 574, 599
TseI	GCWGC	2 cut(s)	519, 674
TspDTI	ATGAA	2 cut(s)	17, 476
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	556, 574, 599
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	150, 192
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.