RchiOBHm_Chr5g0036291

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006464
Physical Location & Seq
Forward (+)
30471463 .. 30474985
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31511

Sequence Viewer

Length: 762 bp
ATGAATCACCCACAACCCCAAGACCCCGCCGACCCCCAACTCCCCCAAATCAGAATCCACCACCCCAACTCTCCCCGCCACCACTCCTCCCCCGCCGGCGCCACCCCCACCCCCACCGCCGGCGCCCGCCGCAAGCTCGGCGTCGCCGTCGACCTCTCCGACGAGAGCGCCTACGCCGTCCGCTGGGCGGTCGATCACTACATCCGCCCCGGCGACGCCGTCATCCTCCTCCACGTCAGCCCTACCTCCGTACTCTTCGGCGCCGATTGGGGCTCCACCGACCTCTCCCTCGCCGCCAACGACGAGCTTGTCGACCCCTCCCACGACGTCCACAACCACCACTCCAAGCAGAACCTCGAGCACGATTTCGATGCCTTCACCGCCGCCAAGGCCGGCGATCTCGCTCGCCCCTTGAAGGAGGCTCAGATTCCCTACAAGATCCACATCGTCAAGGACCACGATATGAAGGAGCGGCTGTGCCTGGAGGTCGAGAGGTTAGGGCTCAGTGCGGTCATCATGGGGAGCCGAGGCTTCGGGGCGGTGAAGCGTGGCAGTGATGGTAGGCTTGGCAGTGTGAGCGATTATTGTGTGCATCACTGTGTTTGTCCTGTTGTAGTTGTACGCTATCCTGAGGATAAGGATGATGACAATGGTGGCGGAGCTCCTGCCGCTGCGGCTGTGGTTGCCGTTAAGGAGGATGAGGAGGAAGAGGCTGTGATTAAGCCCATCCCCGCCGAGAAAGAGCATCTTAAAGATGCTTAG

Protein Analysis

253

Amino Acids

27.37

Weight (kDa)

5.65

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 44 - 208 5e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AatII GACGTC 1 cut(s) 330
AccB1I GGYRCC 3 cut(s) 98, 122, 260
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 2 cut(s) 150, 312
AclWI GGATC 1 cut(s) 433
AcyI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
AfaI GTAC 2 cut(s) 252, 621
AfiI CCNNNNNNNGG 4 cut(s) 119, 183, 187, 415
AgsI TTSAA 1 cut(s) 415
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 3 cut(s) 136, 307, 662
AluI AGCT 3 cut(s) 136, 307, 662
Alw21I GWGCWC 2 cut(s) 363, 664
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 671
AspLEI GCGC 4 cut(s) 101, 125, 170, 263
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 370, 553
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 454
AxyI CCTNAGG 1 cut(s) 630
BanI GGYRCC 3 cut(s) 98, 122, 260
BanII GRGCYC 3 cut(s) 275, 504, 664
Bbv12I GWGCWC 2 cut(s) 363, 664
BbvI GCAGC 1 cut(s) 658
BccI CCATC 2 cut(s) 551, 734
BceAI ACGGC 4 cut(s) 131, 161, 203, 671
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 482
BcnI CCSGG 1 cut(s) 210
BfoI RGCGCY 4 cut(s) 102, 126, 171, 264
BglI GCCNNNNNGGC 2 cut(s) 389, 674
BisI GCNGC 7 cut(s) 130, 294, 384, 473, 669, 672, 675
BlsI GCNGC 7 cut(s) 131, 295, 385, 474, 670, 673, 676
Bme1390I CCNGG 2 cut(s) 210, 482
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 5 cut(s) 100, 124, 262, 274, 524
BmrFI CCNGG 2 cut(s) 210, 482
BmsI GCATC 4 cut(s) 361, 601, 745, 754
BpmI CTGGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BsaJI CCNNGG 3 cut(s) 208, 387, 526
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 326, 356, 461, 491
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 183, 187, 415
Bse118I RCCGGY 3 cut(s) 95, 119, 392
Bse21I CCTNAGG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 208, 387, 526
BseGI GGATG 5 cut(s) 201, 222, 646, 703, 726
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 4 cut(s) 119, 183, 187, 415
BseMII CTCAG 3 cut(s) 437, 517, 621
BseRI GAGGAG 3 cut(s) 76, 218, 716
BseXI GCAGC 1 cut(s) 658
BseYI CCCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 392
BshNI GGYRCC 3 cut(s) 98, 122, 260
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 363, 664
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 96, 120, 210, 393
BslI CCNNNNNNNGG 4 cut(s) 119, 183, 187, 415
BsnI GGCC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 4 cut(s) 275, 363, 504, 664
Bsp143I GATC 3 cut(s) 193, 397, 438
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 3 cut(s) 436, 516, 622
BspLI GGNNCC 5 cut(s) 100, 124, 262, 274, 524
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 3 cut(s) 98, 122, 260
BsrBI CCGCTC 1 cut(s) 472
BsrFI RCCGGY 3 cut(s) 95, 119, 392
BssAI RCCGGY 3 cut(s) 95, 119, 392
BssECI CCNNGG 3 cut(s) 208, 387, 526
BssMI GATC 3 cut(s) 193, 397, 438
BssNI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 2 cut(s) 260, 702
BstACI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BstC8I GCNNGC 6 cut(s) 97, 121, 127, 134, 394, 406
BstDEI CTNAG 4 cut(s) 423, 503, 630, 759
BstF5I GGATG 5 cut(s) 201, 222, 646, 703, 726
BstH2I RGCGCY 4 cut(s) 102, 126, 171, 264
BstHHI GCGC 4 cut(s) 101, 125, 170, 263
BstKTI GATC 3 cut(s) 196, 400, 441
BstMBI GATC 3 cut(s) 193, 397, 438
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 8 cut(s) 129, 138, 380, 389, 576, 668, 674, 683
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 208, 480
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 1 cut(s) 392
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 5 cut(s) 201, 222, 646, 703, 726
BtsI GCAGTG 2 cut(s) 559, 577
BtsIMutI CAGTG 4 cut(s) 511, 559, 577, 595
Cac8I GCNNGC 6 cut(s) 97, 121, 127, 134, 394, 406
CfoI GCGC 4 cut(s) 101, 125, 170, 263
Cfr10I RCCGGY 3 cut(s) 95, 119, 392
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 2 cut(s) 130, 224
Csp6I GTAC 2 cut(s) 251, 620
CviAII CATG 1 cut(s) 517
CviQI GTAC 2 cut(s) 251, 620
DdeI CTNAG 4 cut(s) 423, 503, 630, 759
DinI GGCGCC 3 cut(s) 100, 124, 262
DpnI GATC 3 cut(s) 195, 399, 440
DpnII GATC 3 cut(s) 193, 397, 438
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 260, 702
EarI CTCTTC 2 cut(s) 260, 702
EciI GGCGGA 2 cut(s) 194, 672
Ecl136II GAGCTC 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 3 cut(s) 275, 504, 664
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 3 cut(s) 275, 504, 664
EgeI GGCGCC 3 cut(s) 100, 124, 262
EheI GGCGCC 3 cut(s) 100, 124, 262
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 1 cut(s) 520
FaiI YATR 2 cut(s) 464, 518
FalI AAGNNNNNCTT 1 cut(s) 732
FatI CATG 1 cut(s) 516
FauI CCCGC 5 cut(s) 34, 83, 100, 134, 739
FblI GTMKAC 2 cut(s) 150, 312
Fnu4HI GCNGC 7 cut(s) 130, 294, 384, 473, 669, 672, 675
FokI GGATG 5 cut(s) 188, 209, 653, 710, 713
FriOI GRGCYC 3 cut(s) 275, 504, 664
Fsp4HI GCNGC 7 cut(s) 130, 294, 384, 473, 669, 672, 675
GlaI GCGC 4 cut(s) 100, 124, 169, 262
GluI GCNGC 7 cut(s) 130, 294, 384, 473, 669, 672, 675
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 4 cut(s) 102, 126, 171, 264
HaeIII GGCC 1 cut(s) 392
HapII CCGG 4 cut(s) 96, 120, 210, 393
HgaI GACGC 2 cut(s) 130, 224
HhaI GCGC 4 cut(s) 101, 125, 170, 263
Hin1I GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 4 cut(s) 99, 123, 168, 261
HinP1I GCGC 4 cut(s) 99, 123, 168, 261
HincII GTYRAC 2 cut(s) 151, 313
HindII GTYRAC 2 cut(s) 151, 313
HinfI GANTC 3 cut(s) 4, 54, 427
HpaII CCGG 4 cut(s) 96, 120, 210, 393
HphI GGTGA 2 cut(s) 370, 553
Hpy166II GTNNAC 3 cut(s) 151, 313, 331
Hpy188I TCNGA 3 cut(s) 53, 160, 426
Hpy188III TCNNGA 2 cut(s) 490, 629
Hpy8I GTNNAC 3 cut(s) 151, 313, 331
Hpy99I CGWCG 6 cut(s) 146, 152, 164, 218, 305, 329
HpyAV CCTTC 3 cut(s) 385, 409, 460
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 234, 327
HpyCH4V TGCA 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 8 cut(s) 129, 138, 380, 389, 576, 668, 674, 683
HpyF3I CTNAG 4 cut(s) 423, 503, 630, 759
HpySE526I ACGT 2 cut(s) 234, 327
Hsp92I GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 4 cut(s) 99, 123, 168, 261
KasI GGCGCC 3 cut(s) 98, 122, 260
KroI GCCGGC 3 cut(s) 95, 119, 392
KroNI GCCGGC 3 cut(s) 97, 121, 394
Kzo9I GATC 3 cut(s) 193, 397, 438
LmnI GCTCC 5 cut(s) 278, 469, 522, 659, 667
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 4 cut(s) 361, 601, 745, 754
MaeII ACGT 2 cut(s) 234, 327
MalI GATC 3 cut(s) 195, 399, 440
MbiI CCGCTC 1 cut(s) 472
MboI GATC 3 cut(s) 193, 397, 438
MboII GAAGA 2 cut(s) 247, 719
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 4 cut(s) 275, 363, 504, 664
Mly113I GGCGCC 3 cut(s) 99, 123, 261
MmeI TCCRAC 1 cut(s) 183
MreI CGCCGGCG 2 cut(s) 95, 119
MroNI GCCGGC 3 cut(s) 95, 119, 392
MseI TTAA 3 cut(s) 690, 720, 750
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 2 cut(s) 183, 671
MspI CCGG 4 cut(s) 96, 120, 210, 393
MspR9I CCNGG 2 cut(s) 210, 482
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 8 cut(s) 129, 138, 380, 389, 576, 668, 674, 683
NaeI GCCGGC 3 cut(s) 97, 121, 394
NarI GGCGCC 3 cut(s) 99, 123, 261
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 193, 397, 438
NgoMIV GCCGGC 3 cut(s) 95, 119, 392
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 5 cut(s) 100, 124, 262, 274, 524
NmeAIII GCCGAG 3 cut(s) 117, 551, 760
PaeR7I CTCGAG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 156, 297, 309
PdiI GCCGGC 3 cut(s) 97, 121, 394
PfeI GAWTC 3 cut(s) 4, 54, 427
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 7 cut(s) 131, 295, 385, 474, 670, 673, 676
PluTI GGCGCC 3 cut(s) 102, 126, 264
Psp124BI GAGCTC 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 5 cut(s) 100, 124, 262, 274, 524
PspPI GGNCC 1 cut(s) 454
PspXI VCTCGAGB 1 cut(s) 356
PsuI RGATCY 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 252, 621
RsaNI GTAC 2 cut(s) 251, 620
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 664
SalI GTCGAC 2 cut(s) 149, 311
SaqAI TTAA 3 cut(s) 690, 720, 750
SatI GCNGC 7 cut(s) 130, 294, 384, 473, 669, 672, 675
Sau3AI GATC 3 cut(s) 193, 397, 438
Sau96I GGNCC 1 cut(s) 454
ScrFI CCNGG 2 cut(s) 210, 482
SduI GDGCHC 4 cut(s) 275, 363, 504, 664
SfaNI GCATC 4 cut(s) 361, 601, 745, 754
SfoI GGCGCC 3 cut(s) 100, 124, 262
Sfr274I CTCGAG 1 cut(s) 356
SgrAI CRCCGGYG 2 cut(s) 95, 119
SinI GGWCC 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SspDI GGCGCC 3 cut(s) 98, 122, 260
SstI GAGCTC 1 cut(s) 664
StyD4I CCNGG 2 cut(s) 208, 480
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 237, 330
TaqI TCGA 6 cut(s) 150, 192, 312, 357, 369, 489
TauI GCSGC 6 cut(s) 132, 296, 386, 475, 671, 677
TfiI GAWTC 3 cut(s) 4, 54, 427
Tru1I TTAA 3 cut(s) 690, 720, 750
Tru9I TTAA 3 cut(s) 690, 720, 750
TscAI CASTG 4 cut(s) 511, 559, 577, 602
TseI GCWGC 1 cut(s) 671
TspDTI ATGAA 2 cut(s) 17, 479
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 4 cut(s) 511, 559, 577, 602
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 2 cut(s) 150, 312
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.