Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Reverse (-)

23726163 .. 23730375

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAATCACACGCAGCAGCCTTCCCAGCCCCAAGATCTGTCAGATCCCCAACTCCCCCATATCAGAGTCCACCACCCCAACTCTCCCCGACACCACCCCAACTCCCCTCGTCACCACTCCTCCTCCGCCGCCACTCCCACCCCCACCGCCGGCGCGCGCCGCAAGCTCGGCGTCGCCGTTGACCTCTCTGACGAGAGCGCCCACGCCGTCCGCTGGGCTGTCGACCACTACATCCGCCCCGGCGACGCCGTCATCCTCCTCCACGTCAGCCCCACCTCCGTCCTCTTCGGCGCCGACTGGGGCTCCGTTGACCTCTCCATCAATACCAACGACGACATTGATTTCGTCGACAACCACGCCCTGCACGACTCCGTCAGGCAGAAGAAGCTTGAGAACGACTTCGATGCCTTCACCGCCTCCAAGGCCGCCGATCTTGCCAAGCCCTTGAGGGAGGCGCAGATTCCGTACAAGATCCACATCGTCAAGGACCATGACATGAAGGAGCGGCTCTGCTTGGAGGTCGAGAGGCTAGGGCTCAGTGCCGTGATCATGGGGAGCCGAGGGGTCGGCGCTGCCAAGCGTGGGAACGACGGCAGGCTGGGAAGCGTCAGCGATTATTGTGTACACCACTGTGTTTGTCCCGTTGTTGTTGTCCGGTTTCCGGAGGATGACAATTGCGGCGTTGCTGATGGTGGTTCTGGTGCTCCTTCTGTTGCTGCGGCGGTTGTTTCTATTAAAGAGAATAAGGAGGAAGAGGCCGTGATCAAGCCGGTGCTAAAGGAGGAGCATAAGTCAGTTTCGAAGCTTAGCAGTTTGTGTAGATGTTTGAGTCGACTGGGTGTGGTGTCAAGATACGTTGAGTCCAGACTGCTTGCTCTCCTCACCAACAGCTCTTTCTCATGTATAAACTTTGGGATGATTGGAGATGGTATTTGTACGGTGAATGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

318

Amino Acids

34.37

Weight (kDa)

6.4

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	505
AccI	GTMKAC	3 cut(s)	222, 348, 832
AccII	CGCG	2 cut(s)	155, 157
AccIII	TCCGGA	1 cut(s)	661
AclWI	GGATC	2 cut(s)	38, 466
AcyI	GRCGYC	3 cut(s)	171, 246, 291
AfaI	GTAC	3 cut(s)	467, 624, 937
AfiI	CCNNNNNNNGG	4 cut(s)	149, 213, 582, 661
AjiI	CACGTC	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	4 cut(s)	166, 388, 805, 891
AluI	AGCT	4 cut(s)	166, 388, 805, 891
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	2 cut(s)	38, 466
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	423, 756
ApeKI	GCWGC	4 cut(s)	13, 16, 572, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	7 cut(s)	155, 157, 159, 200, 293, 457, 572
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	4 cut(s)	104, 403, 874, 952
AsuII	TTCGAA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	305, 537
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	25, 28, 559, 703
BccI	CCATC	3 cut(s)	326, 683, 920
BceAI	ACGGC	6 cut(s)	161, 191, 233, 527, 607, 743
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BclI	TGATCA	2 cut(s)	546, 762
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	3 cut(s)	201, 294, 573
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	34
BlpI	GCTNAGC	1 cut(s)	806
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	3 cut(s)	292, 304, 557
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	2 cut(s)	307, 845
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	2 cut(s)	307, 845
Bpu1102I	GCTNAGC	1 cut(s)	806
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	2 cut(s)	410, 466
BpuMI	CCSGG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	476
BsaHI	GRCGYC	3 cut(s)	171, 246, 291
BsaJI	CCNNGG	3 cut(s)	238, 420, 559
BsaWI	WCCGGW	2 cut(s)	654, 661
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 213, 582, 661
Bse118I	RCCGGY	2 cut(s)	149, 769
Bse1I	ACTGG	2 cut(s)	302, 840
Bse8I	GATNNNNATC	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	661
BseDI	CCNNGG	3 cut(s)	238, 420, 559
BseGI	GGATG	4 cut(s)	231, 252, 673, 921
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	149, 213, 582, 661
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	2 cut(s)	302, 840
BsePI	GCGCGC	2 cut(s)	153, 155
BseRI	GAGGAG	5 cut(s)	109, 112, 248, 797, 869
BseXI	GCAGC	4 cut(s)	25, 28, 559, 703
BseYI	CCCAGC	3 cut(s)	24, 213, 598
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	155, 157
BshFI	GGCC	2 cut(s)	425, 758
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	5 cut(s)	150, 240, 655, 662, 770
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	4 cut(s)	149, 213, 582, 661
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	2 cut(s)	425, 758
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	3 cut(s)	305, 537, 706
Bsp13I	TCCGGA	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
Bsp1720I	GCTNAGC	1 cut(s)	806
BspANI	GGCC	2 cut(s)	425, 758
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	2 cut(s)	155, 157
BspLI	GGNNCC	3 cut(s)	292, 304, 557
BspPI	GGATC	2 cut(s)	38, 466
BspT104I	TTCGAA	1 cut(s)	800
BspT107I	GGYRCC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	149, 769
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	302, 840
BssAI	RCCGGY	2 cut(s)	149, 769
BssECI	CCNNGG	3 cut(s)	238, 420, 559
BssHII	GCGCGC	2 cut(s)	153, 155
BssMI	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
BssNI	GRCGYC	3 cut(s)	171, 246, 291
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	632, 940
Bst6I	CTCTTC	2 cut(s)	290, 747
BstACI	GRCGYC	3 cut(s)	171, 246, 291
BstAUI	TGTACA	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	6 cut(s)	151, 155, 157, 164, 596, 873
BstDEI	CTNAG	2 cut(s)	536, 806
BstF5I	GGATG	4 cut(s)	231, 252, 673, 921
BstFNI	CGCG	2 cut(s)	155, 157
BstH2I	RGCGCY	3 cut(s)	201, 294, 573
BstHHI	GCGC	7 cut(s)	155, 157, 159, 200, 293, 457, 572
BstKTI	GATC	6 cut(s)	37, 46, 433, 474, 549, 765
BstMBI	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 159, 163, 168, 385, 413, 422, 434
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	155, 157
BstV1I	GCAGC	4 cut(s)	25, 28, 559, 703
BstX2I	RGATCY	3 cut(s)	34, 43, 471
BstYI	RGATCY	3 cut(s)	34, 43, 471
BsuRI	GGCC	2 cut(s)	425, 758
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	231, 252, 673, 921
BtsIMutI	CAGTG	2 cut(s)	544, 628
Cac8I	GCNNGC	6 cut(s)	151, 155, 157, 164, 596, 873
CfoI	GCGC	7 cut(s)	155, 157, 159, 200, 293, 457, 572
Cfr10I	RCCGGY	2 cut(s)	149, 769
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	3 cut(s)	160, 254, 595
Csp6I	GTAC	3 cut(s)	466, 623, 936
CspCI	CAANNNNNGTGG	2 cut(s)	617, 652
CviAII	CATG	4 cut(s)	491, 496, 550, 900
CviQI	GTAC	3 cut(s)	466, 623, 936
DdeI	CTNAG	2 cut(s)	536, 806
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	6 cut(s)	36, 45, 432, 473, 548, 764
DpnII	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
Eam1104I	CTCTTC	2 cut(s)	290, 747
EarI	CTCTTC	2 cut(s)	290, 747
EciI	GGCGGA	2 cut(s)	115, 224
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	305, 537
Eco47I	GGWCC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	305, 537
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	494, 499, 553, 903
FaiI	YATR	7 cut(s)	60, 492, 497, 551, 789, 901, 905
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	4 cut(s)	490, 495, 549, 899
FbaI	TGATCA	2 cut(s)	546, 762
FblI	GTMKAC	3 cut(s)	222, 348, 832
FokI	GGATG	4 cut(s)	218, 239, 680, 928
FriOI	GRGCYC	2 cut(s)	305, 537
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	7 cut(s)	154, 156, 158, 199, 292, 456, 571
GsaI	CCCAGC	3 cut(s)	28, 217, 602
HaeII	RGCGCY	3 cut(s)	201, 294, 573
HaeIII	GGCC	2 cut(s)	425, 758
HapII	CCGG	5 cut(s)	150, 240, 655, 662, 770
HgaI	GACGC	3 cut(s)	160, 254, 595
HhaI	GCGC	7 cut(s)	155, 157, 159, 200, 293, 457, 572
Hin1I	GRCGYC	3 cut(s)	171, 246, 291
Hin1II	CATG	4 cut(s)	494, 499, 553, 903
Hin6I	GCGC	7 cut(s)	153, 155, 157, 198, 291, 455, 570
HinP1I	GCGC	7 cut(s)	153, 155, 157, 198, 291, 455, 570
HincII	GTYRAC	5 cut(s)	181, 223, 310, 349, 833
HindII	GTYRAC	5 cut(s)	181, 223, 310, 349, 833
HindIII	AAGCTT	2 cut(s)	386, 803
HinfI	GANTC	6 cut(s)	4, 66, 368, 460, 829, 860
HpaII	CCGG	5 cut(s)	150, 240, 655, 662, 770
HphI	GGTGA	4 cut(s)	104, 403, 874, 952
Hpy166II	GTNNAC	8 cut(s)	70, 181, 223, 310, 349, 623, 625, 833
Hpy188I	TCNGA	3 cut(s)	43, 65, 190
Hpy188III	TCNNGA	4 cut(s)	523, 662, 849, 864
Hpy8I	GTNNAC	8 cut(s)	70, 181, 223, 310, 349, 623, 625, 833
Hpy99I	CGWCG	5 cut(s)	176, 248, 335, 350, 593
HpyAV	CCTTC	4 cut(s)	30, 418, 493, 717
HpyCH4III	ACNGT	2 cut(s)	632, 940
HpyCH4IV	ACGT	2 cut(s)	264, 855
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 159, 163, 168, 385, 413, 422, 434
HpyF3I	CTNAG	2 cut(s)	536, 806
HpySE526I	ACGT	2 cut(s)	264, 855
Hsp92I	GRCGYC	3 cut(s)	171, 246, 291
Hsp92II	CATG	4 cut(s)	494, 499, 553, 903
HspAI	GCGC	7 cut(s)	153, 155, 157, 198, 291, 455, 570
KasI	GGCGCC	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	661
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	546, 762
Kzo9I	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
LmnI	GCTCC	5 cut(s)	308, 502, 555, 709, 784
Lsp1109I	GCAGC	4 cut(s)	25, 28, 559, 703
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	264, 855
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	6 cut(s)	36, 45, 432, 473, 548, 764
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
MboII	GAAGA	3 cut(s)	277, 394, 764
MfeI	CAATTG	1 cut(s)	673
MflI	RGATCY	3 cut(s)	34, 43, 471
MhlI	GDGCHC	3 cut(s)	305, 537, 706
MluCI	AATT	1 cut(s)	673
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	4 cut(s)	75, 362, 838, 869
MreI	CGCCGGCG	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	735
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	5 cut(s)	150, 240, 655, 662, 770
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	673
MvnI	CGCG	2 cut(s)	155, 157
MwoI	GCNNNNNNNGC	8 cut(s)	25, 159, 163, 168, 385, 413, 422, 434
NaeI	GCCGGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	494, 499, 553, 903
NlaIV	GGNNCC	3 cut(s)	292, 304, 557
NmeAIII	GCCGAG	2 cut(s)	147, 584
NmuCI	GTSAC	1 cut(s)	110
NspV	TTCGAA	1 cut(s)	800
OliI	CACNNNNGTG	1 cut(s)	630
PauI	GCGCGC	2 cut(s)	153, 155
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 363
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	4, 460
PflFI	GACNNNGTC	2 cut(s)	248, 371
PleI	GAGTC	4 cut(s)	74, 362, 837, 868
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	4 cut(s)	74, 362, 837, 868
PspFI	CCCAGC	3 cut(s)	24, 213, 598
PspN4I	GGNNCC	3 cut(s)	292, 304, 557
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	3 cut(s)	34, 43, 471
PsyI	GACNNNGTC	2 cut(s)	248, 371
PteI	GCGCGC	2 cut(s)	153, 155
RsaI	GTAC	3 cut(s)	467, 624, 937
RsaNI	GTAC	3 cut(s)	466, 623, 936
RseI	CAYNNNNRTG	1 cut(s)	630
SalI	GTCGAC	3 cut(s)	221, 347, 831
SaqAI	TTAA	1 cut(s)	735
Sau3AI	GATC	6 cut(s)	34, 43, 430, 471, 546, 762
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	4 cut(s)	75, 362, 838, 869
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	3 cut(s)	305, 537, 706
SfaNI	GCATC	1 cut(s)	394
SfoI	GGCGCC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	800
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	389, 445
SmoI	CTYRAG	2 cut(s)	389, 445
Sse9I	AATT	1 cut(s)	673
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	632, 940
TaiI	ACGT	2 cut(s)	267, 858
TaqI	TCGA	6 cut(s)	222, 348, 402, 522, 800, 832
TasI	AATT	1 cut(s)	673
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	6 cut(s)	131, 162, 428, 508, 681, 722
TfiI	GAWTC	2 cut(s)	4, 460
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	2 cut(s)	544, 635
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	4 cut(s)	13, 16, 572, 716
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	17, 512
TspGWI	ACGGA	4 cut(s)	268, 295, 361, 453
TspRI	CASTG	2 cut(s)	544, 635
Tth111I	GACNNNGTC	2 cut(s)	248, 371
VpaK11BI	GGWCC	1 cut(s)	487
XmiI	GTMKAC	3 cut(s)	222, 348, 832
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.