Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006464

Physical Location & Seq

Genomic Coordinates Reverse (-)

14402244 .. 14402696

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGGAAACACTTGATCTCTCATTCAATCACCTTTCAGGACAAATTCCCCAAAGCTTTTCTTCATTGACCTCTTTGTCTCACTTGAACTTGTCTAACTACCTCTCCGGCAGAATCCCTACAGGCCCCCAACTTCAAACACTGGAGAATTCCTCCTATGTGGGGAATCCATTACTCTGTGGATTTCCTCTTTTATCCGAGTGCCTGGGAGATGACACACCAACAAAACAAATTTTTCCCGGAGAAGACAGTGAAGATGAAGATGACAGCGAAAAGCTTGGTTTCTATATCAGCATGGTCCTCGGGTTTGTCATAAGCTTCTGGGCTGTTTATGGCACTTTGGTCCTAAAGAGGGCATGGAGGTATGCCTATTTTCGATTCTGTGACAACATCAAGGAGAGGATCGCACTGAAAATTGCATTGAAAGTAGCTCGTTTGCAAGGAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0010033 GO:0016020 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

150

Amino Acids

16.86

Weight (kDa)

5.32

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27320 AT4G27320 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430 AT5G54430
fragaria_vesca	FvH4_3g21220 FvH4_3g21220
malus_domestica	MD03G1216700.v1.1 MD11G1234300.v1.1
prunus_persica	Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1 Prupe.4G192600_v2.0.a1
pyrus_communis	pycom11g20630
rosa_chinensis	RchiOBHm_Chr5g0036291
rosa_laevigata	RLG00000033684 RLG00000035812
rosa_multiflora	Rmu_sc0000247.1_g000073
rosa_roxburghii	Rroxscaffold_1G00044500
rosa_rugosa	Rorug05G0154600 Rorug05G0154700 Rorug05G0154800
rosa_samantha	Rh5BG248900
rosa_wichuraiana	Rw5G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	3 cut(s)	45, 148, 231
AfiI	CCNNNNNNNGG	2 cut(s)	162, 352
AgsI	TTSAA	4 cut(s)	28, 88, 137, 424
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	4 cut(s)	57, 277, 318, 431
AluI	AGCT	4 cut(s)	57, 277, 318, 431
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	124
ApoI	RAATTY	3 cut(s)	45, 148, 231
AspS9I	GGNCC	3 cut(s)	125, 298, 343
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	298, 343
BbsI	GAAGAC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	206, 240
Bme18I	GGWCC	2 cut(s)	298, 343
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	125, 298, 343
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	206, 240
BpiI	GAAGAC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	205, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 352
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	205, 301
BseLI	CCNNNNNNNGG	2 cut(s)	162, 352
BseNI	ACTGG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	108, 240
BslI	CCNNNNNNNGG	2 cut(s)	162, 352
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	16, 402
BspANI	GGCC	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	205, 301
BssMI	GATC	2 cut(s)	16, 402
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	251
BstKTI	GATC	2 cut(s)	19, 405
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	16, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	204, 238
BstSFI	CTRYAG	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	126
BtsIMutI	CAGTG	3 cut(s)	140, 256, 407
Cfr13I	GGNCC	3 cut(s)	125, 298, 343
CviAII	CATG	2 cut(s)	295, 357
CviJI	RGCY	7 cut(s)	57, 126, 277, 318, 326, 431, 448
CviKI_1	RGCY	7 cut(s)	57, 126, 277, 318, 326, 431, 448
DpnI	GATC	2 cut(s)	18, 404
DpnII	GATC	2 cut(s)	16, 402
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	298, 343
Eco88I	CYCGRG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	298, 360
FaiI	YATR	7 cut(s)	159, 288, 296, 314, 333, 358, 366
FalI	AAGNNNNNCTT	3 cut(s)	46, 78, 432
FatI	CATG	2 cut(s)	294, 356
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	108, 240
Hin1II	CATG	2 cut(s)	298, 360
HindIII	AAGCTT	3 cut(s)	55, 275, 316
HinfI	GANTC	3 cut(s)	114, 166, 378
HpaII	CCGG	2 cut(s)	108, 240
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	419, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
Hsp92II	CATG	2 cut(s)	298, 360
Kzo9I	GATC	2 cut(s)	16, 402
LpnPI	CCDG	8 cut(s)	24, 108, 121, 128, 191, 218, 253, 307
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	18, 404
MboI	GATC	2 cut(s)	16, 402
MboII	GAAGA	4 cut(s)	54, 257, 266, 272
MluCI	AATT	4 cut(s)	45, 148, 231, 414
MnlI	CCTC	8 cut(s)	82, 113, 163, 198, 311, 345, 354, 393
MspI	CCGG	2 cut(s)	108, 240
MspR9I	CCNGG	2 cut(s)	206, 240
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	16, 402
NlaIII	CATG	2 cut(s)	298, 360
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	114, 166, 378
PfoI	TCCNGGA	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	125, 298, 343
Sau3AI	GATC	2 cut(s)	16, 402
Sau96I	GGNCC	3 cut(s)	125, 298, 343
ScrFI	CCNGG	2 cut(s)	206, 240
SetI	ASST	8 cut(s)	36, 59, 74, 105, 279, 320, 365, 433
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	298, 343
Sse9I	AATT	4 cut(s)	45, 148, 231, 414
StyD4I	CCNGG	2 cut(s)	204, 238
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	45, 148, 231, 414
TfiI	GAWTC	3 cut(s)	114, 166, 378
TscAI	CASTG	3 cut(s)	147, 256, 414
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	54, 273
TspRI	CASTG	3 cut(s)	147, 256, 414
VpaK11BI	GGWCC	2 cut(s)	298, 343
XapI	RAATTY	3 cut(s)	45, 148, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.